mRNA_Ecto-sp13_S_contig11916.1636.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11916.1636.1
Unique NamemRNA_Ecto-sp13_S_contig11916.1636.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11916.1636.1 vs. uniprot
Match: A0A6H5KTW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTW1_9PHAE)

HSP 1 Score: 256 bits (653), Expect = 1.490e-81
Identity = 183/199 (91.96%), Postives = 188/199 (94.47%), Query Frame = 1 
Query:    1 DQATEMLTMEDWIALENDGLELVCDPDCYENSMLDGCGAFGLDTECRAVDIDDEGGEGGXXXXGTTSSETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG--DTSSESCTDAEIAMCADISPAQEEALAMYDGGGKVIVCDPTCLGGDISHCNYFGLGQLCRGCGSCSECVPCP 591
            ++ATE+LTMEDWIALENDGLELVCDPDCYENSMLDGCGAFGLDTECR V+IDD  GEGGXXX GTTSSET  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  G  DT+S SCTDAEIAMCADISPAQEEALAMYDGGGKVIVCDPTCLGGDISHCNYFGLGQLCRGCGSCSECVPCP
Sbjct:  179 EEATEILTMEDWIALENDGLELVCDPDCYENSMLDGCGAFGLDTECRTVEIDDGEGEGGXXXGGTTSSETGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGGGDTTSGSCTDAEIAMCADISPAQEEALAMYDGGGKVIVCDPTCLGGDISHCNYFGLGQLCRGCGSCSECVPCP 377
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BLAST of mRNA_Ecto-sp13_S_contig11916.1636.1 vs. uniprot
Match: D7G4W7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4W7_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 2.220e-63
Identity = 175/240 (72.92%), Postives = 179/240 (74.58%), Query Frame = 1 
Query:    1 DQATEMLTMEDWIALENDGLELVCDPDCYENSMLDGCGAFGLDTECRAVDIDDEGGEGGXXXXGTTSSETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDTSSE-------------------------------------------SCTDAEIAMCADISPAQEEALAMYDGGGKVIVCDPTCLGGDISHCNYFGLGQLCRGCGSCSECVPCP 591
            ++ATEMLTMEDWIALENDGLELVCDPDCYENSMLDGCGAFGLD ECRAV+IDD  G   XXXX TTSSET  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                 SCT+AEIAMCADISPAQEEALAMYDGGGKVIVCDPTCLG DISHCNYFGLGQLCRGCGSCS C PCP
Sbjct:  173 EEATEMLTMEDWIALENDGLELVCDPDCYENSMLDGCGAFGLDIECRAVEIDDGEGXXXXXXXXTTSSETGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCTEAEIAMCADISPAQEEALAMYDGGGKVIVCDPTCLGEDISHCNYFGLGQLCRGCGSCSGCDPCP 412
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BLAST of mRNA_Ecto-sp13_S_contig11916.1636.1 vs. uniprot
Match: D7FTU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU6_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 1.620e-20
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:  400 DAEIAMCADISPAQEEALAMYDGGGKVIVCDPTCLGG--DISHCNYFGLGQLCRGCGSCSECVPCP 591
            D E ++C++++ AQ E+LA Y  GGK I+CDP C+ G  DI+HCNYFGLGQ+CRGCG C +C PCP
Sbjct: 1459 DDECSVCSNLTEAQMESLAAYPDGGKQIICDPRCVDGSSDIAHCNYFGLGQICRGCGDCDDCTPCP 1524
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BLAST of mRNA_Ecto-sp13_S_contig11916.1636.1 vs. uniprot
Match: A0A6H5L1V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V0_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.440e-16
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:  400 DAEIAMCADISPAQEEALAMYDGGGKVIVCDPTCLGG--DISHCNYFGLGQLCRGCGSCS 573
            D E ++C++++  Q   LA YD GGK +VCDPTCL G  D  HCNYFGLGQ+CRGCG CS
Sbjct:   12 DDECSVCSNLTDEQVAILASYDNGGKQVVCDPTCLDGVTDPLHCNYFGLGQICRGCGDCS 71
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BLAST of mRNA_Ecto-sp13_S_contig11916.1636.1 vs. uniprot
Match: A0A6H5L314_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L314_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 6.120e-16
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:  400 DAEIAMCADISPAQEEALAMYDGGGKVIVCDPTCLGG--DISHCNYFGLGQLCRGCGSCS 573
            D E ++C++++  Q   LA YD GGK +VCDPTCL G  D  HCNYFGLGQ+CRGCG CS
Sbjct:  428 DDECSVCSNLTDEQVAILASYDNGGKQVVCDPTCLDGVTDPLHCNYFGLGQICRGCGDCS 487
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BLAST of mRNA_Ecto-sp13_S_contig11916.1636.1 vs. uniprot
Match: D8LI25_ECTSI (Mucin 17-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI25_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 2.490e-13
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:  385 SESCTDAEIAMCADISPAQEEALAMYDGGGKVIVCDPTCLGG-DISHCNYFGLGQLCRGCGSCSECVPC 588
            +++ T ++ A C+++S  Q  ALA + GG K +VCD  CL G D+  C+YFGLGQ+CRGCG C  C  C
Sbjct: 1172 ADADTTSDCAACSNLSEVQMLALAAHPGGAKRVVCDSDCLDGVDVLDCDYFGLGQICRGCGDCDGCEAC 1240
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BLAST of mRNA_Ecto-sp13_S_contig11916.1636.1 vs. uniprot
Match: A0A6H5JFL8_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL8_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.690e-8
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 DQATEMLTMEDWIALENDGLELVCDPDCYENSMLDGCGAFGLDTECRAVDI 153
            ++A   +T  DW  LE++GLELVCDPDC  +  LDGC AFGL T CR + +
Sbjct:  382 ERAPLYMTPADWATLEDEGLELVCDPDCLMDEALDGCAAFGLGTACRTIPL 432
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BLAST of mRNA_Ecto-sp13_S_contig11916.1636.1 vs. uniprot
Match: D7G832_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G832_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 2.000e-8
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 DQATEMLTMEDWIALENDGLELVCDPDCYENSMLDGCGAFGLDTECRAVDI 153
            ++A+  +T  DW  LE++GLELVCDPDC  +  L+GC AFGL T CR + +
Sbjct:  198 ERASLYMTPADWATLEDEGLELVCDPDCLMDEALEGCAAFGLGTACRTIPL 248
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11916.1636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KTW1_9PHAE1.490e-8191.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4W7_ECTSI2.220e-6372.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTU6_ECTSI1.620e-2059.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1V0_9PHAE1.440e-1660.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L314_9PHAE6.120e-1660.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI25_ECTSI2.490e-1347.83Mucin 17-like protein n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JFL8_9PHAE1.690e-852.94CBM1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G832_ECTSI2.000e-850.98EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11916contigEcto-sp13_S_contig11916:3886..5247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score98.2
Seed ortholog evalue4.4e-18
Seed eggNOG ortholog2880.D7FTU6
Model size594
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.structural constituent of cuticle
EggNOG OGsKOG3544@1,KOG3544@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_000060.1
Cds size579
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462630.3652499-CDS-Ecto-sp13_S_contig11916:3885..39501681462630.3652499-CDS-Ecto-sp13_S_contig11916:3885..3950Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11916 3886..3950 -
1681462630.3754582-CDS-Ecto-sp13_S_contig11916:4331..44191681462630.3754582-CDS-Ecto-sp13_S_contig11916:4331..4419Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11916 4332..4419 -
1681462630.3848631-CDS-Ecto-sp13_S_contig11916:4806..52321681462630.3848631-CDS-Ecto-sp13_S_contig11916:4806..5232Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11916 4807..5232 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462630.3929772-UTR-Ecto-sp13_S_contig11916:5232..52471681462630.3929772-UTR-Ecto-sp13_S_contig11916:5232..5247Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11916 5233..5247 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11916.1636.1prot_Ecto-sp13_S_contig11916.1636.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11916 3886..5232 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11916.1636.1

>prot_Ecto-sp13_S_contig11916.1636.1 ID=prot_Ecto-sp13_S_contig11916.1636.1|Name=mRNA_Ecto-sp13_S_contig11916.1636.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=193bp
MLTMEDWIALENDGLELVCDPDCYENSMLDGCGAFGLDTECRAVDIDDEG
GEGGGEGGGTTSSETGAGGGEGGGTTSSETGAGGGEGGGTTSSETGAGGG
EGGGVTSSQTGEGEGEGGGGDTSSESCTDAEIAMCADISPAQEEALAMYD
GGGKVIVCDPTCLGGDISHCNYFGLGQLCRGCGSCSECVPCP*
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mRNA from alignment at Ecto-sp13_S_contig11916:3886..5247-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11916.1636.1 ID=mRNA_Ecto-sp13_S_contig11916.1636.1|Name=mRNA_Ecto-sp13_S_contig11916.1636.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1362bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11916:3886..5247- (Ectocarpus species13 EcNAP12_S_4_19m)
GACCAGGCCACAGAGATGCTCACCATGGAGGACTGGATCGCTCTCGAGAA
CGATGGGCTGGAGCTAGTCTGTGACCCGGACTGCTACGAGAACTCCATGC
TCGACGGCTGTGGGGCCTTCGGTCTCGACACCGAGTGCCGTGCTGTCGAC
ATCGACGATGAAGGGGGTGAGGGTGGGGGCGAAGGAGGAGGAACCACATC
CTCTGAAACCGGAGCGGGCGGGGGAGAGGGAGGAGGAACCACGTCCTCTG
AGACCGGAGCGGGCGGGGGAGAGGGAGGAGGAACCACGTCCTCTGAGACC
GGAGCGGGCGGGGGAGAGGGAGGAGGGGTCACGTCCTCTCAGACGGGCGA
GGGGGAAGGAGAGGGAGGCGGAGGAGACACTTCCTCCGAAAGCTGCACTG
ACGCGGAGATCGCCATGTGTGCCGACATCTCCCCTGCACAGGTGTGTTGT
CGCGCGACTCTCTCCGGAACGTGGTTGGTTTCTTTTGTAGTTGTCCTGGA
CAAGCGCTCGTGCACTGCTGTGATATAGTGCGTGATCGGTTTTGCATTGC
TTCCGTGCCCAGCACCTTGCTAATTACCATGTGCGCCCGACCACCTCTCC
CCTGCACTATTGGCGCGAGCGCCGCGATCTACAGAGGTGCATCCCATGCC
CGTTGTTGCCTTCGTATACAAAGTCAAGCCCATGCTGTTCCTGACGCACT
TTACTGTCGTAAGTAGTGGAGTAGGAGTACATCCAAGCCTGCCTGCCGTA
GCTCTGTTGTTGTCGCCTGTCTTCTTCTCACGCCTCGCTTCGTCACGTGC
TTCTCTCGTCTGTAAACTCTCCGTACAGGAGGAGGCACTCGCCATGTACG
ACGGCGGCGGAAAGGTGATAGTGTGCGACCCCACCTGCCTCGGCGGCGAC
ATTTCTCACTGCAACTGTGAGTATTGGTATCGCATGACGGCGTTTCGCTG
CCTAATGCGATGCATATCTTCGAAGTGTGTCGTCGCCGTGCCGTTGCTGC
TGTGACTTGTGCGGGGGAAGCTGTTATTATCGTTTTGTCTGCGCCCGGTC
TTGATTTCATCGCAGCAGTGTACGTGCAAAGATTACATGGCAGCCGATAA
AGCATTCCACAAACTGCAGCCCTTGAGAAAGTCCGGTGTAACCCTCCCGA
AAAACCCTGTCCCGATCCATTCGTTCACCAACCCTATTTTTTTTTGTTTT
CATGCTCTTGTCCGTGCATACACATCTCTTACTTCGCGCCTGTCCGCTCC
ACCCACGTATTTATGTATGCCGAATCACTTGCTATCGTCATGCGCAGACT
TTGGCCTCGGACAGCTCTGCCGTGGCTGTGGCTCTTGCTCCGAGTGCGTG
CCTTGCCCTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11916:3886..5247-

>mRNA_Ecto-sp13_S_contig11916.1636.1 ID=mRNA_Ecto-sp13_S_contig11916.1636.1|Name=mRNA_Ecto-sp13_S_contig11916.1636.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=579bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11916:3886..5247- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCACCATGGAGGACTGGATCGCTCTCGAGAACGATGGGCTGGAGCT
AGTCTGTGACCCGGACTGCTACGAGAACTCCATGCTCGACGGCTGTGGGG
CCTTCGGTCTCGACACCGAGTGCCGTGCTGTCGACATCGACGATGAAGGG
GGTGAGGGTGGGGGCGAAGGAGGAGGAACCACATCCTCTGAAACCGGAGC
GGGCGGGGGAGAGGGAGGAGGAACCACGTCCTCTGAGACCGGAGCGGGCG
GGGGAGAGGGAGGAGGAACCACGTCCTCTGAGACCGGAGCGGGCGGGGGA
GAGGGAGGAGGGGTCACGTCCTCTCAGACGGGCGAGGGGGAAGGAGAGGG
AGGCGGAGGAGACACTTCCTCCGAAAGCTGCACTGACGCGGAGATCGCCA
TGTGTGCCGACATCTCCCCTGCACAGGAGGAGGCACTCGCCATGTACGAC
GGCGGCGGAAAGGTGATAGTGTGCGACCCCACCTGCCTCGGCGGCGACAT
TTCTCACTGCAACTACTTTGGCCTCGGACAGCTCTGCCGTGGCTGTGGCT
CTTGCTCCGAGTGCGTGCCTTGCCCTTAA
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