mRNA_Ecto-sp13_S_contig11943.1657.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11943.1657.1
Unique NamemRNA_Ecto-sp13_S_contig11943.1657.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11943.1657.1 vs. uniprot
Match: D7FH90_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH90_ECTSI)

HSP 1 Score: 306 bits (784), Expect = 2.020e-94
Identity = 167/236 (70.76%), Postives = 188/236 (79.66%), Query Frame = 2
Query:   11 GDEKEEGASVPSPSTPPSLLPQEQQIGXXXXXXXXXXXXLGSPNQREEVVGERVRSPEHASLSPEAAAQVDRMFTGQLSSSAGLDSLIRENPEALEDIQRVLESTVAGSFYPDDERRDMERRRKLGTFVTMSNALGEVALRRTEDMDIQRKELALPPFSREYYTAIRTGLCEAYLAASVIDSDWMPTSKTGGMGKAGAALKLMSSAVPVIGGLTGQAGKALETEDHYVQTRRLVKV 718
            GDEKEE A          LLPQ+Q+ G XXX        LG PNQREE V ER RSPE ASLSP  A ++DR+F+ QLSSSAGLDSLIRE P+ALEDIQRV+ESTVAGS  PDD+  D++ RRKLGT VTMS ALGEVALR TEDM+IQRKELALP FS  YY+A+R+GLC+AYLAASVIDSDW+ TSKTGGMGKAGAA+KLMSSAVPV+GGL   AGKALE  DHY+QTRRLVK+
Sbjct:  337 GDEKEEDAPXXXXXXXXVLLPQQQETGEXXXNEKDNPVPLGFPNQREEAVWERARSPERASLSPGKAEEMDRLFSAQLSSSAGLDSLIREKPKALEDIQRVIESTVAGSVSPDDKLSDIDGRRKLGTLVTMSTALGEVALRHTEDMNIQRKELALPAFSNAYYSAVRSGLCQAYLAASVIDSDWVSTSKTGGMGKAGAAMKLMSSAVPVVGGLPELAGKALEAGDHYLQTRRLVKI 572          
BLAST of mRNA_Ecto-sp13_S_contig11943.1657.1 vs. uniprot
Match: D7G1L2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L2_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 2.240e-92
Identity = 169/236 (71.61%), Postives = 190/236 (80.51%), Query Frame = 2
Query:   11 GDEKEEGASVPSPSTPPSLLPQEQQIGXXXXXXXXXXXXLGSPNQREEVVGERVRSPEHASLSPEAAAQVDRMFTGQLSSSAGLDSLIRENPEALEDIQRVLESTVAGSFYPDDERRDMERRRKLGTFVTMSNALGEVALRRTEDMDIQRKELALPPFSREYYTAIRTGLCEAYLAASVIDSDWMPTSKTGGMGKAGAALKLMSSAVPVIGGLTGQAGKALETEDHYVQTRRLVKV 718
            GD+KEE A  P  S PP LLPQ+QQI  XXXXXXXXXXX   PN RE VV ERVRSPEHASLSP  A +VD M   Q SSSAGL  LIRENPEALEDIQRV+E+T   S +PDDE  D++ RR LGT VTMS ALGEVAL+ TEDM ++RKELALPPFS+EYY+A+R+GLC+AYLAASVIDS+W+ TSKTGGMGK GAALKLMS AVP+IGGL   AGKALE  D Y+QTRRLVK+
Sbjct:   92 GDKKEEDAPAPRTSPPPVLLPQQQQIDAXXXXXXXXXXXXXXPNSREVVVEERVRSPEHASLSPGKAEEVDPMVRAQFSSSAGLGPLIRENPEALEDIQRVIEATTVRSIHPDDELSDIQSRRNLGTLVTMSTALGEVALKHTEDMSVRRKELALPPFSKEYYSAVRSGLCQAYLAASVIDSNWVSTSKTGGMGKVGAALKLMSGAVPLIGGLPKLAGKALEAGDTYLQTRRLVKI 327          
BLAST of mRNA_Ecto-sp13_S_contig11943.1657.1 vs. uniprot
Match: D7FHA3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI)

HSP 1 Score: 294 bits (752), Expect = 1.040e-89
Identity = 159/236 (67.37%), Postives = 178/236 (75.42%), Query Frame = 2
Query:   11 GDEKEEGASVPSPSTPPSLLPQEQQIGXXXXXXXXXXXXLGSPNQREEVVGERVRSPEHASLSPEAAAQVDRMFTGQLSSSAGLDSLIRENPEALEDIQRVLESTVAGSFYPDDERRDMERRRKLGTFVTMSNALGEVALRRTEDMDIQRKELALPPFSREYYTAIRTGLCEAYLAASVIDSDWMPTSKTGGMGKAGAALKLMSSAVPVIGGLTGQAGKALETEDHYVQTRRLVKV 718
            GD++ + A VP P  P  LLPQ+QQI             L SPNQR+EVV     S   AS SPE A +VDR+F  QL SSAGLDSLIRENP ALE+IQ  +E  VAGSFYPD+E  DM+ RR LGT VTMS ALGEVALR TEDM++QRKELALPPFS+ YYTAIRTGLC+AYLAAS IDSDW+ TSKTGGMGK GAALKLMSSAVP+IGGL   AGKALE  D Y+QTRRLVK+
Sbjct:  287 GDQRGKDAPVPPPXAPTVLLPQQQQIDAGDETEEDAPVLLDSPNQRQEVVAGSANSTGRASTSPEKAEEVDRLFRAQLVSSAGLDSLIRENPAALENIQLAIERQVAGSFYPDNELGDMQSRRNLGTLVTMSTALGEVALRHTEDMNVQRKELALPPFSKAYYTAIRTGLCKAYLAASAIDSDWVITSKTGGMGKVGAALKLMSSAVPLIGGLPKLAGKALEAGDTYLQTRRLVKI 522          
BLAST of mRNA_Ecto-sp13_S_contig11943.1657.1 vs. uniprot
Match: D7FHA2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA2_ECTSI)

HSP 1 Score: 286 bits (732), Expect = 8.410e-88
Identity = 145/196 (73.98%), Postives = 168/196 (85.71%), Query Frame = 2
Query:  131 GSPNQREEVVGERVRSPEHASLSPEAAAQVDRMFTGQLSSSAGLDSLIRENPEALEDIQRVLESTVAGSFYPDDERRDMERRRKLGTFVTMSNALGEVALRRTEDMDIQRKELALPPFSREYYTAIRTGLCEAYLAASVIDSDWMPTSKTGGMGKAGAALKLMSSAVPVIGGLTGQAGKALETEDHYVQTRRLVKV 718
            GS N R E VGERVRSPEHASLSPE A + DR+F  QLSSSAGLDSLIRENP ALEDIQRV+E++VAGS   D+E  DM+ RRKLGT VTMS ALGEV L+ TEDMD++R+EL LPPFS+ YYTA+RTG+C AYLAASVIDSDW+ TSKTGGMGKAGAALK+MS A+PV+GG TG AGKA+++ DHY+QTRRLVK+
Sbjct:  289 GSRNGRHEAVGERVRSPEHASLSPEKAEEADRVFKAQLSSSAGLDSLIRENPGALEDIQRVIEASVAGSVSVDNELSDMQSRRKLGTLVTMSTALGEVVLKHTEDMDVKREELTLPPFSKAYYTAVRTGICNAYLAASVIDSDWVSTSKTGGMGKAGAALKVMSRAIPVVGGPTGLAGKAMKSGDHYLQTRRLVKI 484          
BLAST of mRNA_Ecto-sp13_S_contig11943.1657.1 vs. uniprot
Match: A0A6H5KZF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 3.400e-82
Identity = 148/197 (75.13%), Postives = 162/197 (82.23%), Query Frame = 2
Query:  128 LGSPNQREEVVGERVRSPEHASLSPEAAAQVDRMFTGQLSSSAGLDSLIRENPEALEDIQRVLESTVAGSFYPDDERRDMERRRKLGTFVTMSNALGEVALRRTEDMDIQRKELALPPFSREYYTAIRTGLCEAYLAASVIDSDWMPTSKTGGMGKAGAALKLMSSAVPVIGGLTGQAGKALETEDHYVQTRRLVKV 718
            LGSPNQREEVV E VRSPEHASLSPE A +VDR+F  QLSSSAG DSLIRENPEALEDI RV+++  AGS    DE  DMERRRKLGT V M+ ALGEVAL  TEDMD+QRKELAL PFS+ YYTA+R+GLC AYLAASVIDSDW+ T KTGGMGK G AL L+SSAVPVI GL G AGKAL T DH +QTRRLVK+
Sbjct:  403 LGSPNQREEVVREGVRSPEHASLSPEKAEEVDRLFRVQLSSSAGFDSLIRENPEALEDIHRVIKAPAAGSLDFVDEISDMERRRKLGTLVNMAKALGEVALSHTEDMDVQRKELALTPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTCKTGGMGKGGTALVLLSSAVPVISGLAGLAGKALRTGDHCLQTRRLVKI 599          
BLAST of mRNA_Ecto-sp13_S_contig11943.1657.1 vs. uniprot
Match: D7FH89_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI)

HSP 1 Score: 275 bits (703), Expect = 5.380e-81
Identity = 143/197 (72.59%), Postives = 161/197 (81.73%), Query Frame = 2
Query:  128 LGSPNQREEVVGERVRSPEHASLSPEAAAQVDRMFTGQLSSSAGLDSLIRENPEALEDIQRVLESTVAGSFYPDDERRDMERRRKLGTFVTMSNALGEVALRRTEDMDIQRKELALPPFSREYYTAIRTGLCEAYLAASVIDSDWMPTSKTGGMGKAGAALKLMSSAVPVIGGLTGQAGKALETEDHYVQTRRLVKV 718
            L SP  R+  VG RVRSPE+ASLSP  AA+VDR+F  QLSSSAGLDSLI+ENPEALEDIQRV+++  AG FY DDE  DMERRRKLG  + M+ ALGEVAL  TED D+QRKELAL PFS+ YYTA+R+GLC AYLAASVIDSDW+ TSKTGGMGK G AL L+SSAVPVI GL G AGKAL T DHY+QTRRL K+
Sbjct:  443 LVSPTHRQAAVGGRVRSPENASLSPGKAAEVDRLFRVQLSSSAGLDSLIKENPEALEDIQRVIKAPAAGGFYFDDELSDMERRRKLGALMNMAKALGEVALSHTEDKDVQRKELALAPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTSKTGGMGKGGTALVLLSSAVPVISGLAGLAGKALRTGDHYLQTRRLAKI 639          
BLAST of mRNA_Ecto-sp13_S_contig11943.1657.1 vs. uniprot
Match: A0A6H5KJV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJV0_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 2.740e-76
Identity = 142/231 (61.47%), Postives = 161/231 (69.70%), Query Frame = 2
Query:  143 QREEVVGERVRSPEHASLSPEAAAQVDRMFTGQLSSSAGLDSLIRENPEALEDIQRVLESTVAGSFYPDDERRDMERRRKLGTFVTMSNALGEVA-------------------------------LRRTEDMDIQRKELALPPFSREYYTAIRTGLCEAYLAASVIDSDWMPTSKTGGMGK---------AGAALKLMSSAVPVIGGLTGQAGKALETEDHYVQTRRLVK 715
            QREEVV ERVRSPE ASLSPE   +VDR+FT QLSS AGL+SL+RENPEALEDIQRV++STV  SFYPDD+  DM+ RRKL T VTMS ALGEVA                               LR TEDMD+QRKE+ALP F + Y T +R+GLC+AYLA+SVIDSDW+  SKTGGMGK         AGAA+KLMS AVPV+GGL   AGKALE  DH+ QTRRLVK
Sbjct:  135 QREEVVRERVRSPERASLSPEKTEEVDRLFTAQLSSHAGLNSLVRENPEALEDIQRVIQSTVVRSFYPDDKHSDMDGRRKLATLVTMSTALGEVAVSPVRGTIPSACTSNGLTSFSVRNWCRIWNVLRHTEDMDVQRKEMALPLFLKAYCTVVRSGLCQAYLASSVIDSDWVSMSKTGGMGKVGAALGSKSAGAAVKLMSRAVPVVGGLPELAGKALEAGDHFFQTRRLVK 365          
BLAST of mRNA_Ecto-sp13_S_contig11943.1657.1 vs. uniprot
Match: D7FH88_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH88_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 7.110e-63
Identity = 123/199 (61.81%), Postives = 137/199 (68.84%), Query Frame = 2
Query:   17 EKEEGASVPSPSTPPSLLPQEQQIGXXXXXXXXXXXXLGSPNQREEVVGERVRSPEHASLSPEAAAQVDRMFTGQLSSSAGLDSLIRENPEALEDIQRVLESTVAGSFYPDDERRDMERRRKLGTFVTMSNALGEVALRRTEDMDIQRKELALPPFSREYYTAIRTGLCEAYLAASVIDSDWMPTSKTGGMGKAGAALK 613
            +KE  A  P       LLP     G            LGSP Q EEV  ER  S EH SLS E A +  R+F  QLSSSA LDSLI ENPEALEDIQRV+ES V GS  PDDER DMER R+LGT  +MS ALGEV L+ TEDMD+Q+KELALP F R YYTA+RTGLCEAYLAASVI+SDW+ TSKTGGMGK G A++
Sbjct:  239 QKEARAPEPPXXXXXRLLPXXXXAGESDEKEENAPMPLGSPTQGEEVALERTVSREHDSLSLEQA-EPGRLFRVQLSSSAWLDSLIGENPEALEDIQRVIESQVPGSVSPDDERSDMERHRELGTLASMSTALGEVVLKHTEDMDVQQKELALPAFWRAYYTAVRTGLCEAYLAASVINSDWVSTSKTGGMGKVGVAVR 436          
BLAST of mRNA_Ecto-sp13_S_contig11943.1657.1 vs. uniprot
Match: A0A6H5JDK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDK8_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 9.820e-45
Identity = 109/241 (45.23%), Postives = 128/241 (53.11%), Query Frame = 2
Query:   17 EKEEGASVPSPSTPPSLLPQEQQIGXXXXXXXXXXXXLGSPNQREEVVGERVRSPEHASLSPEAAAQVDRMFTGQLSSSAGLDSLIRENPEALEDIQRVLESTVAGSFYPDDERRDMERRRKLGTFVTMSNALGEVALRRTEDMDIQRKELALPPFSREYYTAIRTGLCEAYLAASVIDSDWMPTSKTGGMGKAGAAL--------KLMSSAVPVIGGLTGQAGKALETEDHYVQTRRLVK 715
            +KE  A  P PSTPP LLPQ+Q+ G            LGS  Q EEV+ +R  S EHA LSP    +VDR F  QLSSSAGL S IRENPE+LED      +T  G+                                              P F   YYTA+RTGLCE YLAASVI+SDW+  SKTG +G+ GAA+        KL+SS VPV+GGL   AGKALE  DHY+Q+RRLVK
Sbjct:   76 QKEAQAPEPPPSTPPRLLPQQQEAGESDQKEENAPMPLGSSTQGEEVMEDRAPSLEHAFLSPRKEQEVDRFFRAQLSSSAGLGSPIRENPESLED-----NATHGGTS---------------------------------------------PAFWSVYYTAVRTGLCEGYLAASVINSDWVSASKTGSIGEVGAAVRARARAAFKLLSSTVPVVGGLPELAGKALEIGDHYLQSRRLVK 266          
BLAST of mRNA_Ecto-sp13_S_contig11943.1657.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 5.230e-32
Identity = 76/169 (44.97%), Postives = 105/169 (62.13%), Query Frame = 2
Query:  212 AQVDRMFTGQLSSSAGLDSLIRENPEALEDIQRVLESTVAGSFYPDDERRDMERRRKLGTFVTMSNALGEVALRRTEDMDIQRKELALPPFSREYYTAIRTGLCEAYLAASVIDSDWMPTSKTGGMGKAGAALKLMSSAVPVIGGLTGQAGKALETEDHYVQTRRLVKV 718
            A +D M   Q+SS + L +L   + + LE +++++E+     F P     +     +L   V M+  LG++  R   + DIQR+ELALPP  + YYTAIRTGLC AYLAASV+ S  + TSKTG MG AG  L+ +SSAVPV+ GL G A  AL+  D Y+QTRR+ K+
Sbjct:  404 ADMDHMTQAQISSFSALSTLCGGSHKRLEQVRQLVEALDINRFSPGTGLSETGTLGELNRLVAMAEDLGDMVSRHVMNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVCSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKI 572          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11943.1657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FH90_ECTSI2.020e-9470.76Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
D7G1L2_ECTSI2.240e-9271.61Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FHA3_ECTSI1.040e-8967.37Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FHA2_ECTSI8.410e-8873.98Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KZF6_9PHAE3.400e-8275.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH89_ECTSI5.380e-8172.59Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
A0A6H5KJV0_9PHAE2.740e-7661.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH88_ECTSI7.110e-6361.81Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
A0A6H5JDK8_9PHAE9.820e-4545.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUA2_ECTSI5.230e-3244.97Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11943contigEcto-sp13_S_contig11943:1292..3237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score249.6
Seed ortholog evalue1.4e-63
Seed eggNOG ortholog2880.D7FH90
Model size912
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.Leucine rich repeat
EggNOG OGs2QVSR@2759,COG4886@1
Cds size684
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11943.1657.1prot_Ecto-sp13_S_contig11943.1657.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11943 1518..3235 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462632.4025922-UTR-Ecto-sp13_S_contig11943:1291..15171681462632.4025922-UTR-Ecto-sp13_S_contig11943:1291..1517Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11943 1292..1517 +
1681462632.4755867-UTR-Ecto-sp13_S_contig11943:3235..32371681462632.4755867-UTR-Ecto-sp13_S_contig11943:3235..3237Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11943 3236..3237 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462632.4165084-CDS-Ecto-sp13_S_contig11943:1517..17181681462632.4165084-CDS-Ecto-sp13_S_contig11943:1517..1718Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11943 1518..1718 +
1681462632.431958-CDS-Ecto-sp13_S_contig11943:1854..20221681462632.431958-CDS-Ecto-sp13_S_contig11943:1854..2022Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11943 1855..2022 +
1681462632.4465826-CDS-Ecto-sp13_S_contig11943:2144..22641681462632.4465826-CDS-Ecto-sp13_S_contig11943:2144..2264Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11943 2145..2264 +
1681462632.4569902-CDS-Ecto-sp13_S_contig11943:2439..25371681462632.4569902-CDS-Ecto-sp13_S_contig11943:2439..2537Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11943 2440..2537 +
1681462632.4669366-CDS-Ecto-sp13_S_contig11943:3138..32351681462632.4669366-CDS-Ecto-sp13_S_contig11943:3138..3235Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11943 3139..3235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11943.1657.1

>prot_Ecto-sp13_S_contig11943.1657.1 ID=prot_Ecto-sp13_S_contig11943.1657.1|Name=mRNA_Ecto-sp13_S_contig11943.1657.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=228bp
MFTGQLSSSAGLDSLIRENPEALEDIQRVLESTVAGSFYPDDERRDMERR
RKLGTFVTMSNALGEVALRRTEDMDIQRKELALPPFSREYYTAIRTGLCE
AYLAASVIDSDWMPTSKTGGMGKAGAALKLMSSAVPVIGGLTGQAGKALE
TEDHYVQTRRLVKVGSTTIRRPQKRRRRHGQRYRPSSCAHHGGHERAEGD
SARSTFGSSSKQFNEVALTVQIAPNKR*
back to top

mRNA from alignment at Ecto-sp13_S_contig11943:1292..3237+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11943.1657.1 ID=mRNA_Ecto-sp13_S_contig11943.1657.1|Name=mRNA_Ecto-sp13_S_contig11943.1657.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1946bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11943:1292..3237+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGGGCGAGGGCGATGAAAAGGAGGAGGGCGCTTCCGTACCCTCCCCTT CCACCCCTCCATCCTTGCTACCGCAGGAGCAGCAGATTGGCGAGGGCGAC GATAACGAGGAGGATGCTCCGGTGCCGCTTGGCTCCCCCAATCAAAGAGA GGAGGTGGTGGGGGAACGGGTCCGTTCTCCGGAACATGCTTCCTTGTCCC CAGAGGCGGCAGCACAAGTGGACCGAATGTTCACTGGGCAGCTTTCGTCC TCTGCAGGGTTAGATTCACTCATCAGGGAGAACCCTGAAGCTCTGGAGGA CATCCAACGGGTCCTTGAATCAACAGTCGCTGGAAGCTTTTATCCCGATG ATGAGCGTCGCGACATGGAGAGGCGCCGGAAGCTCGGCACGTTTGTGACC ATGTCAAACGCGCTAGGCGAGGTGGCGGTGAGCTGTGCGTGATACGATTC CCTCAGGATGCAGCATTAATGGCTAGAAAAGCGCTACAATGGCCAAAATG CTCGAATATGGAATGCGGTAGGTCGTCTGATCGCCAAAATCGCAATGCTG CCCACGTGCGCAGTTGAGGCGCACCGAGGACATGGACATCCAGCGGAAGG AGCTGGCCTTGCCTCCGTTCTCCAGAGAGTACTACACCGCGATCAGAACC GGTCTCTGCGAGGCGTACCTCGCTGCTAGCGTTATCGACAGTGACTGGAT GCCCACGAGCAAGACCGGTGGCATGGGCAAGGTGGGTACCGCTTTAGAAT CAGAGTTTGTGGATTGTGGAGCCTGCAGTCTGTACTTGCGGTGGACATGC AGTGCTCTCTGCCAGCCAATCGAAGTCCCAATGTGTTTTTTGCTATATGT CAGGCAGGAGCGGCCTTGAAGCTGATGTCTAGCGCAGTTCCCGTGATCGG TGGACTAACCGGACAAGCAGGCAAGGCGTTGGAGACCGAAGACCACTATG TGCAAACTCGGCGATTGGTGAAGGTGGGTCTGTCGTTAGACGTGCTTGCT CCTAGCGTTGCTATGCGCGGTGCGCTAGCCACCCCTCCATTACCCAGCCC ATTGTACCCATGTGAGCGATATCTGTGTCCACACTTGATACTTGGCAAAT CACGGCTATGGCATCTGACACGGTGAAGTGTTGCTCTCTGGCGAGAAGGT TGGCTCTACAACTATCCGACGGCCTCAGAAACGACGCCGGCGCCACGGCC AACGATACCGACCAAGTTCGTGTGCACACCACGGCGGGCATGAAAGGTGC GGCGGGAGAGAGGACTACATAATGTGGCAGTGCCGTTTGGATTGTGTACT TGGCTTTGTTCGTGGCGGCATGGCACAGACGCAAGGCTGCATGTTGAGAT GTTGAAATCGGTCGAAGTCTTCAGTCGTGTAGACACGTTGGGTTGGAGAA CATGTCTTCGGTGACGTCACGTGGATGTTATTTCCCATCGCCAGCACCAC TGCAAGCGTACTTTTCCAAGCGAAGACGACTATATCGGCGGACCAAGTGT TACTGTGCAAAGTTAAAGTTTCATTCTGGCGCACTTGTGGCTTCGATCAT GCCCGTAGCTAACGTTTCAGGCGTCTCTGCATATGGCGGAGGCGCTGATA TGTTGCCTCATATCATGAGCGAAGAAGATGTCTTTGAATACGTGCTGGAA CAGGTGGCCAGCTACGAGAGCAAAGATCATGTAAGTGCATACACCACGAT CTACGAAGTTGGTATGGATATTTTCGCCGTTTTGGCCGTACCGTTGTCTA CCTTAAGGAGGTTTGAGCACGCGAAAACGTTTTGCTGGAACGAGAACGAT ACCGCGCTGATTATGTGCCATGCTATCTTCCCACCTCTTTTCTTCAGGGC GGAGGGCGACTCGGCAAGAAGCACCTTTGGAAGCTCCTCAAAGCAGTTCA ACGAGGTTGCCTTGACGGTGCAAATTGCACCGAACAAAAGGTAATT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11943:1292..3237+

>mRNA_Ecto-sp13_S_contig11943.1657.1 ID=mRNA_Ecto-sp13_S_contig11943.1657.1|Name=mRNA_Ecto-sp13_S_contig11943.1657.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=684bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11943:1292..3237+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCACTGGGCAGCTTTCGTCCTCTGCAGGGTTAGATTCACTCATCAG
GGAGAACCCTGAAGCTCTGGAGGACATCCAACGGGTCCTTGAATCAACAG
TCGCTGGAAGCTTTTATCCCGATGATGAGCGTCGCGACATGGAGAGGCGC
CGGAAGCTCGGCACGTTTGTGACCATGTCAAACGCGCTAGGCGAGGTGGC
GTTGAGGCGCACCGAGGACATGGACATCCAGCGGAAGGAGCTGGCCTTGC
CTCCGTTCTCCAGAGAGTACTACACCGCGATCAGAACCGGTCTCTGCGAG
GCGTACCTCGCTGCTAGCGTTATCGACAGTGACTGGATGCCCACGAGCAA
GACCGGTGGCATGGGCAAGGCAGGAGCGGCCTTGAAGCTGATGTCTAGCG
CAGTTCCCGTGATCGGTGGACTAACCGGACAAGCAGGCAAGGCGTTGGAG
ACCGAAGACCACTATGTGCAAACTCGGCGATTGGTGAAGGTTGGCTCTAC
AACTATCCGACGGCCTCAGAAACGACGCCGGCGCCACGGCCAACGATACC
GACCAAGTTCGTGTGCACACCACGGCGGGCATGAAAGGGCGGAGGGCGAC
TCGGCAAGAAGCACCTTTGGAAGCTCCTCAAAGCAGTTCAACGAGGTTGC
CTTGACGGTGCAAATTGCACCGAACAAAAGGTAA
back to top