mRNA_Ecto-sp13_S_contig11908.1628.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11908.1628.1 vs. uniprot
Match: A0A6H5K420_9PHAE (DUF1681 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K420_9PHAE) HSP 1 Score: 244 bits (623), Expect = 5.010e-75 Identity = 165/193 (85.49%), Postives = 167/193 (86.53%), Query Frame = 1
Query: 1 LFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQD--------TKLKEDGQGGGDSGGDGGKAAATTPKVDLSLKQGEKIKISIGGGSKASSRPRRAGKXXXXXXXXXX-TLAPPPGDTARKTXXXXIGXXXXXXXXXRRARATATPSSPAAPAMPSGGGPSYSQAPSGIGSS 552
LFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQ+ KLKE GQGG GKAAA TPKVDLSLKQGEKIKISIGGGSKASSRPR XXXXXXXXXX TLAPPPGDTARKTXXXX XXXXXXXXXRRARATA PSSPAAPAMPSGGGPSYSQAPSG+GSS
Sbjct: 69 LFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDIERSAKLKEGGQGGXXXXXXXGKAAAATPKVDLSLKQGEKIKISIGGGSKASSRPRXXXXXXXXXXXXXXLTLAPPPGDTARKTXXXXXXXXXXXXXXXRRARATAKPSSPAAPAMPSGGGPSYSQAPSGVGSS 261
BLAST of mRNA_Ecto-sp13_S_contig11908.1628.1 vs. uniprot
Match: D8LLJ9_ECTSI (DUF1681 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ9_ECTSI) HSP 1 Score: 186 bits (471), Expect = 2.380e-54 Identity = 98/108 (90.74%), Postives = 99/108 (91.67%), Query Frame = 1
Query: 1 LFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQD--------TKLKEDGQGGGDSGGDGGKAAATTPKVDLSLKQGEKIKISIGGGS 300
LFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQ+ TKLKEDGQGGGDSGGDGGKAAA TPKVDLSLKQGEKIKISIGGGS
Sbjct: 69 LFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQEFKKDIERSTKLKEDGQGGGDSGGDGGKAAAATPKVDLSLKQGEKIKISIGGGS 176
BLAST of mRNA_Ecto-sp13_S_contig11908.1628.1 vs. uniprot
Match: A0A4D9CRU7_9STRA (DUF1681 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CRU7_9STRA) HSP 1 Score: 104 bits (259), Expect = 1.150e-22 Identity = 62/120 (51.67%), Postives = 77/120 (64.17%), Query Frame = 1
Query: 1 LFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQD---TKLKED------GQGGGDSGGDGGKAAATTPKVDLSLKQGEKIKISIGGGSKASSRPRRAGK 333
LFAM + +G+VER DSSRYFV+K+QNA G+HAF+G+AFD+R QAFDFNVA+Q+ K +E+ G GG DS A PK DLSLK+GEKI I + RPR GK
Sbjct: 69 LFAMSPIKEGSVERCVDSSRYFVLKVQNAAGKHAFIGVAFDEREQAFDFNVAIQEYEKDKEREERLRTGVGAGGVDS------MEAGIPKRDLSLKEGEKISIKLPTRQGGERRPRGIGK 182
BLAST of mRNA_Ecto-sp13_S_contig11908.1628.1 vs. uniprot
Match: A0A8J9SYL8_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SYL8_PHATR) HSP 1 Score: 99.8 bits (247), Expect = 1.210e-22 Identity = 47/96 (48.96%), Postives = 69/96 (71.88%), Query Frame = 1
Query: 1 LFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQDTKLKEDGQGGGDSGGDGGKAAATTPKVDLSLKQGEKIKISI 288
+FA+C V +GAV+R DSSRYFV++++NA GRH F+GLAF++RN AFDFN +L+D++ +++ + + G D G P D S+K GEKI IS+
Sbjct: 65 IFAVCPVKEGAVDRCVDSSRYFVLRVENAAGRHMFIGLAFNERNDAFDFNTSLEDSRREKEAEANPEEGTDSG------PPKDYSMKDGEKIHISV 154
BLAST of mRNA_Ecto-sp13_S_contig11908.1628.1 vs. uniprot
Match: A0A482RQS2_9ARCH (DUF1681 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RQS2_9ARCH) HSP 1 Score: 97.4 bits (241), Expect = 1.060e-21 Identity = 52/97 (53.61%), Postives = 69/97 (71.13%), Query Frame = 1
Query: 1 LFAMCKVADGA-VERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQDTKLKEDGQGGGDSGGDGGKAAATTPKVDLSLKQGEKIKISI 288
+FA+C+V D + VER DS RYFV+KI NAQGRHAF+G+AF++R+ AFDFNVAL + K +++ + SG A+T P D SLK GEKIKI +
Sbjct: 64 VFAICQVTDDSCVERTLDSGRYFVLKISNAQGRHAFIGIAFNERSDAFDFNVALSNFKSEQEREQKASSGSF---TASTEPSQDFSLKSGEKIKIKL 157
BLAST of mRNA_Ecto-sp13_S_contig11908.1628.1 vs. uniprot
Match: A0A1Z5JP51_FISSO (DUF1681 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JP51_FISSO) HSP 1 Score: 96.3 bits (238), Expect = 9.430e-21 Identity = 58/134 (43.28%), Postives = 81/134 (60.45%), Query Frame = 1
Query: 1 LFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQDTKLKEDGQGGGDSGGDGGKAAATTPKVDLSLKQGEKIKISIGGGSKASSRPRRAGKXXXXXXXXXXTLAPPPGDTARKT 402
+FA+C V+DGAV+R DSSRYFV+K++NA G+H FVG+AF++RN AFDFN AL+D + +++ + + K PK D S+K+GEKI IS+G +S R K L P DT R+T
Sbjct: 86 IFAVCPVSDGAVDRCVDSSRYFVLKVENADGKHLFVGMAFNERNDAFDFNTALEDARREKEVEQ------NMAKLDIGEPK-DYSIKEGEKIHISVG----KTSVTRLTKKKAETGTKSGGFLKPSSKDTPRRT 208
BLAST of mRNA_Ecto-sp13_S_contig11908.1628.1 vs. uniprot
Match: A0A835YRJ0_9STRA (NECAP endocytosis associated 2 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRJ0_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 1.570e-20 Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 1
Query: 1 LFAMCKVADGAVER------VPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQDTKLKEDGQGGGDSGGDGGKAAATTPKVDLSLKQGEKIKISIGG 294
+FAM +V +G+V++ V DSSRYFV+K+++ GRHAF+GLAF+DRN +FDFNVALQ+ + + + GG G P +D +LK+GEKIK++IGG
Sbjct: 26 IFAMSRVKEGSVDKASARALVKDSSRYFVLKVESPDGRHAFIGLAFNDRNASFDFNVALQEFQKDVAREAAMEKGG--GDLTPKGPAMDFTLKEGEKIKMNIGG 127
BLAST of mRNA_Ecto-sp13_S_contig11908.1628.1 vs. uniprot
Match: A0A7S2UCH3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UCH3_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 2.730e-20 Identity = 48/96 (50.00%), Postives = 66/96 (68.75%), Query Frame = 1
Query: 1 LFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQDTKLKEDGQGGGDSGGDGGKAAATTPKVDLSLKQGEKIKISI 288
+FA+C V +GAV+R DSSRYFV++I+NA GRH F+G+AF++RN AFDFN AL+D++ + + + A T P D SLK GEKI +SI
Sbjct: 89 IFAVCPVKEGAVDRCIDSSRYFVLRIENANGRHGFIGIAFNERNDAFDFNTALEDSRREREAESNP-------LPAYTGPSKDYSLKAGEKIHVSI 177
BLAST of mRNA_Ecto-sp13_S_contig11908.1628.1 vs. uniprot
Match: A0A7S2YCS3_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YCS3_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 1.510e-18 Identity = 48/111 (43.24%), Postives = 73/111 (65.77%), Query Frame = 1
Query: 1 LFAMCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQDTKLKEDGQGGGDSGGDGGKAAATTPKVDL------SLKQGEKIKISI--GGGSKAS 309
+FA+C V DGAV+R DSSRYFV++++NA GRH ++G+AF++RN AFDFN +L+D++ + + AAA +VD+ S+K+G+KI I++ GG K S
Sbjct: 86 IFAVCPVKDGAVDRCVDSSRYFVLRVENANGRHIYIGMAFNERNDAFDFNTSLEDSRRERE-------------AAANPVQVDVGPSKDYSIKEGQKIHINVKVGGTEKKS 183
BLAST of mRNA_Ecto-sp13_S_contig11908.1628.1 vs. uniprot
Match: A0A8J6CD41_DIALT (DUF1681 domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CD41_DIALT) HSP 1 Score: 92.0 bits (227), Expect = 1.530e-18 Identity = 60/137 (43.80%), Postives = 79/137 (57.66%), Query Frame = 1
Query: 1 LFAMCKVADG----AVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALQD--TKLKEDGQGGG---DSGGDGGKA-AATTPKVDLSLKQGEKIKISIGGGSKASSRPRRAGKXXXXXXXXXXTLAPPP 381
L+A C + + +VE V DSSRYFVI++ + +GRHAF+GL F +R AFDFNVALQD + + D GG D+ GD G A AA P VD SLK+GE + +SIGG + + + A L PPP
Sbjct: 67 LYAQCPLDNDKPEVSVEPVTDSSRYFVIRVDDGRGRHAFLGLGFRERADAFDFNVALQDHVRQARGDANGGAYGIDAHGDTGAAGAAAQPLVDFSLKEGETLTVSIGGRTGGARKREPAAAGAATAAGMLGPLPPPP 203 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11908.1628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11908.1628.1 >prot_Ecto-sp13_S_contig11908.1628.1 ID=prot_Ecto-sp13_S_contig11908.1628.1|Name=mRNA_Ecto-sp13_S_contig11908.1628.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=239bp MCKVADGAVERVPDSSRYFVIKIQNAQGRHAFVGLAFDDRNQAFDFNVALback to top mRNA from alignment at Ecto-sp13_S_contig11908:2415..4600- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11908.1628.1 ID=mRNA_Ecto-sp13_S_contig11908.1628.1|Name=mRNA_Ecto-sp13_S_contig11908.1628.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11908:2415..4600- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11908:2415..4600- >mRNA_Ecto-sp13_S_contig11908.1628.1 ID=mRNA_Ecto-sp13_S_contig11908.1628.1|Name=mRNA_Ecto-sp13_S_contig11908.1628.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=717bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11908:2415..4600- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |