mRNA_Ecto-sp13_S_contig1194.1654.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1194.1654.1 vs. uniprot
Match: D7FM15_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM15_ECTSI) HSP 1 Score: 1392 bits (3603), Expect = 0.000e+0 Identity = 789/963 (81.93%), Postives = 806/963 (83.70%), Query Frame = 1
Query: 1 QKTMPAEPPTSLEYLFRRWGLDPALRHYHCRSLGIEHLYPWQARCLALPGVREGRQDLLYFAPTSGGKTMVAELLLLLRIMGLPLARSTGEGEDEXXXXXXXXXXVVESGATTGLPRKDQTATTRRAIIVLPFVSMVTEKTKHLQSIVAPYNRGRPKKPRIQASSSQQHHRQALHGAKGGDLKHAQIAVCTIEKANGLVNRMAAADELHELSCLVVDELHMIGDGGRGQILELLLAKARRDRRAHGKYLEAPLPNSARACVVRANRGAAVAPAVPQAKTGAGVGGNKPAPPRQHTQQIVGMSATLSNGAELAKWLSATLHVSDFRPIPLDERIVLGMRVYDKEGSVVREFSAPAHPQSDPDHVVTLCSRESCRAGDQVIIFCSTKQFCHNCALKVAKNLEVPASKSAASKRSALMAQLAKEMAMGVDPILQASIRHGFERKTIETIPHGVAFHHAGLADTERSAIEKAFRSGTLDVLAATSTLGAGVNLPAGRVILRNINAVGGGLSATSYRQMAGRAGRKGAGRARGEALLIAANKGQAARATGLMNAGLAAVRSALTPTADGGMGLTRMVLEAVCGKLIRTRADL----PML----LKCTLIFHQQPDEAARDRLHDYAWAAIQLLIDEGCVELIQPPTPAVAEPIATATTXXXXXXXXXXXXXXXXXXXXXXXXXXXKVGG-------NKRVADTATHVPATYVPVTKRSNPIAVGQKLGVQTPPVAHNATAAAARARRATAAMSSEVQDGDFRKDPRSSGGLGSANGVEEAGSDDRLLVPTKLGMAIFRSSMPPGDGLMIYRDLSEAKNGINLRHTLYLAYLLTPLSPPAGLKPNWERLRAMYASAQAAAAETPPGPNAHLVEDFHKIGITESQLHLWASRGPGGGTREAPLLSPTAVQQAXXXXXXXXXDDGRTGTRRDARESEENKPTGLNHAKRAVRLVAAMALKDVSDGHHLGQV 2844
+KTMP EPPTSLEYLFRRWGLDPALRHYH RSLGIEHLYPWQARCLALPGV EGRQDLLYFAPTSGGKTMVAELLLLLR+MGLPLA STGEGEDE XXXXX VVESGA TGLPRKDQTATTRRAIIVLPFVSMVTEK KHLQSIVAPYNRGRPKK RIQ +ALHGAKGGDLK AQIAVCTIEKANGLVNRMAAADELHELSCLVVDELHMIGDGGRGQILELLLAK VVRANRGAAVAPAVPQA+T A VG N+PAPPRQHTQ IVGMSATLSNGAELAKWL ATLHVSDFRPIPLDER+VLGM VYDKEG VVREF+APAHPQSDPDHVVTLC RESCRAGDQVIIFCSTKQFCHNCALK ETIPHGVAFHHAGLADTERSAIEKAFRSGTLDVLAATSTLGAGVNLPAGRVILRNINAVGGGLSATSYRQMAGRAGRKGAGRARGEALLIAANKGQAARATGLMNAGLAAVRSALTPTADGG G TRM LEAVCGKLIRTRADL P + + CTLIFHQQPDEAARDRLHDYAWAAIQLLIDEGCVELIQ PTPAVA+PIATAT XXXXXXXXXXXXXXXXXXX NKRVADTATHVPATYVP TKRS PI VGQKLGVQTPPV +N TAAAARARRATAAMS E Q GDFRK+PRS GGLGSA+GVEEAGSDDRLLVPTKLG+AIFRSSMPPGDGLMIYRDLSEAKNGINLRHTLYLAYLLTPLSPPAGLKPNWERLRAMYASAQAAAAETPPGPNAHLVEDFHKIGITESQLHLWASRGPGGGTREAPLLSPTAVQQA +DG+TGTRRDAR SEE KPTGLN AKRAVRLVAAMALKDVSDG+HLGQV
Sbjct: 8 EKTMPTEPPTSLEYLFRRWGLDPALRHYHGRSLGIEHLYPWQARCLALPGVAEGRQDLLYFAPTSGGKTMVAELLLLLRVMGLPLACSTGEGEDEGRAXXXXXAAVVESGAVTGLPRKDQTATTRRAIIVLPFVSMVTEKAKHLQSIVAPYNRGRPKKKRIQV--------RALHGAKGGDLKQAQIAVCTIEKANGLVNRMAAADELHELSCLVVDELHMIGDGGRGQILELLLAK-----------------------VVRANRGAAVAPAVPQAETDADVGSNQPAPPRQHTQ-IVGMSATLSNGAELAKWLGATLHVSDFRPIPLDERVVLGMHVYDKEGFVVREFAAPAHPQSDPDHVVTLC-RESCRAGDQVIIFCSTKQFCHNCALK-------------------------------------------------ETIPHGVAFHHAGLADTERSAIEKAFRSGTLDVLAATSTLGAGVNLPAGRVILRNINAVGGGLSATSYRQMAGRAGRKGAGRARGEALLIAANKGQAARATGLMNAGLAAVRSALTPTADGGTGFTRMFLEAVCGKLIRTRADLRTGCPAVSSPNITCTLIFHQQPDEAARDRLHDYAWAAIQLLIDEGCVELIQRPTPAVAKPIATATKATASASLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKRVADTATHVPATYVPATKRSKPIVVGQKLGVQTPPVVYNDTAAAARARRATAAMSCEAQHGDFRKEPRS-GGLGSASGVEEAGSDDRLLVPTKLGLAIFRSSMPPGDGLMIYRDLSEAKNGINLRHTLYLAYLLTPLSPPAGLKPNWERLRAMYASAQAAAAETPPGPNAHLVEDFHKIGITESQLHLWASRGPGGGTREAPLLSPTAVQQAASARRGGRGEDGKTGTRRDARGSEEKKPTGLNPAKRAVRLVAAMALKDVSDGYHLGQV 887
BLAST of mRNA_Ecto-sp13_S_contig1194.1654.1 vs. uniprot
Match: A0A6H5L306_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L306_9PHAE) HSP 1 Score: 1007 bits (2604), Expect = 0.000e+0 Identity = 625/958 (65.24%), Postives = 643/958 (67.12%), Query Frame = 1
Query: 10 MPAEPPTSLEYLFRRWGLDPALRHYHCRSLGIEHLYPWQARCLALPGVREGRQDLLYFAPTSGGKTMVAELLLLLRIMGLPLARSTGEGEDEXXXXXXXXXXVVESGATTGLPRKDQTATTRRAIIVLPFVSMVTEKTKHLQSIVAPYNRGRPKKPRIQASSSQQHHRQ-------------------------------ALHGAKGGDLKHAQIAVCTIEKANGLVNRMAAADELHELSCLVVDELHMIGDGGRGQILELLLAKARRDRRAHGKYLEAPLPNSARACVVRANRGAAVAPAVPQAKTGAGVGGNKPAPPRQHTQQIVGMSATLSNGAELAKWLSATLHVSDFRPIPLDERIVLGMRVYDKEGSVVREFSAPAHPQSDPDHVVTLCSRESCRAGDQVIIFCSTKQFCHNCALKVAKNLEVPASKSAASKRSALMAQLAKEMAMGVDPILQASIRHGFERKTIETIPHGVAFHHAGLADTERSAIEKAFRSGTLDVLAATSTLGAGVNLPAGRVILRNINAVGGGLSATSYRQMAGRAGRKGAGRARGEALLIAANKGQAARATGLMNAGLAAVRSAL------------------TPTADGGMGLTRMVLEAVCGKLIRTRADLP-MLLKCTLIFHQQPDEAARDRLHDYAWAAIQLLIDEGCVELIQPPTPAVAEPIATATTXXXXXXXXXXXXXXXXXXXXXXXXXXXKVGGNKRVADTATHVPATYVPVTKRSNPIAVGQKLGVQTPPVAHNATAAAARARRATAAMSSEVQDGDFRKDPRSSGGLGSANGVEEAGSDDRLLVPTKLGMAIFRSSMPPGDGLMIYRDLSEAKNGINLRHTLYLAYLLTPLSPPAGLKPNWERLRAMYASAQAAAAETPPGPNAHLVEDFHKIGITESQLHLWASRGPGGGTREAPLLSPTAVQQAXXXXXXXXXDDGRTGTRRDAR 2733
M AEPPTSLEYLFRRWGLDPALRH+H RSLGIEHLYPWQA CLALPGV EGRQDLLYFAPTSGGKTMVAELLLLLR+MGLPLARSTGEGED XXXXXXXXX VVESGA TGL RK +VLPFVSMVTEK KHLQSIVAPYNRGRPKK RIQASSSQQHHRQ ALHGAKGGDLKHAQIAVCTIEKANGLVNRMAAADELHELSCLVVDELHMIGDG RG VG NKPAP RQHTQ IVGMSATLSNGAELAKWL ATLHVSDFRPIPLDERIV VIIFCSTKQFCHNCALK ETIPHGVAFHHAGLADTERSAIEKAFRSG LDVLAATSTLGAGVNLPAGRVILRNINAVGGGLSAT + +G ++ + K R V S +P+A T A L+ R+ LP MLLKCTLIFHQQPDEAARDRLHDYAWAAIQLLIDEGCVELIQPPTPAV +PIATA XXXXXXXXXXXXXXXXXX NKRVADTATHVPATYVPVTKRS P VGQK+GVQTPPVAHN TAAAAR RRATAAMS E QDGDFRK+PRS GGLGS +GVEEAGSDDRLLVPTKLG+AIFRSSMPPGDGLMIYRDLSEAKNGINLRHTLYLAYLLTPLSPPAGLKPNWERLRAMYASAQAAAAETPPGPNAHLVED HKIGITESQLHLWASRGPGGGTREAPLLSPTAVQQA DDG+TGTRRD R
Sbjct: 1 MAAEPPTSLEYLFRRWGLDPALRHHHGRSLGIEHLYPWQASCLALPGVAEGRQDLLYFAPTSGGKTMVAELLLLLRVMGLPLARSTGEGEDXXXXXXXXXXAVVESGAITGLLRK----------VVLPFVSMVTEKAKHLQSIVAPYNRGRPKKQRIQASSSQQHHRQWGEAHHGDDYPARQKRPCVWIVRQIVLEQVRALHGAKGGDLKHAQIAVCTIEKANGLVNRMAAADELHELSCLVVDELHMIGDGRRG------------------------------------------------------VGSNKPAPLRQHTQ-IVGMSATLSNGAELAKWLGATLHVSDFRPIPLDERIV-------------------------------------------VIIFCSTKQFCHNCALK-------------------------------------------------ETIPHGVAFHHAGLADTERSAIEKAFRSGALDVLAATSTLGAGVNLPAGRVILRNINAVGGGLSATRFSSDVV---------VKGGSVAVLDQKKYTTRTARSAEPRFFNVFSCPVLATDEPPHVPTDPLHPPSPSALSSPRPTSACRYAYLKLLLMYRSCLPAMLLKCTLIFHQQPDEAARDRLHDYAWAAIQLLIDEGCVELIQPPTPAVPKPIATAAKAPASASLVAXXXXXXXXXXXXXXXXXXXXXXNKRVADTATHVPATYVPVTKRSKPTVVGQKVGVQTPPVAHNDTAAAARGRRATAAMSCEAQDGDFRKEPRS-GGLGSVSGVEEAGSDDRLLVPTKLGLAIFRSSMPPGDGLMIYRDLSEAKNGINLRHTLYLAYLLTPLSPPAGLKPNWERLRAMYASAQAAAAETPPGPNAHLVEDLHKIGITESQLHLWASRGPGGGTREAPLLSPTAVQQAASARRGGLGDDGKTGTRRDVR 791
BLAST of mRNA_Ecto-sp13_S_contig1194.1654.1 vs. uniprot
Match: W7U5L3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5L3_9STRA) HSP 1 Score: 310 bits (794), Expect = 9.460e-85 Identity = 233/653 (35.68%), Postives = 326/653 (49.92%), Query Frame = 1
Query: 31 SLEYLFRRWGLDPALRHYHCRSLGIEHLYPWQARCLALPGVREGRQDLLYFAPTSGGKTMVAELLLLLRIMGLPLARSTGEGEDEXXXXXXXXXXVVESGATTGLPRKDQTATTRRAIIVLPFVSMVTEKTKHLQSIVAPYNRGRPKKPRIQASSSQQHHRQALHGAKGG-DLKHAQIAVCTIEKANGLVNRMAAADELHELSCLVVDELHMIGDGGRGQILELLLAKARRDRRAHGKYLEAPLPNSARACVVRANRGAAVAPAVPQAKTGAGVGGNKPAPPRQHTQQIVGMSATLSNGAELAKWLSATLHVSDFRPIPLDERIVLGMRVYDKEGSVVREFSAPAHPQSDPDHVVTLCSRESCRAGDQVIIFCSTKQFCHNCALKVAKNLEV-----------------PASKSAASKRSALMAQLAKEMAMGVDPILQASIRHGFERKTIETIPHGVAFHHAGLADTERSAIEKAFRSGTLDVLAATSTLGAGVNLPAGRVILRNINAVGGGL-SATSYRQMAGRAGRKGAGRARGEALLIAANKGQAARATGLMNAGLAAVRSALTPTADGGMGLTRMVLEAVCGKLIRTRADLPMLLKCTLIFHQQPDEAAR-DRLHDYAWAAIQLLIDEGCVELIQPPTPAVAEPIATA 1929
S+E LF P R GI Y WQ +CL PGV G ++LLY APTSGGK+ VA++LLL R + T ++ ++VLPFV++V EK H +S+V+ YN + ++ ++ QA HG KGG QI +CTIEKAN LVN+M +++LSCLVVDELHM+ D RG +LELLL+K K+++A + RG + T A + + PP QI+G+SATL N E+A W+ A L + FRP+ L E G ++ +G +R + P DPDH+ TL E+ R G QV++FC ++ C NCA +A+ L V S R AL+ L +E +M V P L + IP G+AFHHAGL D E++A+E+AFR G L V+ ATSTLG G+NLPA RVI R + G + +SYRQMAGRAGR G + GE++L+A + AT LM L + S L P DGG L R +LEA+ ++ DL + L CTL Q+ + R + YA A++ L++ V+ Q P P+V ++T+
Sbjct: 103 SIEALFENVLELPVEMALAYRRRGIVRPYDWQCQCLQTPGVVTGERNLLYSAPTSGGKSFVADVLLLRRAIH----------------------------------------TRKKVLLVLPFVAVVREKVAHFKSLVSVYNARKRRREALRI--------QAFHGNKGGRGFGRCQIGICTIEKANALVNKMIQEGSINQLSCLVVDELHMMADQQRGYLLELLLSKL--------KFIKA---------LQHCRRGPS------DLTTDAAI--DNQGPPLD--VQIIGLSATLPNLEEVADWMDAALFHTSFRPVELQEMYKWGDALFAADGVCLRRLQSRRPPAEDPDHITTLVE-ETTRRGHQVLVFCHYRKHCENCATLLAEQLGVLPGAIMANAMTRQKKEDKESDDTVKMRKALLDDL-REHSMSVHPCL------------LLAIPKGIAFHHAGLTDHEKNALEEAFRRGVLSVIVATSTLGTGINLPAARVIFRTLRPGGNRVFDISSYRQMAGRAGRAGQQKY-GESILLARSPQDVKEATRLMTEPLHDLHSCLDPEQDGGRALVRAILEAIASGSLQKNDDLDIFLHCTLALRQRIRHSPRLNSFLYYARDALRYLVEHRIVK--QLPGPSVNAEVSTS 663
BLAST of mRNA_Ecto-sp13_S_contig1194.1654.1 vs. uniprot
Match: UPI0005239EA7 (DNA polymerase theta-like n=3 Tax=Neognathae TaxID=8825 RepID=UPI0005239EA7) HSP 1 Score: 277 bits (708), Expect = 3.150e-78 Identity = 212/587 (36.12%), Postives = 290/587 (49.40%), Query Frame = 1
Query: 43 LFRRWGLDPA-LRHYHCRSLGIEHLYPWQARCLALPGVREGRQDLLYFAPTSGGKTMVAELLLLLRIMGLPLARSTGEGEDEXXXXXXXXXXVVESGATTGLPRKDQTATTRRAIIVLPFVSMVTEKTKHLQSIVAPYNRGRPKKPRIQASSSQQHHRQALHGAKGGDLKHAQIAVCTIEKANGLVNRMAAADELHELSCLVVDELHMIGDGGRGQILELLLAKARRDRRAHGKYLEAPLPNSARACVVRANRGAAVAPAVPQAK-TGAGVGGNKPAPPRQHTQQIVGMSATLSNGAELAKWLSATLHVSDFRPIPLDERIVLGMRVYDKEGSVVREFSAPAHPQSDPDHVVTLCSRESCRAGDQVIIFCSTKQFCHNCALKVAKNLEVPASKSAASKRSALMAQLAKEMAMGVDPILQASIRH--GFERKTIETIPHGVAFHHAGLADTERSAIEKAFRSGTLDVLAATSTLGAGVNLPAGRVILRNINAVGGGLSATSYRQMAGRAGRKGAGRARGEALLIAANKGQAARATGLMNAGLAAVRSALTPTADGGMG--LTRMVLEAVCGKLIRTRADLPMLLKCTL 1785
L WGL A L YH SLG+ ++ WQA CL L V EG+ +L+Y APTS GKT+VAELL+L R++ T ++A+++LPFVS+V EK +LQ++ + R++ + G +AVCTIEKANGL+NR+ +++ L +VVDELHM+GD RG +LELLL K R Y+ + QAK T G GG QIVGMSATL N LA WL A L+ +DFRP+PL E + +G +YD ++V+EF + D DHVV+LC C G V++FC +K +C A +A+ +++K S L+ + G+D +L R G + T+P GVAFHHAGL ER IE AFR G + VLAATSTL +GVNLPA RVI+R G L +Y+QMAGRAGRKG GE++L+ + ++ T L+ L V S L G+ + R +LE + G + T D+ CTL
Sbjct: 16 LLASWGLPKAVLEKYH--SLGVVQMFDWQAECLMLGQVLEGK-NLVYSAPTSAGKTLVAELLILKRVL----------------------------------------ETRKKALLILPFVSVVKEKKCYLQTLFQEVD------VRVEGYMGSI--------SPAGRFSALDVAVCTIEKANGLINRLIEENKMDSLGVVVVDELHMLGDTHRGYLLELLLTKVR--------YVTEKVAKR-------------------QAKMTSPGFGGI----------QIVGMSATLPNLGLLASWLDAELYCTDFRPVPLKEWVKIGSNIYDSSMNLVQEFQPKLQLKGDEDHVVSLCYETVCD-GHSVLLFCPSKNWCEKLADIIAREFYSLQQAESSAKNSGLVPVVVDRE--GIDEVLDQLKRSISGLDSVLQRTLPWGVAFHHAGLTFDERDIIEGAFRQGLVRVLAATSTLSSGVNLPARRVIIRTPMFGGKLLDILTYKQMAGRAGRKGVD-TEGESILVC-KPSERSKGTALLQGSLKPVCSCLFRREGEGVSSSMKRAILEIIVGGVANTPDDVQTYASCTL 503
BLAST of mRNA_Ecto-sp13_S_contig1194.1654.1 vs. uniprot
Match: A0A1D6IVX2_MAIZE (Helicase and polymerase-containing protein TEBICHI n=4 Tax=Zea mays TaxID=4577 RepID=A0A1D6IVX2_MAIZE) HSP 1 Score: 283 bits (724), Expect = 2.150e-76 Identity = 207/591 (35.03%), Postives = 303/591 (51.27%), Query Frame = 1
Query: 100 GIEHLYPWQARCLALPGVREGRQDLLYFAPTSGGKTMVAELLLLLRIMGLPLARSTGEGEDEXXXXXXXXXXVVESGATTGLPRKDQTATTRRAIIVLPFVSMVTEKTKHLQSIVAPYNRGRPKKPRIQASSSQQHHRQALHGAKGGDL--KHAQIAVCTIEKANGLVNRMAAADELHELSCLVVDELHMIGDGGRGQILELLLAKARRDRRAHGKYLEAPLPNSARACV--VRANRGAAVAPAVPQAKTGAGVGGNKPAPPRQHTQQIVGMSATLSNGAELAKWLSATLHVSDFRPIPLDERIVLGMRVYDKEGSVVREFSAPA-HPQSDPDHVVTLCSRESCRAGDQVIIFCSTKQFCHNCALKVAKNLEVPA----SKSAASKRSALMAQLAKEMAMGVDPILQASIRHGFERKTIETIPHGVAFHHAGLADTERSAIEKAFRSGTLDVLAATSTLGAGVNLPAGRVILRNINAVGGGLSATSYRQMAGRAGRKGAGRARGEALLIAANKGQAARATGLMNAGLAAVRSALTPTADGGMGLTRMVLEAVCGKLIRTRADLPMLLKCTLIFHQQP-DEAARDRLHDYAW 1842
GI LYPWQ CL + GV G+++L+Y A TS GK+ VAE+L+L +I+ STG AI+VLP+VS+ EK +HL+ ++ P R H ++ +G +GG K +AVCTIEKAN LVN++ L EL +V+DELHM+GD RG +LEL+L K R A G+ + ++C V ++ +A H QI+GMSAT+ N A +A WL A L+ +DFRP+PL+E I +G +++DK+ +VVR A H DPDH+V LC+ E G V++FCS+++ C + A VAK L++P+ S+ +A + + G+DPIL ET+P GVA+HHAGL ER +E +R G + VL ATSTL AGVNLPA RVI R + T YRQMAGRAGR G +GE++L+ + + R TG++ + + S L+ +G +T ++E V G +++T D+ ++CTL+ +P D+ + W
Sbjct: 501 GISELYPWQVECLLVEGVL-GKRNLVYCASTSAGKSFVAEVLMLRQIL------STGN----------------------------------MAILVLPYVSICAEKAEHLEQLLEPLGR----------------HVRSFYGNQGGGSLPKDTAVAVCTIEKANSLVNKLLEDGRLSELGVIVIDELHMVGDQHRGYLLELMLTKL---RYAAGE-------GTLQSCSGEVSSSSSGKIA---------------------SHGLQIIGMSATMPNIAAVADWLQAALYQTDFRPVPLEEFIKVGNQIFDKDMNVVRVLPKVADHGGKDPDHIVELCN-EVVLQGHSVLLFCSSRKGCESTARHVAKFLKLPSVGTTDVSSEFSDAAAAIEALRRCPAGLDPILG------------ETLPFGVAYHHAGLTVEEREIVESCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPKIGRDFIDGTRYRQMAGRAGRTGID-TKGESILVCRPE-EVKRVTGIIRSNCPPLESCLSEDKNG---MTHAIMEVVAGGIVQTANDIHRYVRCTLLNSTRPFDDVVKSAQDSLRW 985
BLAST of mRNA_Ecto-sp13_S_contig1194.1654.1 vs. uniprot
Match: UPI001F5D1151 (helicase and polymerase-containing protein TEBICHI n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D1151) HSP 1 Score: 284 bits (726), Expect = 4.540e-76 Identity = 205/589 (34.80%), Postives = 302/589 (51.27%), Query Frame = 1
Query: 100 GIEHLYPWQARCLALPGVREGRQDLLYFAPTSGGKTMVAELLLLLRIMGLPLARSTGEGEDEXXXXXXXXXXVVESGATTGLPRKDQTATTRRAIIVLPFVSMVTEKTKHLQSIVAPYNRGRPKKPRIQASSSQQHHRQALHGAKGGDL--KHAQIAVCTIEKANGLVNRMAAADELHELSCLVVDELHMIGDGGRGQILELLLAKARRDRRAHGKYLEAPLPNSARACVVRANRGAAVAPAVPQAKTGAGVGGNKPAPPRQHTQQIVGMSATLSNGAELAKWLSATLHVSDFRPIPLDERIVLGMRVYDKEGSVVREFSAPAH-PQSDPDHVVTLCSRESCRAGDQVIIFCSTKQFCHNCALKVAKNLEVPASKS----AASKRSALMAQLAKEMAMGVDPILQASIRHGFERKTIETIPHGVAFHHAGLADTERSAIEKAFRSGTLDVLAATSTLGAGVNLPAGRVILRNINAVGGGLSATSYRQMAGRAGRKGAGRARGEALLIAANKGQAARATGLMNAGLAAVRSALTPTADGGMGLTRMVLEAVCGKLIRTRADLPMLLKCTLIFHQQP-DEAARDRLHDYAW 1842
GI LYPWQ CL + GV E R +L+Y A TS GK+ VAE+L+L RI+ ++ + AI+VLP+VS+ EK +HL+ ++AP R H ++ +G +GG K +AVCTIEKAN LVN++ L EL +V+DELHM+GD RG +LEL+L K R A G+ + + KTGA H QI+GMSAT+ N +A WL A L+ + FRP+PL+E I +G +++DK+ ++VR A DPDH+V LC+ E G V++FCS+++ C + A +AK L+V + +S + + +A + K G+DP+L+ ETIP GVA+HHAGL ER +E +R G + VL ATSTL AGVNLPA RVI R + T YRQMAGRAGR G +GE++L+ + + R TG++ + A++S L+ +G +T ++E V G +++T +D+ ++CTL+ +P D+ + W
Sbjct: 378 GIPGLYPWQVECLLVDGVLEKR-NLVYCASTSAGKSFVAEVLMLRRIL----------------------------------------SSQKIAILVLPYVSLCAEKAEHLEQLLAPLGR----------------HVRSYYGNQGGGSLPKDTSVAVCTIEKANSLVNKLLEDGRLSELGIIVIDELHMVGDQHRGYLLELMLTKL---RYAAGEG--------------NSESSSGETSXXXXXKTGA-----------THGLQIIGMSATMPNVGAVADWLQAALYQTSFRPVPLEEFIKVGNQIFDKDMNIVRVLPKVADLGGKDPDHIVALCN-EVVLEGHSVLLFCSSRKGCESTARHIAKYLKVASGRSKEVGSEFRDAASAVEALKRCPAGLDPVLE------------ETIPFGVAYHHAGLTVEERDIVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYRQMAGRAGRTGID-TKGESILVCRPE-EVKRITGIVKSDCPALQSCLSEDKNG---MTHAIMEVVAGGIVQTASDIHRYVRCTLLNSTKPFDDVVKSAQDSLRW 863
BLAST of mRNA_Ecto-sp13_S_contig1194.1654.1 vs. uniprot
Match: A0A1D6IVX9_MAIZE (Helicase and polymerase-containing protein TEBICHI n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6IVX9_MAIZE) HSP 1 Score: 283 bits (724), Expect = 6.830e-76 Identity = 207/591 (35.03%), Postives = 303/591 (51.27%), Query Frame = 1
Query: 100 GIEHLYPWQARCLALPGVREGRQDLLYFAPTSGGKTMVAELLLLLRIMGLPLARSTGEGEDEXXXXXXXXXXVVESGATTGLPRKDQTATTRRAIIVLPFVSMVTEKTKHLQSIVAPYNRGRPKKPRIQASSSQQHHRQALHGAKGGDL--KHAQIAVCTIEKANGLVNRMAAADELHELSCLVVDELHMIGDGGRGQILELLLAKARRDRRAHGKYLEAPLPNSARACV--VRANRGAAVAPAVPQAKTGAGVGGNKPAPPRQHTQQIVGMSATLSNGAELAKWLSATLHVSDFRPIPLDERIVLGMRVYDKEGSVVREFSAPA-HPQSDPDHVVTLCSRESCRAGDQVIIFCSTKQFCHNCALKVAKNLEVPA----SKSAASKRSALMAQLAKEMAMGVDPILQASIRHGFERKTIETIPHGVAFHHAGLADTERSAIEKAFRSGTLDVLAATSTLGAGVNLPAGRVILRNINAVGGGLSATSYRQMAGRAGRKGAGRARGEALLIAANKGQAARATGLMNAGLAAVRSALTPTADGGMGLTRMVLEAVCGKLIRTRADLPMLLKCTLIFHQQP-DEAARDRLHDYAW 1842
GI LYPWQ CL + GV G+++L+Y A TS GK+ VAE+L+L +I+ STG AI+VLP+VS+ EK +HL+ ++ P R H ++ +G +GG K +AVCTIEKAN LVN++ L EL +V+DELHM+GD RG +LEL+L K R A G+ + ++C V ++ +A H QI+GMSAT+ N A +A WL A L+ +DFRP+PL+E I +G +++DK+ +VVR A H DPDH+V LC+ E G V++FCS+++ C + A VAK L++P+ S+ +A + + G+DPIL ET+P GVA+HHAGL ER +E +R G + VL ATSTL AGVNLPA RVI R + T YRQMAGRAGR G +GE++L+ + + R TG++ + + S L+ +G +T ++E V G +++T D+ ++CTL+ +P D+ + W
Sbjct: 118 GISELYPWQVECLLVEGVL-GKRNLVYCASTSAGKSFVAEVLMLRQIL------STGN----------------------------------MAILVLPYVSICAEKAEHLEQLLEPLGR----------------HVRSFYGNQGGGSLPKDTAVAVCTIEKANSLVNKLLEDGRLSELGVIVIDELHMVGDQHRGYLLELMLTKL---RYAAGE-------GTLQSCSGEVSSSSSGKIA---------------------SHGLQIIGMSATMPNIAAVADWLQAALYQTDFRPVPLEEFIKVGNQIFDKDMNVVRVLPKVADHGGKDPDHIVELCN-EVVLQGHSVLLFCSSRKGCESTARHVAKFLKLPSVGTTDVSSEFSDAAAAIEALRRCPAGLDPILG------------ETLPFGVAYHHAGLTVEEREIVESCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPKIGRDFIDGTRYRQMAGRAGRTGID-TKGESILVCRPE-EVKRVTGIIRSNCPPLESCLSEDKNG---MTHAIMEVVAGGIVQTANDIHRYVRCTLLNSTRPFDDVVKSAQDSLRW 602
BLAST of mRNA_Ecto-sp13_S_contig1194.1654.1 vs. uniprot
Match: UPI0004F4EB85 (LOW QUALITY PROTEIN: DNA polymerase theta n=1 Tax=Pygoscelis adeliae TaxID=9238 RepID=UPI0004F4EB85) HSP 1 Score: 283 bits (725), Expect = 6.940e-76 Identity = 214/588 (36.39%), Postives = 292/588 (49.66%), Query Frame = 1
Query: 43 LFRRWGLDPA-LRHYHCRSLGIEHLYPWQARCLALPGVREGRQDLLYFAPTSGGKTMVAELLLLLRIMGLPLARSTGEGEDEXXXXXXXXXXVVESGATTGLPRKDQTATTRRAIIVLPFVSMVTEKTKHLQSIVAPYNRGRPKKPRIQASSSQQHHRQALHGAKGGDLKHAQIAVCTIEKANGLVNRMAAADELHELSCLVVDELHMIGDGGRGQILELLLAKARRDRRAHGKYLEAPLPNSARACVVRANRGAAVAPAVPQAK-TGAGVGGNKPAPPRQHTQQIVGMSATLSNGAELAKWLSATLHVSDFRPIPLDERIVLGMRVYDKEGSVVREFSAPAHPQSDPDHVVTLCSRESCRAGDQVIIFCSTKQFCHNCALKVAKNLEVPASKSAASKRSALMAQLAKEMAMGVDPILQASIRH--GFERKTIETIPHGVAFHHAGLADTERSAIEKAFRSGTLDVLAATSTLGAGVNLPAGRVILRNINAVGGGLSATSYRQMAGRAGRKGAGRARGEALLIAANKGQAARATGLMNAGLAAVRSALTPTADGGMG--LTRMVLEAVCGKLIRTRADLPMLLKCTLI 1788
L WGL A L YH SLG+ ++ WQA CL L V EG+ +L+Y APTS GKT+VAELL+L R++ T ++A+++LPFVS+ EK +LQ++ + R++ + G +AVCTIEKANGL+NR+ +++ L +VVDELHM+GD RG +LELLLAK R Y+ + QAK TG G G QIVGMSATL N LA WL A L+ +DFRP+PL E + +G +YD ++VREF + D DHVV+LC C G V++FC +K +C A +A+ +++K SAL + G++ +L R G + T+P GVAFHHAGL ER IE AFR G + VLAATSTL +GVNLPA RVI+R G L +Y+QMAGRAGRKG GE++L+ + ++ T L+ L V S L G+ + R +LE + G + T D+ M CTL+
Sbjct: 44 LLASWGLPKAVLEKYH--SLGVVQMFEWQAECLMLGQVLEGK-NLVYSAPTSAGKTLVAELLILKRVL----------------------------------------ETRKKALLILPFVSVAKEKKCYLQALFQEVD------VRVEGYMGSM--------SPAGRFSGLDVAVCTIEKANGLINRLIEENKMDSLGVVVVDELHMVGDSHRGYLLELLLAKVR--------YVTEKVAKR-------------------QAKMTGPGFAGI----------QIVGMSATLPNLGLLASWLDAELYCTDFRPVPLKEWVKIGSNIYDSSMNLVREFQPKLQLKGDEDHVVSLCYETVCD-GHSVLLFCPSKNWCEKLADIIAREFYSLQQAESSAKNSALSPVVVDRE--GINEVLDQLKRSLSGLDSVLQRTLPWGVAFHHAGLTFDERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIRTPMFGGKLLDILTYKQMAGRAGRKGVD-TEGESILVC-KPSEKSKGTALLQGSLKPVCSCLLRREGEGVASSMKRAILEIIVGGVANTPDDVQMYASCTLL 532
BLAST of mRNA_Ecto-sp13_S_contig1194.1654.1 vs. uniprot
Match: A0A1D6IVY0_MAIZE (Helicase and polymerase-containing protein TEBICHI n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6IVY0_MAIZE) HSP 1 Score: 283 bits (724), Expect = 7.010e-76 Identity = 207/591 (35.03%), Postives = 303/591 (51.27%), Query Frame = 1
Query: 100 GIEHLYPWQARCLALPGVREGRQDLLYFAPTSGGKTMVAELLLLLRIMGLPLARSTGEGEDEXXXXXXXXXXVVESGATTGLPRKDQTATTRRAIIVLPFVSMVTEKTKHLQSIVAPYNRGRPKKPRIQASSSQQHHRQALHGAKGGDL--KHAQIAVCTIEKANGLVNRMAAADELHELSCLVVDELHMIGDGGRGQILELLLAKARRDRRAHGKYLEAPLPNSARACV--VRANRGAAVAPAVPQAKTGAGVGGNKPAPPRQHTQQIVGMSATLSNGAELAKWLSATLHVSDFRPIPLDERIVLGMRVYDKEGSVVREFSAPA-HPQSDPDHVVTLCSRESCRAGDQVIIFCSTKQFCHNCALKVAKNLEVPA----SKSAASKRSALMAQLAKEMAMGVDPILQASIRHGFERKTIETIPHGVAFHHAGLADTERSAIEKAFRSGTLDVLAATSTLGAGVNLPAGRVILRNINAVGGGLSATSYRQMAGRAGRKGAGRARGEALLIAANKGQAARATGLMNAGLAAVRSALTPTADGGMGLTRMVLEAVCGKLIRTRADLPMLLKCTLIFHQQP-DEAARDRLHDYAW 1842
GI LYPWQ CL + GV G+++L+Y A TS GK+ VAE+L+L +I+ STG AI+VLP+VS+ EK +HL+ ++ P R H ++ +G +GG K +AVCTIEKAN LVN++ L EL +V+DELHM+GD RG +LEL+L K R A G+ + ++C V ++ +A H QI+GMSAT+ N A +A WL A L+ +DFRP+PL+E I +G +++DK+ +VVR A H DPDH+V LC+ E G V++FCS+++ C + A VAK L++P+ S+ +A + + G+DPIL ET+P GVA+HHAGL ER +E +R G + VL ATSTL AGVNLPA RVI R + T YRQMAGRAGR G +GE++L+ + + R TG++ + + S L+ +G +T ++E V G +++T D+ ++CTL+ +P D+ + W
Sbjct: 118 GISELYPWQVECLLVEGVL-GKRNLVYCASTSAGKSFVAEVLMLRQIL------STGN----------------------------------MAILVLPYVSICAEKAEHLEQLLEPLGR----------------HVRSFYGNQGGGSLPKDTAVAVCTIEKANSLVNKLLEDGRLSELGVIVIDELHMVGDQHRGYLLELMLTKL---RYAAGE-------GTLQSCSGEVSSSSSGKIA---------------------SHGLQIIGMSATMPNIAAVADWLQAALYQTDFRPVPLEEFIKVGNQIFDKDMNVVRVLPKVADHGGKDPDHIVELCN-EVVLQGHSVLLFCSSRKGCESTARHVAKFLKLPSVGTTDVSSEFSDAAAAIEALRRCPAGLDPILG------------ETLPFGVAYHHAGLTVEEREIVESCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPKIGRDFIDGTRYRQMAGRAGRTGID-TKGESILVCRPE-EVKRVTGIIRSNCPPLESCLSEDKNG---MTHAIMEVVAGGIVQTANDIHRYVRCTLLNSTRPFDDVVKSAQDSLRW 602
BLAST of mRNA_Ecto-sp13_S_contig1194.1654.1 vs. uniprot
Match: H3DKC6_TETNG (Uncharacterized protein n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3DKC6_TETNG) HSP 1 Score: 271 bits (694), Expect = 8.290e-76 Identity = 205/597 (34.34%), Postives = 291/597 (48.74%), Query Frame = 1
Query: 43 LFRRWGLD-PALRHYHCRSLGIEHLYPWQARCLALPGVREGRQDLLYFAPTSGGKTMVAELLLLLRIMGLPLARSTGEGEDEXXXXXXXXXXVVESGATTGLPRKDQTATTRRAIIVLPFVSMVTEKTKHLQSIVAPYNRGRPKKPRIQASSSQQHHRQALHGAKGGDLKHAQIAVCTIEKANGLVNRMAAADELHELSCLVVDELHMIGDGGRGQILELLLAKARRDRRAHGKYLEAPLPNSARACVVRANRGAAVAPAVPQAKTGAGVGGNKPAPPRQHTQQIVGMSATLSNGAELAKWLSATLHVSDFRPIPLDERIVLGMRVYDKEGSVVREFSAPAHPQSDPDHVVTLCSRESCRAGDQVIIFCSTKQFCHNCALKVAKNL------------EVPASKSAASKRSALMAQLAKEMAMGVDPILQASIRHGFERKTIETIPHGVAFHHAGLADTERSAIEKAFRSGTLDVLAATSTLGAGVNLPAGRVILRNINAVGGGLSATSYRQMAGRAGRKGAGRARGEALLIAANKGQAARATGLMNAGLAAVRSALTPTADGGM--GLTRMVLEAVCGKLIRTRADLPMLLKCTLI 1788
L WGL P L Y R G+ H++ WQA+CL + V +G +L+Y APTS GKT+V+ELL+L R++ T R+A+++LPFVS+ EK +LQS+ R++ + + G +AVCTIEKAN L+NR+ + + L +VVDELHM+GD GRG +LELLL K C + + A G+ QI+GMSATL N + LA WL A L+ +D+RP+PL E + +G +VYDK+ SVVR+F+ + Q D DH+V+LC E+ R G V++FC +K +C A +A+ E+P ++AQL + A G+D ILQ T+P GVAFHHAGL ER +E AFR G + VLAATSTL +GVNLPA RVI+R G L +Y+QM+GRAGRKG GE+LL+ + + + L+ L + S L G+ + R +LE + G + T D+ + C+L+
Sbjct: 9 LLSSWGLPKPVLERY--RKHGVMHMFEWQAQCLTVGQVLQGA-NLVYSAPTSAGKTLVSELLMLKRVL----------------------------------------ETKRKALLILPFVSVAKEKMHYLQSVFEEAG------VRVEGYMG--------NVSAAGGFTSLDVAVCTIEKANSLINRLIEEENMGLLGMVVVDELHMVGDSGRGYLLELLLTKI---------------------CYIAQKQNTA-------GSLSEGI-------------QIIGMSATLPNLSLLASWLCAELYQTDYRPVPLQEHLKVGCKVYDKDLSVVRQFTPALNVQGDDDHIVSLCY-ETVREGCSVLLFCPSKNWCEKLADSIAREFYNLRNSEHSNEAELPPVSLDQQGLVDVVAQLGRTPA-GLDSILQ------------RTVPWGVAFHHAGLTFDERDVLEGAFRQGLVRVLAATSTLSSGVNLPARRVIVRTPTFNGHLLDPLTYKQMSGRAGRKGVDTI-GESLLVC-KEAERHKGISLLKGSLQPISSCLVRREGEGVTTSMLRAILEIIVGGVASTPQDVRLYASCSLL 491 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1194.1654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1194.1654.1 >prot_Ecto-sp13_S_contig1194.1654.1 ID=prot_Ecto-sp13_S_contig1194.1654.1|Name=mRNA_Ecto-sp13_S_contig1194.1654.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=945bp MPAEPPTSLEYLFRRWGLDPALRHYHCRSLGIEHLYPWQARCLALPGVREback to top mRNA from alignment at Ecto-sp13_S_contig1194:8246..18466+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1194.1654.1 ID=mRNA_Ecto-sp13_S_contig1194.1654.1|Name=mRNA_Ecto-sp13_S_contig1194.1654.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=10221bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1194:8246..18466+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1194:8246..18466+ >mRNA_Ecto-sp13_S_contig1194.1654.1 ID=mRNA_Ecto-sp13_S_contig1194.1654.1|Name=mRNA_Ecto-sp13_S_contig1194.1654.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2835bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1194:8246..18466+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |