mRNA_Ecto-sp13_S_contig11943.1657.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11943.1657.1 vs. uniprot
Match: D7FH90_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH90_ECTSI) HSP 1 Score: 306 bits (784), Expect = 2.020e-94 Identity = 167/236 (70.76%), Postives = 188/236 (79.66%), Query Frame = 2
Query: 11 GDEKEEGASVPSPSTPPSLLPQEQQIGXXXXXXXXXXXXLGSPNQREEVVGERVRSPEHASLSPEAAAQVDRMFTGQLSSSAGLDSLIRENPEALEDIQRVLESTVAGSFYPDDERRDMERRRKLGTFVTMSNALGEVALRRTEDMDIQRKELALPPFSREYYTAIRTGLCEAYLAASVIDSDWMPTSKTGGMGKAGAALKLMSSAVPVIGGLTGQAGKALETEDHYVQTRRLVKV 718
GDEKEE A LLPQ+Q+ G XXX LG PNQREE V ER RSPE ASLSP A ++DR+F+ QLSSSAGLDSLIRE P+ALEDIQRV+ESTVAGS PDD+ D++ RRKLGT VTMS ALGEVALR TEDM+IQRKELALP FS YY+A+R+GLC+AYLAASVIDSDW+ TSKTGGMGKAGAA+KLMSSAVPV+GGL AGKALE DHY+QTRRLVK+
Sbjct: 337 GDEKEEDAPXXXXXXXXVLLPQQQETGEXXXNEKDNPVPLGFPNQREEAVWERARSPERASLSPGKAEEMDRLFSAQLSSSAGLDSLIREKPKALEDIQRVIESTVAGSVSPDDKLSDIDGRRKLGTLVTMSTALGEVALRHTEDMNIQRKELALPAFSNAYYSAVRSGLCQAYLAASVIDSDWVSTSKTGGMGKAGAAMKLMSSAVPVVGGLPELAGKALEAGDHYLQTRRLVKI 572
BLAST of mRNA_Ecto-sp13_S_contig11943.1657.1 vs. uniprot
Match: D7G1L2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L2_ECTSI) HSP 1 Score: 296 bits (758), Expect = 2.240e-92 Identity = 169/236 (71.61%), Postives = 190/236 (80.51%), Query Frame = 2
Query: 11 GDEKEEGASVPSPSTPPSLLPQEQQIGXXXXXXXXXXXXLGSPNQREEVVGERVRSPEHASLSPEAAAQVDRMFTGQLSSSAGLDSLIRENPEALEDIQRVLESTVAGSFYPDDERRDMERRRKLGTFVTMSNALGEVALRRTEDMDIQRKELALPPFSREYYTAIRTGLCEAYLAASVIDSDWMPTSKTGGMGKAGAALKLMSSAVPVIGGLTGQAGKALETEDHYVQTRRLVKV 718
GD+KEE A P S PP LLPQ+QQI XXXXXXXXXXX PN RE VV ERVRSPEHASLSP A +VD M Q SSSAGL LIRENPEALEDIQRV+E+T S +PDDE D++ RR LGT VTMS ALGEVAL+ TEDM ++RKELALPPFS+EYY+A+R+GLC+AYLAASVIDS+W+ TSKTGGMGK GAALKLMS AVP+IGGL AGKALE D Y+QTRRLVK+
Sbjct: 92 GDKKEEDAPAPRTSPPPVLLPQQQQIDAXXXXXXXXXXXXXXPNSREVVVEERVRSPEHASLSPGKAEEVDPMVRAQFSSSAGLGPLIRENPEALEDIQRVIEATTVRSIHPDDELSDIQSRRNLGTLVTMSTALGEVALKHTEDMSVRRKELALPPFSKEYYSAVRSGLCQAYLAASVIDSNWVSTSKTGGMGKVGAALKLMSGAVPLIGGLPKLAGKALEAGDTYLQTRRLVKI 327
BLAST of mRNA_Ecto-sp13_S_contig11943.1657.1 vs. uniprot
Match: D7FHA3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI) HSP 1 Score: 294 bits (752), Expect = 1.040e-89 Identity = 159/236 (67.37%), Postives = 178/236 (75.42%), Query Frame = 2
Query: 11 GDEKEEGASVPSPSTPPSLLPQEQQIGXXXXXXXXXXXXLGSPNQREEVVGERVRSPEHASLSPEAAAQVDRMFTGQLSSSAGLDSLIRENPEALEDIQRVLESTVAGSFYPDDERRDMERRRKLGTFVTMSNALGEVALRRTEDMDIQRKELALPPFSREYYTAIRTGLCEAYLAASVIDSDWMPTSKTGGMGKAGAALKLMSSAVPVIGGLTGQAGKALETEDHYVQTRRLVKV 718
GD++ + A VP P P LLPQ+QQI L SPNQR+EVV S AS SPE A +VDR+F QL SSAGLDSLIRENP ALE+IQ +E VAGSFYPD+E DM+ RR LGT VTMS ALGEVALR TEDM++QRKELALPPFS+ YYTAIRTGLC+AYLAAS IDSDW+ TSKTGGMGK GAALKLMSSAVP+IGGL AGKALE D Y+QTRRLVK+
Sbjct: 287 GDQRGKDAPVPPPXAPTVLLPQQQQIDAGDETEEDAPVLLDSPNQRQEVVAGSANSTGRASTSPEKAEEVDRLFRAQLVSSAGLDSLIRENPAALENIQLAIERQVAGSFYPDNELGDMQSRRNLGTLVTMSTALGEVALRHTEDMNVQRKELALPPFSKAYYTAIRTGLCKAYLAASAIDSDWVITSKTGGMGKVGAALKLMSSAVPLIGGLPKLAGKALEAGDTYLQTRRLVKI 522
BLAST of mRNA_Ecto-sp13_S_contig11943.1657.1 vs. uniprot
Match: D7FHA2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA2_ECTSI) HSP 1 Score: 286 bits (732), Expect = 8.410e-88 Identity = 145/196 (73.98%), Postives = 168/196 (85.71%), Query Frame = 2
Query: 131 GSPNQREEVVGERVRSPEHASLSPEAAAQVDRMFTGQLSSSAGLDSLIRENPEALEDIQRVLESTVAGSFYPDDERRDMERRRKLGTFVTMSNALGEVALRRTEDMDIQRKELALPPFSREYYTAIRTGLCEAYLAASVIDSDWMPTSKTGGMGKAGAALKLMSSAVPVIGGLTGQAGKALETEDHYVQTRRLVKV 718
GS N R E VGERVRSPEHASLSPE A + DR+F QLSSSAGLDSLIRENP ALEDIQRV+E++VAGS D+E DM+ RRKLGT VTMS ALGEV L+ TEDMD++R+EL LPPFS+ YYTA+RTG+C AYLAASVIDSDW+ TSKTGGMGKAGAALK+MS A+PV+GG TG AGKA+++ DHY+QTRRLVK+
Sbjct: 289 GSRNGRHEAVGERVRSPEHASLSPEKAEEADRVFKAQLSSSAGLDSLIRENPGALEDIQRVIEASVAGSVSVDNELSDMQSRRKLGTLVTMSTALGEVVLKHTEDMDVKREELTLPPFSKAYYTAVRTGICNAYLAASVIDSDWVSTSKTGGMGKAGAALKVMSRAIPVVGGPTGLAGKAMKSGDHYLQTRRLVKI 484
BLAST of mRNA_Ecto-sp13_S_contig11943.1657.1 vs. uniprot
Match: A0A6H5KZF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE) HSP 1 Score: 279 bits (713), Expect = 3.400e-82 Identity = 148/197 (75.13%), Postives = 162/197 (82.23%), Query Frame = 2
Query: 128 LGSPNQREEVVGERVRSPEHASLSPEAAAQVDRMFTGQLSSSAGLDSLIRENPEALEDIQRVLESTVAGSFYPDDERRDMERRRKLGTFVTMSNALGEVALRRTEDMDIQRKELALPPFSREYYTAIRTGLCEAYLAASVIDSDWMPTSKTGGMGKAGAALKLMSSAVPVIGGLTGQAGKALETEDHYVQTRRLVKV 718
LGSPNQREEVV E VRSPEHASLSPE A +VDR+F QLSSSAG DSLIRENPEALEDI RV+++ AGS DE DMERRRKLGT V M+ ALGEVAL TEDMD+QRKELAL PFS+ YYTA+R+GLC AYLAASVIDSDW+ T KTGGMGK G AL L+SSAVPVI GL G AGKAL T DH +QTRRLVK+
Sbjct: 403 LGSPNQREEVVREGVRSPEHASLSPEKAEEVDRLFRVQLSSSAGFDSLIRENPEALEDIHRVIKAPAAGSLDFVDEISDMERRRKLGTLVNMAKALGEVALSHTEDMDVQRKELALTPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTCKTGGMGKGGTALVLLSSAVPVISGLAGLAGKALRTGDHCLQTRRLVKI 599
BLAST of mRNA_Ecto-sp13_S_contig11943.1657.1 vs. uniprot
Match: D7FH89_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI) HSP 1 Score: 275 bits (703), Expect = 5.380e-81 Identity = 143/197 (72.59%), Postives = 161/197 (81.73%), Query Frame = 2
Query: 128 LGSPNQREEVVGERVRSPEHASLSPEAAAQVDRMFTGQLSSSAGLDSLIRENPEALEDIQRVLESTVAGSFYPDDERRDMERRRKLGTFVTMSNALGEVALRRTEDMDIQRKELALPPFSREYYTAIRTGLCEAYLAASVIDSDWMPTSKTGGMGKAGAALKLMSSAVPVIGGLTGQAGKALETEDHYVQTRRLVKV 718
L SP R+ VG RVRSPE+ASLSP AA+VDR+F QLSSSAGLDSLI+ENPEALEDIQRV+++ AG FY DDE DMERRRKLG + M+ ALGEVAL TED D+QRKELAL PFS+ YYTA+R+GLC AYLAASVIDSDW+ TSKTGGMGK G AL L+SSAVPVI GL G AGKAL T DHY+QTRRL K+
Sbjct: 443 LVSPTHRQAAVGGRVRSPENASLSPGKAAEVDRLFRVQLSSSAGLDSLIKENPEALEDIQRVIKAPAAGGFYFDDELSDMERRRKLGALMNMAKALGEVALSHTEDKDVQRKELALAPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTSKTGGMGKGGTALVLLSSAVPVISGLAGLAGKALRTGDHYLQTRRLAKI 639
BLAST of mRNA_Ecto-sp13_S_contig11943.1657.1 vs. uniprot
Match: A0A6H5KJV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJV0_9PHAE) HSP 1 Score: 251 bits (640), Expect = 2.740e-76 Identity = 142/231 (61.47%), Postives = 161/231 (69.70%), Query Frame = 2
Query: 143 QREEVVGERVRSPEHASLSPEAAAQVDRMFTGQLSSSAGLDSLIRENPEALEDIQRVLESTVAGSFYPDDERRDMERRRKLGTFVTMSNALGEVA-------------------------------LRRTEDMDIQRKELALPPFSREYYTAIRTGLCEAYLAASVIDSDWMPTSKTGGMGK---------AGAALKLMSSAVPVIGGLTGQAGKALETEDHYVQTRRLVK 715
QREEVV ERVRSPE ASLSPE +VDR+FT QLSS AGL+SL+RENPEALEDIQRV++STV SFYPDD+ DM+ RRKL T VTMS ALGEVA LR TEDMD+QRKE+ALP F + Y T +R+GLC+AYLA+SVIDSDW+ SKTGGMGK AGAA+KLMS AVPV+GGL AGKALE DH+ QTRRLVK
Sbjct: 135 QREEVVRERVRSPERASLSPEKTEEVDRLFTAQLSSHAGLNSLVRENPEALEDIQRVIQSTVVRSFYPDDKHSDMDGRRKLATLVTMSTALGEVAVSPVRGTIPSACTSNGLTSFSVRNWCRIWNVLRHTEDMDVQRKEMALPLFLKAYCTVVRSGLCQAYLASSVIDSDWVSMSKTGGMGKVGAALGSKSAGAAVKLMSRAVPVVGGLPELAGKALEAGDHFFQTRRLVK 365
BLAST of mRNA_Ecto-sp13_S_contig11943.1657.1 vs. uniprot
Match: D7FH88_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH88_ECTSI) HSP 1 Score: 214 bits (545), Expect = 7.110e-63 Identity = 123/199 (61.81%), Postives = 137/199 (68.84%), Query Frame = 2
Query: 17 EKEEGASVPSPSTPPSLLPQEQQIGXXXXXXXXXXXXLGSPNQREEVVGERVRSPEHASLSPEAAAQVDRMFTGQLSSSAGLDSLIRENPEALEDIQRVLESTVAGSFYPDDERRDMERRRKLGTFVTMSNALGEVALRRTEDMDIQRKELALPPFSREYYTAIRTGLCEAYLAASVIDSDWMPTSKTGGMGKAGAALK 613
+KE A P LLP G LGSP Q EEV ER S EH SLS E A + R+F QLSSSA LDSLI ENPEALEDIQRV+ES V GS PDDER DMER R+LGT +MS ALGEV L+ TEDMD+Q+KELALP F R YYTA+RTGLCEAYLAASVI+SDW+ TSKTGGMGK G A++
Sbjct: 239 QKEARAPEPPXXXXXRLLPXXXXAGESDEKEENAPMPLGSPTQGEEVALERTVSREHDSLSLEQA-EPGRLFRVQLSSSAWLDSLIGENPEALEDIQRVIESQVPGSVSPDDERSDMERHRELGTLASMSTALGEVVLKHTEDMDVQQKELALPAFWRAYYTAVRTGLCEAYLAASVINSDWVSTSKTGGMGKVGVAVR 436
BLAST of mRNA_Ecto-sp13_S_contig11943.1657.1 vs. uniprot
Match: A0A6H5JDK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDK8_9PHAE) HSP 1 Score: 165 bits (417), Expect = 9.820e-45 Identity = 109/241 (45.23%), Postives = 128/241 (53.11%), Query Frame = 2
Query: 17 EKEEGASVPSPSTPPSLLPQEQQIGXXXXXXXXXXXXLGSPNQREEVVGERVRSPEHASLSPEAAAQVDRMFTGQLSSSAGLDSLIRENPEALEDIQRVLESTVAGSFYPDDERRDMERRRKLGTFVTMSNALGEVALRRTEDMDIQRKELALPPFSREYYTAIRTGLCEAYLAASVIDSDWMPTSKTGGMGKAGAAL--------KLMSSAVPVIGGLTGQAGKALETEDHYVQTRRLVK 715
+KE A P PSTPP LLPQ+Q+ G LGS Q EEV+ +R S EHA LSP +VDR F QLSSSAGL S IRENPE+LED +T G+ P F YYTA+RTGLCE YLAASVI+SDW+ SKTG +G+ GAA+ KL+SS VPV+GGL AGKALE DHY+Q+RRLVK
Sbjct: 76 QKEAQAPEPPPSTPPRLLPQQQEAGESDQKEENAPMPLGSSTQGEEVMEDRAPSLEHAFLSPRKEQEVDRFFRAQLSSSAGLGSPIRENPESLED-----NATHGGTS---------------------------------------------PAFWSVYYTAVRTGLCEGYLAASVINSDWVSASKTGSIGEVGAAVRARARAAFKLLSSTVPVVGGLPELAGKALEIGDHYLQSRRLVK 266
BLAST of mRNA_Ecto-sp13_S_contig11943.1657.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI) HSP 1 Score: 135 bits (341), Expect = 5.230e-32 Identity = 76/169 (44.97%), Postives = 105/169 (62.13%), Query Frame = 2
Query: 212 AQVDRMFTGQLSSSAGLDSLIRENPEALEDIQRVLESTVAGSFYPDDERRDMERRRKLGTFVTMSNALGEVALRRTEDMDIQRKELALPPFSREYYTAIRTGLCEAYLAASVIDSDWMPTSKTGGMGKAGAALKLMSSAVPVIGGLTGQAGKALETEDHYVQTRRLVKV 718
A +D M Q+SS + L +L + + LE +++++E+ F P + +L V M+ LG++ R + DIQR+ELALPP + YYTAIRTGLC AYLAASV+ S + TSKTG MG AG L+ +SSAVPV+ GL G A AL+ D Y+QTRR+ K+
Sbjct: 404 ADMDHMTQAQISSFSALSTLCGGSHKRLEQVRQLVEALDINRFSPGTGLSETGTLGELNRLVAMAEDLGDMVSRHVMNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVCSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKI 572 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11943.1657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11943.1657.1 >prot_Ecto-sp13_S_contig11943.1657.1 ID=prot_Ecto-sp13_S_contig11943.1657.1|Name=mRNA_Ecto-sp13_S_contig11943.1657.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=228bp MFTGQLSSSAGLDSLIRENPEALEDIQRVLESTVAGSFYPDDERRDMERRback to top mRNA from alignment at Ecto-sp13_S_contig11943:1292..3237+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11943.1657.1 ID=mRNA_Ecto-sp13_S_contig11943.1657.1|Name=mRNA_Ecto-sp13_S_contig11943.1657.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1946bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11943:1292..3237+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11943:1292..3237+ >mRNA_Ecto-sp13_S_contig11943.1657.1 ID=mRNA_Ecto-sp13_S_contig11943.1657.1|Name=mRNA_Ecto-sp13_S_contig11943.1657.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=684bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11943:1292..3237+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |