mRNA_Ecto-sp13_S_contig11901.1622.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11901.1622.1
Unique NamemRNA_Ecto-sp13_S_contig11901.1622.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11901.1622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11901contigEcto-sp13_S_contig11901:2626..4751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size281
Hectar predicted targeting categoryother localisation
Exons2
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462629.3265107-CDS-Ecto-sp13_S_contig11901:2625..28311681462629.3265107-CDS-Ecto-sp13_S_contig11901:2625..2831Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11901 2626..2831 -
1681462629.3388567-CDS-Ecto-sp13_S_contig11901:4678..47511681462629.3388567-CDS-Ecto-sp13_S_contig11901:4678..4751Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11901 4679..4751 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11901.1622.1prot_Ecto-sp13_S_contig11901.1622.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11901 2626..4751 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11901.1622.1

>prot_Ecto-sp13_S_contig11901.1622.1 ID=prot_Ecto-sp13_S_contig11901.1622.1|Name=mRNA_Ecto-sp13_S_contig11901.1622.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=93bp
CFRGRGEGESEAGIRRAQPIPGCEVLTCVRRNSSMVRLIVRLEQYSVRYQ
RCLWVSVEQHCKNCKTSTDQNEVPARTKGTLTVHERITLSLR*
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mRNA from alignment at Ecto-sp13_S_contig11901:2626..4751-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11901.1622.1 ID=mRNA_Ecto-sp13_S_contig11901.1622.1|Name=mRNA_Ecto-sp13_S_contig11901.1622.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11901:2626..4751- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCTTCCGCGGGCGGGGTGAAGGGGAGAGCGAGGCTGGAATTCGACGCGC
ACAGCCAATTCCCGGTTGTGAAGGTAGCCTTCGATTGATGAAACTGACCG
TGGGGTTGGCTGTGTGTGTAATTAATTAGGATCATCACGATTGGATCGGG
GTTACGATTTTTTCTGTATCATCTCGTGGTTCGATCATACCGTGTTGCTT
CGATTTCGTCACACCGAAAGGTTCAGTCACAACGAAAGGTTCATTTCTTT
TTCTTGTGGGCTTTGTTTGCAGGAAATTTTGCGGTTGATTTCAATCCTAC
TGAGCTCACACTTGTCCGGTTGGTGCTCTCTCCCCAAACCACGTGTGTGT
GTGAGGTAGGGGGTGATCATGTACCTGTCGGGTTTATCGAACACGGGTTC
TGAGTGCTGTGATTTTAATGAAGGTTGTTGGTGGAGTAACTGCAAAGCAG
ATGGGCGTACCAGACTTGAATTTACGTCTTGATCGTGATCCCTTAGGGAT
CGCTGCGCCACGCCTCCCGTGCACTAGTCAAGTTATCTCGTTCTAGTGGA
CTACCGTTGAGCTTTCGTGTGCCATGTGTTCGGAGGCGATAGATACTATT
ACCTAGCTCGGGGGATTTCCGGCGTTTCCCGCCGGCATGATTGCCGTGGA
ATTTTCCAAGAAATTTCGTCACATGCCTCTGGGGCGCGCGTACAGCACTT
CGAAGTGCCGCCTGCCGGTGCCCTGGCCTCCATTGCGACGAGGCCGCCTT
CGCAGTGGAACTCCTTCCACGCGAGGCGGACCCCCCTCGGGGTGCGTGGT
GTTAACAACCGCGCGCCTCCCCCCCCCCCCCTGTTTGAGGCCTTTCTCTT
TCTCTGTTGGGAACTGTCTGTGTGTGCTTGTCTTTTGCGTGTTTGGATCC
ATCCGCCGTGTGATTCCGTGGTTACTTCCATTTTCTACCAGCACTGATTT
TGCCTGGGTTGTGAGGCTCTGCGCCGCGCTTGGTTCCACGGATCCCGACT
GCTCATTTCATTGTTTTTTGCAAGGTTACGTGCTTGTCTTGTCTTGTCTT
TTTGTTTTATTTTCCTTTTCGAGGTTCCTTTTTTTTCTTTTACTCCAAAG
CGTTGTCTTCGTATGCGTTTTCTTCTCTTGGATTACTGTAATGTCTTGTC
TTGTACATAATACGCATAGAGCGAAAGAAAGCGCCCCCCACCTTCACCCC
CTCCCGGGCCGGCGTAAACCCGGTATATCGCTCCGTCCCGGTATTGTACG
GATGCAAGGTCCATGATCTGACGACTTCGTCATGCATTCACATGAGTTTA
CCCCCACCCCCACCCACCCAAGTCCTGCCTTTTTGAGTCGGAGATCTCGG
AGATCTCAGGTACGGGGTCACATGGAAGTGAGGGTGGCTTGCGAGTCTTG
TCTTCCAACATTTGTTCGAGAGGGGTTTCATCACCGTCTTGTCTGACTCT
AACCGCAAGTGCACGTTGGCTGGCCTGGGTAGGAAACGCCACGTTTTTGA
TAGCAGTGATGGGTCGGAAATCAAGGAGATCTCATGGACGAGAGAGTTGA
ATTCACGACCGGACCTTTTGCGATTGTATCGCCTGAATTACTACCACCGC
GACCGGCGGGCGCCGTTTCACGTGTGGAGCTGAGCCGCTCGGTGCTGTGT
GGCGCTTGAGAGAGGGAAGATATGTTCGTTATCGTCTCCGTGTTTGCTTT
CAATCTCTCACCCGCCGACAGTAAAAAACATGTTCGAGGGCTGCAAAATT
AGTTGGGTGGGAAAATGTTGTGATCTATCTTCGTGTTGCATCTCGACAGC
GCCAAGTTATGTTGGTTGTCCGTGGCGTTCCCTCTGGCCTGGCCTCACGG
CCCTGTCACAGCGATGCCCTATCCCCCCCCCCCCTCTGCGGTGCCCCGTC
GTCTCGCCCATTTCCGGTAGTTTTAACATGCGTCCGAAGAAATTCCTCCA
TGGTGCGGTTAATCGTCCGGCTAGAGCAGTACAGCGTCAGGTACCAGCGT
TGTTTGTGGGTGTCTGTCGAACAACATTGCAAGAACTGCAAAACGTCCAC
GGACCAAAACGAAGTCCCAGCTCGGACTAAAGGCACATTGACAGTTCATG
AGCGGATCACACTCAGTCTTAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11901:2626..4751-

>mRNA_Ecto-sp13_S_contig11901.1622.1 ID=mRNA_Ecto-sp13_S_contig11901.1622.1|Name=mRNA_Ecto-sp13_S_contig11901.1622.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11901:2626..4751- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCTTCCGCGGGCGGGGTGAAGGGGAGAGCGAGGCTGGAATTCGACGCGC
ACAGCCAATTCCCGGTTGTGAAGTTTTAACATGCGTCCGAAGAAATTCCT
CCATGGTGCGGTTAATCGTCCGGCTAGAGCAGTACAGCGTCAGGTACCAG
CGTTGTTTGTGGGTGTCTGTCGAACAACATTGCAAGAACTGCAAAACGTC
CACGGACCAAAACGAAGTCCCAGCTCGGACTAAAGGCACATTGACAGTTC
ATGAGCGGATCACACTCAGTCTTAGGTGA
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