mRNA_Ecto-sp13_S_contig11942.1656.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11942.1656.1
Unique NamemRNA_Ecto-sp13_S_contig11942.1656.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11942.1656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11942contigEcto-sp13_S_contig11942:475..1090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size616
Hectar predicted targeting categorysignal peptide
Exons1
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462632.349105-UTR-Ecto-sp13_S_contig11942:474..5821681462632.349105-UTR-Ecto-sp13_S_contig11942:474..582Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11942 475..582 +
1681462632.3694537-UTR-Ecto-sp13_S_contig11942:951..10901681462632.3694537-UTR-Ecto-sp13_S_contig11942:951..1090Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11942 952..1090 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462632.3584828-CDS-Ecto-sp13_S_contig11942:582..9511681462632.3584828-CDS-Ecto-sp13_S_contig11942:582..951Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11942 583..951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11942.1656.1prot_Ecto-sp13_S_contig11942.1656.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11942 583..951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11942.1656.1

>prot_Ecto-sp13_S_contig11942.1656.1 ID=prot_Ecto-sp13_S_contig11942.1656.1|Name=mRNA_Ecto-sp13_S_contig11942.1656.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
MNKWPHSFLVPLLGRGIFTARVTPAMPCGSTHVHTTLTWRGQDHANGGAF
VFHFHADRQDTFHIPHLPRQFVPYRFSLARSTRVVRRHACISEHIHSLIT
TNEKMTCFGKGAMRGTGPVMKL*
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mRNA from alignment at Ecto-sp13_S_contig11942:475..1090+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11942.1656.1 ID=mRNA_Ecto-sp13_S_contig11942.1656.1|Name=mRNA_Ecto-sp13_S_contig11942.1656.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=616bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11942:475..1090+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGAGAGATAAACAAAACACAAATAAACGGAACTCACCCTCCGCTCTGT
AAGCGATGCCAAACAACTGGATACAACAGTAGAGAATCAAACATCACCGA
TCAATACAATGAACAAATGGCCTCACTCTTTCCTTGTACCGCTACTGGGT
AGAGGTATATTCACCGCCCGGGTTACACCTGCCATGCCATGCGGTTCTAC
CCACGTACACACCACCTTAACGTGGAGGGGTCAAGATCACGCCAACGGTG
GTGCCTTCGTTTTCCACTTCCATGCGGACAGACAAGATACCTTTCATATC
CCCCATTTGCCGAGACAGTTCGTCCCATACAGGTTCTCGCTGGCCAGGTC
CACCCGTGTCGTACGCAGACACGCATGCATATCAGAACACATACATAGCT
TGATAACAACAAATGAAAAAATGACATGCTTCGGAAAGGGGGCAATGAGA
GGAACAGGGCCAGTGATGAAACTGTGAACGAAAAAATTGGCTGGTATTCT
GAATACCCAGTCCGGCATGTGACACGCTACACGTTCTATCTCCGAATTGC
TGTCTTCAGAGTGGCTCTTGTTGCCAGAATGTCCCATCAAAGAGAATATC
CAACACCGCAAATGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11942:475..1090+

>mRNA_Ecto-sp13_S_contig11942.1656.1 ID=mRNA_Ecto-sp13_S_contig11942.1656.1|Name=mRNA_Ecto-sp13_S_contig11942.1656.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11942:475..1090+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACAAATGGCCTCACTCTTTCCTTGTACCGCTACTGGGTAGAGGTAT
ATTCACCGCCCGGGTTACACCTGCCATGCCATGCGGTTCTACCCACGTAC
ACACCACCTTAACGTGGAGGGGTCAAGATCACGCCAACGGTGGTGCCTTC
GTTTTCCACTTCCATGCGGACAGACAAGATACCTTTCATATCCCCCATTT
GCCGAGACAGTTCGTCCCATACAGGTTCTCGCTGGCCAGGTCCACCCGTG
TCGTACGCAGACACGCATGCATATCAGAACACATACATAGCTTGATAACA
ACAAATGAAAAAATGACATGCTTCGGAAAGGGGGCAATGAGAGGAACAGG
GCCAGTGATGAAACTGTGA
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