mRNA_Ecto-sp13_S_contig11937.1651.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11937.1651.1
Unique NamemRNA_Ecto-sp13_S_contig11937.1651.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11937.1651.1 vs. uniprot
Match: A0A835YYD6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYD6_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.660e-16
Identity = 45/91 (49.45%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:   16 ASVLFFGSARAKDREGWEKAVAKAEEELAAATDDESRKAAEKNLKKWKKCEWMGESAEKVAKLAELVTAWAVSRRCVLGREHSFNGVTRYH 288
            A++L FGSARAK RE W  A+A A    AAA   E+R    K  +K ++  WMG+  +K+ +L+ L+TAW VS  C LGR+HS +GVTRYH
Sbjct:   86 ATILVFGSARAKSREEWAAALAAARALEAAAAAGEARXXXXKAARKIERTAWMGDMTDKIVELSRLLTAWGVSDACHLGRDHSISGVTRYH 176
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BLAST of mRNA_Ecto-sp13_S_contig11937.1651.1 vs. uniprot
Match: A0A835ZEY0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEY0_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.780e-13
Identity = 43/91 (47.25%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:   16 ASVLFFGSARAKDREGWEKAVAKAEEELAAATDDESRKAAEKNLKKWKKCEWMGESAEKVAKLAELVTAWAVSRRCVLGREHSFNGVTRYH 288
            A+VL FGSARAK +E WE AV                 AA K L+K +K  WMGE  +K+ +L+ L+T WAVS  C LG++H+ +GVTRYH
Sbjct:   64 ATVLVFGSARAKSQEDWEAAVXXXXXXXXXXXXXXXX-AATKALQKIEKTSWMGEMTDKIVELSRLLTEWAVSPECRLGKDHTISGVTRYH 153
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BLAST of mRNA_Ecto-sp13_S_contig11937.1651.1 vs. uniprot
Match: R1FLW8_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FLW8_EMIHU)

HSP 1 Score: 58.2 bits (139), Expect = 2.190e-7
Identity = 37/90 (41.11%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:   16 ASVLFFGSARAKDREGWEKAVAKAEEELAAATDDESRKA-AEKNLKKWKKCEWMGESAEKVAKLAELVTAWAVSRRCVLGREHSFNGVTR 282
            A+++FFGSAR+KDR  ++ A+AK+ + +A A D  S +A A   L++ +K EWM E  EK+ +LA+ VT W++  +  L  + S  GV+R
Sbjct:   76 ATIMFFGSARSKDRAQYDDALAKSRKAVAEAPDGSSEQALARGTLERLQKSEWMCEYMEKIRQLAQRVTEWSIKTKYSLANQVS--GVSR 163
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BLAST of mRNA_Ecto-sp13_S_contig11937.1651.1 vs. uniprot
Match: A0A7S3RRM5_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RRM5_9SPIT)

HSP 1 Score: 55.8 bits (133), Expect = 5.660e-7
Identity = 47/137 (34.31%), Postives = 67/137 (48.91%), Query Frame = 1 
Query:   16 ASVLFFGSARAKDREGWEKAVAKAEEELAAATD-DESRKAAEKNLKKWKKCEWMGESAEKVAKLAELVTAWA-------------VSRRCVLGREHSFN---GVTRYHQLRKSSMDTEPQVDLQSGPGRNQHLVVCT 375
            A+++FFGSAR+KD+E +  A AKA   +A  +   + R+ AE  L + KK EWM E  EK+ +LA+ +T+W+             VSR      +H      G T+ H L  SS D     D   G      + VCT
Sbjct:   54 ATIMFFGSARSKDKEQYADAFAKANAAIAKTSPGSDDRELAEAALDRLKKGEWMCEYMEKIRELAKRLTSWSIDTKYRLKNQISGVSRNTAARIKHKKEAAAGKTKLHYLPHSSEDYSAAEDASPG------IYVCT 184
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BLAST of mRNA_Ecto-sp13_S_contig11937.1651.1 vs. uniprot
Match: A0A7S4IS05_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4IS05_9EUKA)

HSP 1 Score: 55.8 bits (133), Expect = 1.070e-6
Identity = 41/112 (36.61%), Postives = 65/112 (58.04%), Query Frame = 1 
Query:   16 ASVLFFGSARAKDREGWEKAVAKAEEEL-AAATDDESRKAAEKNLKKWKKCEWMGESAEKVAKLAELVTAWAVSRRCVLGREHSFNGVTRYHQLRKS-SMDTEPQVDLQSGP 345
            A++ FFGSARA+DR  ++KA+A+   +L AAA + ++   AE+ +KK K+ EWM      + +LA  VTAW+++R       HS   V+   + + +  M  E  V+L S P
Sbjct:  117 ATIQFFGSARARDRHQFDKAMAETVAKLDAAAPESDAHTDAEERIKKLKQIEWMVPYMASIQELARRVTAWSMTR-------HSRQAVSGVDRTKSALRMSRENLVELGSAP 221
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BLAST of mRNA_Ecto-sp13_S_contig11937.1651.1 vs. uniprot
Match: A0A812Q2N3_9DINO (Log protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Q2N3_9DINO)

HSP 1 Score: 55.8 bits (133), Expect = 1.350e-6
Identity = 29/73 (39.73%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:   19 SVLFFGSARAKDREGWEKAVAKAEEELAAATDDESRKAAEKNLKKWKKCEWMGESAEKVAKLAELVTAWAVSR 237
            ++LF+GSARA+    W   +  AE +LA+A+D+E+R AA+  + +  KC+WM +     A L+E +T WA +R
Sbjct:   77 TILFYGSARARPPAAWAAQLEAAEADLASASDEEARAAAQACIDRLHKCKWMSDLYSATADLSERLTRWATTR 149
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11937.1651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835YYD6_9STRA2.660e-1649.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZEY0_9STRA4.780e-1347.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
R1FLW8_EMIHU2.190e-741.11Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S3RRM5_9SPIT5.660e-734.31Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S4IS05_9EUKA1.070e-636.61Hypothetical protein (Fragment) n=1 Tax=Prymnesium... [more]
A0A812Q2N3_9DINO1.350e-639.73Log protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11937contigEcto-sp13_S_contig11937:880..3087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score60.1
Seed ortholog evalue8.6e-07
Seed eggNOG ortholog2903.EOD36616
Model size377
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Possible lysine decarboxylase
EggNOG OGs2QT54@2759,COG1611@1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_000130.1
Cds size375
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462631.8944435-CDS-Ecto-sp13_S_contig11937:879..10081681462631.8944435-CDS-Ecto-sp13_S_contig11937:879..1008Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11937 880..1008 +
1681462631.9064653-CDS-Ecto-sp13_S_contig11937:1701..17641681462631.9064653-CDS-Ecto-sp13_S_contig11937:1701..1764Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11937 1702..1764 +
1681462631.917542-CDS-Ecto-sp13_S_contig11937:2363..25171681462631.917542-CDS-Ecto-sp13_S_contig11937:2363..2517Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11937 2364..2517 +
1681462631.9335227-CDS-Ecto-sp13_S_contig11937:3058..30871681462631.9335227-CDS-Ecto-sp13_S_contig11937:3058..3087Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11937 3059..3087 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11937.1651.1prot_Ecto-sp13_S_contig11937.1651.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11937 880..3087 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11937.1651.1

>prot_Ecto-sp13_S_contig11937.1651.1 ID=prot_Ecto-sp13_S_contig11937.1651.1|Name=mRNA_Ecto-sp13_S_contig11937.1651.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
MAHRTASVLFFGSARAKDREGWEKAVAKAEEELAAATDDESRKAAEKNLK
KWKKCEWMGESAEKVAKLAELVTAWAVSRRCVLGREHSFNGVTRYHQLRK
SSMDTEPQVDLQSGPGRNQHLVVCT
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mRNA from alignment at Ecto-sp13_S_contig11937:880..3087+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11937.1651.1 ID=mRNA_Ecto-sp13_S_contig11937.1651.1|Name=mRNA_Ecto-sp13_S_contig11937.1651.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2208bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11937:880..3087+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCCATCGAACAGCGTCGGTGCTCTTCTTCGGGTCTGCTCGTGCCAA
GGACCGCGAGGGGTGGGAGAAGGCTGTCGCTAAGGCGGAGGAGGAGCTGG
CGGCAGCCACAGATGATGAATCGCGCAAGGTACCGCAGTAGTAGTGCCGG
TATATTGCTTTGTATGATGATTGCAGTGATGGACAAAAATCGCCGCGGTA
TGTCGGAACCCGCGCTATTGGGGGAAGATCCCTGAATAGTAGTTTCGTAG
CAGTATTACAGGGTAGGGTGTTCTGCGAAATATCGCAACCGCGCTATTGG
GGACCGCGGTACGATATATCGGTACCTCTTCAGTAGTACTGTTGCTTGCG
TGTTTGGCGGTTTTGACCTCTGTCCAATGTTTACCTCATCTCCCGTATAT
CTACTTTCCTTTTCCCCAACCTTGCCACAAACGACAATTATAAGACTTTT
GACCATCTGAGGTTTGTACGGGAAGGGACGCTGCTGTTGTTGTTGCTGCT
GCTGCTGCTGCTGCTGTGGTTGCCGCTGCTGCTTCTACTTCTACCTTTGC
TGTCGATGGTGGTGGTGTGGTGAAGATCGCGTTTGTTGCTGTTCTTAAAG
GGTGTCGGGGTCGGCGTTCGCGGTACTTGTGCAAGACCTTCATTGAAGTC
AGGGTAAAGCATCACCGCTGCAGTGGGCAACATGACTTATCGCCATCTTG
AAGCATCACACACACAGCTGCTCTTTCCTCCATTCCAGAACATCCTTCAC
CGCTCCTCGGATCTCATTCACACCTGATTTCGTTCACATTTTGTTTCAAT
TTCGTTTTTTTTTACCTTCCAGGCGGCGGAGAAGAACCTCAAGAAGTGGA
AGAAGTGCGAGTGGATGGGCGAGTCCGCTGAGAAGGTGGGTGGTGCTGCT
GCTTTGTTCTCGATTTTATTGTTCAGTTCTGATGATGCTGGTGTGACTGT
AGGTGATGATGATGAAGTCAGTGTTGATTCTGCTGTCAAATGTGACTGAC
GTGTGGCCGCGATTAGGGGGCTGAATTCAAACCGTTTCCCCCCCCCCTCC
CTAGAAGCTTTGCCAAAAGACGTCGACGACGACGGCCCGCGAGCAACAAT
CTTTGAGAGTCTCCGCGCTGCGAAGCAAAGGTTCAACGTATGGAAGCCGG
AATCAAACCGTTAGTAGTCAGGTCAGCGCCTACTTGACTTGACTAGTCTA
ACGGCGTGATTTCGGCTTCTATAGATGCGTTTTTTCTCTTTGCATGATCT
TCCTCCGACGCTCCTTGAGGGCCCCCTTCCGCACGTGAGAACTTGCGCCG
CCAAAACACCACCCACACTTCGTTGTTGTTGCTCTGCTCTCGTCTTGTCT
TGTCTTGTCTTGTCTTCTGTTTTCTTGTATCTTGTCTCTTCTTCTCCTCT
GTTGTCTTCTCTTGTGCGTACCTACTCTCTCCTCTTATCTCCTCTTATCT
CCTCCTCTTCTCCTTCTCTTCTGTTGGTGAAAAGGTGGCTAAGCTGGCCG
AGTTAGTGACAGCGTGGGCGGTGTCCAGGCGCTGCGTACTTGGGCGGGAG
CACTCCTTCAACGGCGTCACCCGGTACCACCAGCTGCGCAAGTCTTCCAT
GGACACGGAGCCCCAGGTGGACCTGCAGAGCGGCCCAGGTACGTGCAGCC
TGTGTGAAGTTTGTGCACTGCTGTGCTACGGTCAGGCCTTCGTACCTACA
CCTCCAACCTTGTTTTTTGTGGGGTTGATCCGCGCGACCGCAAACACGAT
CACGCACAACCACTTCCCAAGCGCTGAATCCTACAATATACTTCCGATTC
TCTCCGCATGGCTAAGGCCAATCAGGGCACAACGCCTTGTGCAAAAGTGC
GCACAATGAGTGCTCTGAGAACCCTGTCCCCATCCCTCGCCAATTCCCTT
CTCGTAACCCTTCCTAACCCTGTTTCCCGCTCACAGCAGTAAAGACTGTC
GCGGTGCTTGAGATATACACACACTTGCTTTTGTTCCTCCCACAGCAAAC
AGTCAGTCTCGACCATTGAATGATCCCCCTTGTTTCTCTCCTCCTCTGCG
GGGATTTTGTTCTGTTTTGGGTATTACAGTGTTCTTATTCTGTTCTGCTT
GCCTCGCAAGGTACGGGCGCTCACCCTCCGTTTCCCATGTTCCCATGCAA
ACCGCAAAACTACCTTCGATCGAACACAGGACGTAACCAGCACTTGGTGG
TTTGCACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11937:880..3087+

>mRNA_Ecto-sp13_S_contig11937.1651.1 ID=mRNA_Ecto-sp13_S_contig11937.1651.1|Name=mRNA_Ecto-sp13_S_contig11937.1651.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11937:880..3087+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCCATCGAACAGCGTCGGTGCTCTTCTTCGGGTCTGCTCGTGCCAA
GGACCGCGAGGGGTGGGAGAAGGCTGTCGCTAAGGCGGAGGAGGAGCTGG
CGGCAGCCACAGATGATGAATCGCGCAAGGCGGCGGAGAAGAACCTCAAG
AAGTGGAAGAAGTGCGAGTGGATGGGCGAGTCCGCTGAGAAGGTGGCTAA
GCTGGCCGAGTTAGTGACAGCGTGGGCGGTGTCCAGGCGCTGCGTACTTG
GGCGGGAGCACTCCTTCAACGGCGTCACCCGGTACCACCAGCTGCGCAAG
TCTTCCATGGACACGGAGCCCCAGGTGGACCTGCAGAGCGGCCCAGGACG
TAACCAGCACTTGGTGGTTTGCACG
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