mRNA_Ecto-sp13_S_contig11946.1660.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11946.1660.1
Unique NamemRNA_Ecto-sp13_S_contig11946.1660.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11946.1660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11946contigEcto-sp13_S_contig11946:1707..2151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size447
Hectar predicted targeting categoryother localisation
Exons1
Cds size435
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462632.6629493-UTR-Ecto-sp13_S_contig11946:1706..17161681462632.6629493-UTR-Ecto-sp13_S_contig11946:1706..1716Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11946 1707..1716 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462632.672953-CDS-Ecto-sp13_S_contig11946:1716..21511681462632.672953-CDS-Ecto-sp13_S_contig11946:1716..2151Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11946 1717..2151 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11946.1660.1prot_Ecto-sp13_S_contig11946.1660.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11946 1717..2151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11946.1660.1

>prot_Ecto-sp13_S_contig11946.1660.1 ID=prot_Ecto-sp13_S_contig11946.1660.1|Name=mRNA_Ecto-sp13_S_contig11946.1660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp
MGACFLATSCRLVGPTDRCFTPSVHSFTHVPTAHDKNSSNRCSDGENADY
LARPLPRSPPVNLPSGSLERKARLGSARMLKMSRARKQMYVRTYISASTA
LLKASRISSQAEVSHVRRGVGGGNIVFFRSTRCRSWTVAFQAELQ
back to top

mRNA from alignment at Ecto-sp13_S_contig11946:1707..2151+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11946.1660.1 ID=mRNA_Ecto-sp13_S_contig11946.1660.1|Name=mRNA_Ecto-sp13_S_contig11946.1660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=445bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11946:1707..2151+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTGATCATGGGTGCGTGTTTCCTTGCCACATCCTGTCGCCTGGTCG
GACCCACAGACAGGTGTTTTACCCCCTCCGTCCACTCGTTCACACACGTA
CCAACCGCTCACGACAAGAACAGTTCTAATCGATGCTCAGATGGGGAAAA
CGCGGACTATCTTGCACGCCCTCTGCCTCGTTCCCCTCCCGTCAATCTCC
CGTCCGGCTCATTAGAGAGGAAAGCTAGACTGGGGTCCGCTCGCATGCTA
AAAATGAGCAGAGCGCGTAAGCAGATGTATGTACGTACGTACATCTCAGC
AAGCACGGCACTATTAAAAGCAAGTAGGATTTCCTCGCAAGCAGAAGTAT
CGCATGTACGCAGGGGCGTGGGGGGGGGAAATATTGTTTTTTTTCGGTCC
ACTCGGTGCCGATCGTGGACTGTTGCCTTTCAGGCGGAACTTCAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11946:1707..2151+

>mRNA_Ecto-sp13_S_contig11946.1660.1 ID=mRNA_Ecto-sp13_S_contig11946.1660.1|Name=mRNA_Ecto-sp13_S_contig11946.1660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11946:1707..2151+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGCGTGTTTCCTTGCCACATCCTGTCGCCTGGTCGGACCCACAGA
CAGGTGTTTTACCCCCTCCGTCCACTCGTTCACACACGTACCAACCGCTC
ACGACAAGAACAGTTCTAATCGATGCTCAGATGGGGAAAACGCGGACTAT
CTTGCACGCCCTCTGCCTCGTTCCCCTCCCGTCAATCTCCCGTCCGGCTC
ATTAGAGAGGAAAGCTAGACTGGGGTCCGCTCGCATGCTAAAAATGAGCA
GAGCGCGTAAGCAGATGTATGTACGTACGTACATCTCAGCAAGCACGGCA
CTATTAAAAGCAAGTAGGATTTCCTCGCAAGCAGAAGTATCGCATGTACG
CAGGGGCGTGGGGGGGGGAAATATTGTTTTTTTTCGGTCCACTCGGTGCC
GATCGTGGACTGTTGCCTTTCAGGCGGAACTTCAG
back to top