mRNA_Ecto-sp13_S_contig11939.1652.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11939.1652.1
Unique NamemRNA_Ecto-sp13_S_contig11939.1652.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11939.1652.1 vs. uniprot
Match: A0A6H5JDR2_9PHAE (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDR2_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 3.790e-30
Identity = 75/107 (70.09%), Postives = 83/107 (77.57%), Query Frame = 1 
Query:   76 MERDQQQRQVSGRGLETGRLPTIPCSSNSNPATNTLPWRERRRARQSQPLRRPSAATTGLASATAIRTAMTTIACVVVAGVFLAVRSPHGIRPLQRGEEAAPPTRTG 396
            MERDQQQRQV GRGLE+GRL T P   +SNPAT+T PWRE+R AR+  PLRRPSA T+GLASAT          CVVVAGVFLAVRSP+GI+PLQRGEEA PPT  G
Sbjct:    1 MERDQQQRQVPGRGLESGRLSTTP---SSNPATDTQPWREQRWARRPPPLRRPSATTSGLASATXXXXXXXXXXCVVVAGVFLAVRSPNGIQPLQRGEEA-PPTSAG 103
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11939.1652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDR2_9PHAE3.790e-3070.09Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11939contigEcto-sp13_S_contig11939:2935..3531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size599
Hectar predicted targeting categoryother localisation
Exons1
Cds size597
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462631.964489-CDS-Ecto-sp13_S_contig11939:2934..35311681462631.964489-CDS-Ecto-sp13_S_contig11939:2934..3531Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11939 2935..3531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11939.1652.1prot_Ecto-sp13_S_contig11939.1652.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11939 2935..3531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11939.1652.1

>prot_Ecto-sp13_S_contig11939.1652.1 ID=prot_Ecto-sp13_S_contig11939.1652.1|Name=mRNA_Ecto-sp13_S_contig11939.1652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=199bp
SASATAQEAERSRRAPSVCTQTTHQMERDQQQRQVSGRGLETGRLPTIPC
SSNSNPATNTLPWRERRRARQSQPLRRPSAATTGLASATAIRTAMTTIAC
VVVAGVFLAVRSPHGIRPLQRGEEAAPPTRTGSACPPPPPPPPLLLPRRA
AGDRRFRVGEAVAASGGSGPRIGGETRTASALAEELGGGGGGDDTTNTA
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mRNA from alignment at Ecto-sp13_S_contig11939:2935..3531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11939.1652.1 ID=mRNA_Ecto-sp13_S_contig11939.1652.1|Name=mRNA_Ecto-sp13_S_contig11939.1652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=597bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11939:2935..3531+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTGCGTCAGCCACAGCGCAAGAGGCAGAAAGGAGCAGGAGAGCCCCTTC
TGTCTGTACACAGACAACACATCAGATGGAGCGTGACCAACAGCAGCGGC
AGGTGTCAGGACGAGGCCTTGAAACCGGCCGGCTGCCCACGATACCATGT
TCTTCTAATTCTAACCCCGCCACCAACACCCTGCCTTGGCGTGAGCGGCG
GCGGGCACGACAATCGCAACCGCTGCGGAGGCCTTCGGCTGCTACTACCG
GCCTTGCCTCGGCGACCGCTATCAGAACAGCAATGACGACAATCGCGTGC
GTGGTAGTTGCCGGCGTCTTCCTCGCCGTCCGCTCCCCCCACGGCATCCG
ACCACTCCAGCGCGGAGAAGAAGCAGCGCCCCCGACGAGGACGGGGTCCG
CCTGCCCGCCGCCGCCGCCGCCGCCGCCACTGCTGCTGCCACGGAGAGCG
GCCGGCGATCGACGCTTCCGGGTAGGAGAAGCCGTCGCCGCAAGCGGAGG
AAGTGGCCCTCGGATAGGCGGAGAAACAAGAACGGCTTCCGCTCTCGCTG
AAGAACTGGGCGGGGGGGGCGGCGGCGACGACACAACCAACACCGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11939:2935..3531+

>mRNA_Ecto-sp13_S_contig11939.1652.1 ID=mRNA_Ecto-sp13_S_contig11939.1652.1|Name=mRNA_Ecto-sp13_S_contig11939.1652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=597bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11939:2935..3531+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTGCGTCAGCCACAGCGCAAGAGGCAGAAAGGAGCAGGAGAGCCCCTTC
TGTCTGTACACAGACAACACATCAGATGGAGCGTGACCAACAGCAGCGGC
AGGTGTCAGGACGAGGCCTTGAAACCGGCCGGCTGCCCACGATACCATGT
TCTTCTAATTCTAACCCCGCCACCAACACCCTGCCTTGGCGTGAGCGGCG
GCGGGCACGACAATCGCAACCGCTGCGGAGGCCTTCGGCTGCTACTACCG
GCCTTGCCTCGGCGACCGCTATCAGAACAGCAATGACGACAATCGCGTGC
GTGGTAGTTGCCGGCGTCTTCCTCGCCGTCCGCTCCCCCCACGGCATCCG
ACCACTCCAGCGCGGAGAAGAAGCAGCGCCCCCGACGAGGACGGGGTCCG
CCTGCCCGCCGCCGCCGCCGCCGCCGCCACTGCTGCTGCCACGGAGAGCG
GCCGGCGATCGACGCTTCCGGGTAGGAGAAGCCGTCGCCGCAAGCGGAGG
AAGTGGCCCTCGGATAGGCGGAGAAACAAGAACGGCTTCCGCTCTCGCTG
AAGAACTGGGCGGGGGGGGCGGCGGCGACGACACAACCAACACCGCG
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