mRNA_Ecto-sp13_S_contig11906.1626.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11906.1626.1
Unique NamemRNA_Ecto-sp13_S_contig11906.1626.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11906.1626.1 vs. uniprot
Match: A0A6H5JM89_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM89_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 1.770e-87
Identity = 144/174 (82.76%), Postives = 151/174 (86.78%), Query Frame = 2 
Query:  116 MPATGSLLLDKNPLLTAASEFFSSGIGDGLTMKEVVRQLQTVALCYTAMGVKRNAGEIDSKKREALLLKAYKDDVVPGFLKWLSEEGDCTTPPWLTMDMMGRVAVHVGTNGTGTSVRKSKGKEKQQQPKD---EEPKLYKDGKKIWARYLDAFRDIRKDANPVYDKTIGDQPGG 628
            MPAT SLLLDKNPLLTAA E FSSGIGDGLTMKEVVRQLQTVALCYTAMGVKRNAGEIDSKKREALLLKAYKDDVVPGFLKWLSEEGDCTTPPWLTM+MMGRVAVH   +    +    +  E++    +   EEPKLYKDGKKIWARYLDAFRDIRKDANPVYDKTIGDQPGG
Sbjct:    1 MPATESLLLDKNPLLTAALELFSSGIGDGLTMKEVVRQLQTVALCYTAMGVKRNAGEIDSKKREALLLKAYKDDVVPGFLKWLSEEGDCTTPPWLTMEMMGRVAVHTCRHQWHRNAGAEEQGERETAATESLYEEPKLYKDGKKIWARYLDAFRDIRKDANPVYDKTIGDQPGG 174
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BLAST of mRNA_Ecto-sp13_S_contig11906.1626.1 vs. uniprot
Match: A0A6H5JVP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP2_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 3.350e-65
Identity = 102/106 (96.23%), Postives = 103/106 (97.17%), Query Frame = 2 
Query:  116 MPATGSLLLDKNPLLTAASEFFSSGIGDGLTMKEVVRQLQTVALCYTAMGVKRNAGEIDSKKREALLLKAYKDDVVPGFLKWLSEEGDCTTPPWLTMDMMGRVAVH 433
            MPAT SLLLDKNPLLTAA E FSSGIGDGLTMKEVVRQLQTVALCYTAMGVKRNAGEIDSKKREALLLKAYKDDVVPGFLKWLSEEGDCTTPPWLTM+MMGRVAVH
Sbjct:    1 MPATESLLLDKNPLLTAALELFSSGIGDGLTMKEVVRQLQTVALCYTAMGVKRNAGEIDSKKREALLLKAYKDDVVPGFLKWLSEEGDCTTPPWLTMEMMGRVAVH 106
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BLAST of mRNA_Ecto-sp13_S_contig11906.1626.1 vs. uniprot
Match: A0A6H5JUY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY9_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.060e-18
Identity = 47/139 (33.81%), Postives = 71/139 (51.08%), Query Frame = 2 
Query:  194 GDGLTMKEVVRQLQTVALCYTAMGVKRNAGEIDSKKREALLLKAYKDDVVPGFLKWLSEEGDCTTPPWLTMDMMGRVAVHVGTNGTGTSVRKSKGKEKQQQPKDEEPKLYKDGKKIWARYLDAFRDIRKDANPVYDKTI 610
            G GL+  ++++ LQ V + Y  + VKRNAG + ++ +     K YKD  VPGF KWL E G      WLT ++MGR ++    NG                     P L+ DGKK+W R+    R+++K  N V+D+ +
Sbjct:   30 GKGLSQIKLLKHLQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTFEVMGRTSL----NGA--------------------PVLFTDGKKLWKRFDKVMREMKKTYNKVWDRCV 144
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BLAST of mRNA_Ecto-sp13_S_contig11906.1626.1 vs. uniprot
Match: D7FPI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI6_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 5.090e-17
Identity = 54/168 (32.14%), Postives = 80/168 (47.62%), Query Frame = 2 
Query:  131 SLLLDKNPLLTAASEFFSSGIGDGLTMKEVVRQLQTVALCYTAMGVKRNAGEIDSKKREALLLKAYKDDVVPGFLKWLSEEGDCT---TPPWLTMDMMGRVAVHVGTNGTGTSVRKSKGKEKQQQPKDEEPKLYKDGKKIWARYLDAFRDIRKDANPVYDKTIGDQPG 625
            SL L+ N                GLT  ++++ LQ V + Y  + VKRNAG + ++ + A   K YKD  V GF KWL E  +     + PWLT ++MGR      T+ +G +V                  L+  GKK+W R+ +  R ++K  NPV+D  +  QPG
Sbjct:   11 SLPLEFNSYAETVISMLRDRRSSGLTDAKLLKHLQNVCIVYACLTVKRNAGIVSTQAKHAAAAKGYKDIAVLGFFKWLKENLEADQYFSQPWLTFEVMGR------TSMSGDAV------------------LFTHGKKLWKRFDNIMRALKKFYNPVWDSFVEGQPG 154
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BLAST of mRNA_Ecto-sp13_S_contig11906.1626.1 vs. uniprot
Match: A0A6H5KDP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDP2_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 5.850e-14
Identity = 34/85 (40.00%), Postives = 50/85 (58.82%), Query Frame = 2 
Query:  194 GDGLTMKEVVRQLQTVALCYTAMGVKRNAGEIDSKKREALLLKAYKDDVVPGFLKWLSEEGDCTTPPWLTMDMMGRVAVHVGTNG 448
            G GL+  ++++ LQ V + Y  + VKRNAG + ++ +     K YKD  VPGF KWL E G      WLT ++MGR +++ G  G
Sbjct:   30 GKGLSQIKLLKHLQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTFEVMGRTSLNGGQTG 114
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BLAST of mRNA_Ecto-sp13_S_contig11906.1626.1 vs. uniprot
Match: A0A6H5JZP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZP4_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 4.120e-13
Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = 2 
Query:  194 GDGLTMKEVVRQLQTVALCYTAMGVKRNAGEIDSKKREALLLKAYKDDVVPGFLKWLSEEGDCTTPPWLTMDMMGRVAVHVG--TNGTGTSVR 466
            G GL+  ++++ LQ V + Y  + VKRNAG + ++ +     K YKD  VPGF KWL E G      WLT ++MGR +++ G  TN +  +VR
Sbjct:   30 GKGLSQIKLLKHLQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTFEVMGRTSLNGGKKTNASRHTVR 122
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BLAST of mRNA_Ecto-sp13_S_contig11906.1626.1 vs. uniprot
Match: A0A6H5KFI6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI6_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.370e-9
Identity = 29/69 (42.03%), Postives = 40/69 (57.97%), Query Frame = 2 
Query:  233 QTVALCYTAMGVKRNAGEIDSKKREALLLKAYKDDVVPGFLKWLSEEGDCTTPPWLTMDMMGRVAVHVG 439
            Q V + Y  + VKRNAG + ++ +     K YKD  VPGF KWL E G      WLT ++MGR +++ G
Sbjct:   91 QNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTFEVMGRTSLNGG 159
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11906.1626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JM89_9PHAE1.770e-8782.76Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVP2_9PHAE3.350e-6596.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUY9_9PHAE1.060e-1833.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPI6_ECTSI5.090e-1732.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDP2_9PHAE5.850e-1440.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZP4_9PHAE4.120e-1339.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFI6_9PHAE1.370e-942.03Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11906contigEcto-sp13_S_contig11906:2017..3585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size630
Hectar predicted targeting categoryother localisation
Exons3
Cds size513
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462629.656596-UTR-Ecto-sp13_S_contig11906:2016..21311681462629.656596-UTR-Ecto-sp13_S_contig11906:2016..2131Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11906 2017..2131 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462629.6654143-CDS-Ecto-sp13_S_contig11906:2131..25191681462629.6654143-CDS-Ecto-sp13_S_contig11906:2131..2519Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11906 2132..2519 +
1681462629.6754131-CDS-Ecto-sp13_S_contig11906:3021..31211681462629.6754131-CDS-Ecto-sp13_S_contig11906:3021..3121Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11906 3022..3121 +
1681462629.6858861-CDS-Ecto-sp13_S_contig11906:3560..35851681462629.6858861-CDS-Ecto-sp13_S_contig11906:3560..3585Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11906 3561..3585 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11906.1626.1prot_Ecto-sp13_S_contig11906.1626.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11906 2132..3585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11906.1626.1

>prot_Ecto-sp13_S_contig11906.1626.1 ID=prot_Ecto-sp13_S_contig11906.1626.1|Name=mRNA_Ecto-sp13_S_contig11906.1626.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=171bp
MPATGSLLLDKNPLLTAASEFFSSGIGDGLTMKEVVRQLQTVALCYTAMG
VKRNAGEIDSKKREALLLKAYKDDVVPGFLKWLSEEGDCTTPPWLTMDMM
GRVAVHVGTNGTGTSVRKSKGKEKQQQPKDEEPKLYKDGKKIWARYLDAF
RDIRKDANPVYDKTIGDQPGG
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mRNA from alignment at Ecto-sp13_S_contig11906:2017..3585+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11906.1626.1 ID=mRNA_Ecto-sp13_S_contig11906.1626.1|Name=mRNA_Ecto-sp13_S_contig11906.1626.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1569bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11906:2017..3585+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTCAAACGCGTGCACTGCTGTTGTGCCGCACGGGCGCGGGAATTTGAAC
ACACGCGGGCGGAACAGACGTAGCTCACAGATTCCCAGCACGCCGGTGTA
CAGACCTCCCACGCCATGCCGGCTACGGGATCTCTGCTGCTAGACAAGAA
CCCCCTGTTGACGGCGGCTTCGGAGTTTTTTAGTTCCGGAATCGGCGATG
GATTGACGATGAAGGAAGTTGTCAGGCAGCTGCAGACGGTCGCTCTCTGC
TATACCGCGATGGGAGTCAAGAGGAACGCAGGAGAGATAGACAGCAAGAA
GAGAGAGGCGCTGCTACTCAAGGCATACAAGGACGACGTCGTGCCTGGCT
TTCTGAAATGGTTGTCGGAGGAGGGTGATTGTACAACCCCGCCCTGGCTG
ACGATGGATATGATGGGCCGGGTTGCTGTACATGTAGGCACCAATGGCAC
AGGAACGTCGGTGCGGAAGAGCAAGGGGAAAGAGAAACAGCAGCAACCGA
AAGGTAAGCATCAAGGTACCAAGGGCGCTGGTTTCAACTGCAGAGTGCTA
ATCGTAGAGAACTTTACCCTGAGTGTAACGCGCGACATTCGCGAGATCAT
ACCGTCGTTAGCTGTACGACCATCATCTGCTGCCATTTAACTGTAGGTTT
ACGTCACGAACGCCCCACCATCTGCTGCCACTTTGTTACAAGGAACCAAC
ACCGTGAAACCAACAGCCGTCCATGCCGCTGATGTACTCTTGCAGTCTAC
TGTGTGCTGAGTGAACTGTCCTGTTAGGGTAGATTGAGCCCGAGGTTGCT
CATTCGCATCGGCGATTGTTCGTACTTCCTCCGCGTGGTGCAAGGTAGAA
GTACAAGGGTTCAGCAGTGTAGTATATGTTGATCATTCAGCTGGGCAACG
ATTTGCTGAGTTGCCCGAGGTACAACATGTGACACTCAGCCATACGAGCA
GTAGGATTCCTTTCTCAGCATTGCTGTTCGCACCGTTGCCCCACGCATTT
GCCAGATGAAGAACCAAAGCTGTACAAGGACGGGAAGAAGATCTGGGCAA
GGTACCTAGATGCCTTCCGCGACATCAGGAAGGACGCCAACCCCGTGTAC
GACAAGTAAGTTGCTCGGGTCTGTTTTGAACAATATTTGTGTGTGCACAT
ACTATCGGTAGTTGAAGGTTTGTGTTTCATTATTTTCACCGCGATTGTGT
GTAGATATGTACACTGCTACTCTTCCGCCGGCGTGAACACAGCAGAGCTC
AGGCGTGCGGCAGACTGTCTGCGTCGAACGATCCAGTTTTGTTGTATGCA
CATGCCCTTTTGTGCCGTCAGATCGACTCCATCCTTTTTGATGAACCCCC
TCCCAAGGCCAACTCGAAGCAGAGTATTAAATGTATCAATGGCGTGCTGC
CTTGGCGTGGATGCGCGGATCTCTATCTTACAGATGGTGGGGTAAGAAGT
TGGCGACCATGACCATTCTTTTTATGTCCGGTGTCGTGTTCTGAAGTTCG
TCCATGGGTTCCCGTCGGTTCGCTGATTTTCTTTCTTCGCCCAGAACCAT
CGGGGACCAACCGGGCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11906:2017..3585+

>mRNA_Ecto-sp13_S_contig11906.1626.1 ID=mRNA_Ecto-sp13_S_contig11906.1626.1|Name=mRNA_Ecto-sp13_S_contig11906.1626.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=513bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11906:2017..3585+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGCTACGGGATCTCTGCTGCTAGACAAGAACCCCCTGTTGACGGC
GGCTTCGGAGTTTTTTAGTTCCGGAATCGGCGATGGATTGACGATGAAGG
AAGTTGTCAGGCAGCTGCAGACGGTCGCTCTCTGCTATACCGCGATGGGA
GTCAAGAGGAACGCAGGAGAGATAGACAGCAAGAAGAGAGAGGCGCTGCT
ACTCAAGGCATACAAGGACGACGTCGTGCCTGGCTTTCTGAAATGGTTGT
CGGAGGAGGGTGATTGTACAACCCCGCCCTGGCTGACGATGGATATGATG
GGCCGGGTTGCTGTACATGTAGGCACCAATGGCACAGGAACGTCGGTGCG
GAAGAGCAAGGGGAAAGAGAAACAGCAGCAACCGAAAGATGAAGAACCAA
AGCTGTACAAGGACGGGAAGAAGATCTGGGCAAGGTACCTAGATGCCTTC
CGCGACATCAGGAAGGACGCCAACCCCGTGTACGACAAAACCATCGGGGA
CCAACCGGGCGGG
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