mRNA_Ecto-sp13_S_contig11944.1658.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11944.1658.1
Unique NamemRNA_Ecto-sp13_S_contig11944.1658.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11944.1658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11944contigEcto-sp13_S_contig11944:929..2108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size713
Hectar predicted targeting categoryother localisation
Exons2
Cds size441
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462632.5111153-UTR-Ecto-sp13_S_contig11944:928..11761681462632.5111153-UTR-Ecto-sp13_S_contig11944:928..1176Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11944 929..1176 +
1681462632.537036-UTR-Ecto-sp13_S_contig11944:2084..21081681462632.537036-UTR-Ecto-sp13_S_contig11944:2084..2108Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11944 2085..2108 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462632.520037-CDS-Ecto-sp13_S_contig11944:1176..15361681462632.520037-CDS-Ecto-sp13_S_contig11944:1176..1536Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11944 1177..1536 +
1681462632.5284073-CDS-Ecto-sp13_S_contig11944:2003..20841681462632.5284073-CDS-Ecto-sp13_S_contig11944:2003..2084Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11944 2004..2084 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11944.1658.1prot_Ecto-sp13_S_contig11944.1658.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11944 1177..2084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11944.1658.1

>prot_Ecto-sp13_S_contig11944.1658.1 ID=prot_Ecto-sp13_S_contig11944.1658.1|Name=mRNA_Ecto-sp13_S_contig11944.1658.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp
MFDFVAAPTAMSFMKRCSFVSPQPQSIDVDRTCLAIARSMEPPPLLSDDM
STCLPPLHALEQIYLHEDRKGAFHTHTPVLFHPFNFFWKQSCPGYSHLCR
NDKQHTGSTQTEGWLLLDFKVHTRRDALAETLPVKGTKRDNGKNNQ*
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mRNA from alignment at Ecto-sp13_S_contig11944:929..2108+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11944.1658.1 ID=mRNA_Ecto-sp13_S_contig11944.1658.1|Name=mRNA_Ecto-sp13_S_contig11944.1658.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11944:929..2108+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGTGGGCAAAACCATGTCGGTGCATTCTGTGGAATGCCGACTGTCTGTC
GATGTTCTGGCCGTTAACGGGGGGGGGGGGGGGGGTCGACGATTTGATGT
TCAGGTCCTCTTGTTCACGGACCCATTTTTCGTTTTCCCTCTTCATTCTC
CTCTCCCACGAAACACGTGTTAATTATTTTTCAGATTAGGTGCAACTAAC
TGCGGTCGGTGCCAAAGGACCGAGTTAGTCGCCTTTCGGAACGAAATCAT
GTTTGATTTTGTTGCTGCACCCACTGCCATGTCATTCATGAAGAGGTGTT
CGTTCGTGTCACCGCAACCTCAGTCGATCGATGTCGATCGTACATGTTTA
GCAATCGCACGTTCGATGGAACCGCCGCCTTTGCTCAGTGATGACATGTC
AACATGTCTGCCGCCACTTCACGCACTGGAACAAATTTATTTACACGAGG
ATAGAAAGGGAGCATTTCACACTCACACGCCCGTTTTGTTCCACCCGTTC
AATTTTTTTTGGAAGCAATCCTGTCCTGGGTATTCACACCTTTGCAGGAA
CGACAAGCAGCACACCGGGAGTACACAGACAGAGGGATGGCTCCTTCTGG
ATTTCAAAGTGAGGCCTCGGTTTTGACAGCGAGAGAGGTTCAGCAAGCCT
TTCCCTCGTCGTCGGTAGTCTAGAAAACAGTGGGTGCCAACTTCAGAAAC
TGGCAGTTGTGGCCATGAAAAAAATCAACGTGTACGCACTTCAATTTTAC
CCTTACGAAGCGCAGGTGCTCATCCAAGAATCAAGAATATCCTCTACCAA
ACCCTCCTCAAGTCGATGTTGGGTACTACACCCGGCACAGATATTATGAA
ACGAGCCCCGGGCCAAGTCAGGGTTCGGCACTTTACGCACGAAAACTTGG
AAAAACTTGGATGCGGATAACCTACTGTACCATCAAATCAACAGGAACGT
ACAGGCAGTAGATCAATAAATCGGGATACGCTTTGCTCAGCTTCTCGTTT
TTCTCGGCGGCGTCAACGTAGACTGTGCATGTATAACATAAATAGTACCA
ATAGGATATCATACACTTTGCACAGGTTCATACAAGGCGAGACGCGTTAG
CCGAGACCTTGCCTGTGAAAGGGACAAAAAGAGACAACGGAAAGAACAAC
CAATGATGCCCTGCGGTTTCGCGACGCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11944:929..2108+

>mRNA_Ecto-sp13_S_contig11944.1658.1 ID=mRNA_Ecto-sp13_S_contig11944.1658.1|Name=mRNA_Ecto-sp13_S_contig11944.1658.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11944:929..2108+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTGATTTTGTTGCTGCACCCACTGCCATGTCATTCATGAAGAGGTG
TTCGTTCGTGTCACCGCAACCTCAGTCGATCGATGTCGATCGTACATGTT
TAGCAATCGCACGTTCGATGGAACCGCCGCCTTTGCTCAGTGATGACATG
TCAACATGTCTGCCGCCACTTCACGCACTGGAACAAATTTATTTACACGA
GGATAGAAAGGGAGCATTTCACACTCACACGCCCGTTTTGTTCCACCCGT
TCAATTTTTTTTGGAAGCAATCCTGTCCTGGGTATTCACACCTTTGCAGG
AACGACAAGCAGCACACCGGGAGTACACAGACAGAGGGATGGCTCCTTCT
GGATTTCAAAGTTCATACAAGGCGAGACGCGTTAGCCGAGACCTTGCCTG
TGAAAGGGACAAAAAGAGACAACGGAAAGAACAACCAATGA
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