mRNA_Ecto-sp13_S_contig11901.1621.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11901.1621.1 vs. uniprot
Match: D7FS55_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS55_ECTSI) HSP 1 Score: 137 bits (346), Expect = 2.110e-38 Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 1
Query: 28 LSLHFGWVSCATLVNLNNYISLLPFSDKGKLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVASEKG 246
+SLHFGWVSCATLVN NNYISLLPFSDKGKLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVASEKG
Sbjct: 201 VSLHFGWVSCATLVNFNNYISLLPFSDKGKLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVASEKG 273
BLAST of mRNA_Ecto-sp13_S_contig11901.1621.1 vs. uniprot
Match: D8LCC2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCC2_ECTSI) HSP 1 Score: 75.9 bits (185), Expect = 3.110e-14 Identity = 41/74 (55.41%), Postives = 51/74 (68.92%), Query Frame = 1
Query: 28 LSLHFGWVSCATLVNLNNYISLL-PFSDKGKLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVASEKG 246
LSLH GW+SCATLVNLN Y + + S++ KL +L S+ +AV L VA+T DP+YA VVAWAL AV S G
Sbjct: 458 LSLHLGWISCATLVNLNGYFATINKLSNRVKLGLALGSVVAAVALGVAITLLREDPIYAAVVAWALWAVGSPAG 531
BLAST of mRNA_Ecto-sp13_S_contig11901.1621.1 vs. uniprot
Match: A0A7S3AHI9_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AHI9_9EUKA) HSP 1 Score: 71.2 bits (173), Expect = 1.220e-13 Identity = 36/73 (49.32%), Postives = 54/73 (73.97%), Query Frame = 1
Query: 28 LSLHFGWVSCATLVNLNNYISLLPFSDKGKLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVASEKG 246
++LHFGW++ A LVNLNNY++ S + K + AS +A+G A+ V+ TGDP++AGV+AWAL+AVA++ G
Sbjct: 54 VALHFGWITAAALVNLNNYLARQETSIRAKEVGAHASTLAALGTALYVSTCTGDPIFAGVIAWALAAVAADGG 126
BLAST of mRNA_Ecto-sp13_S_contig11901.1621.1 vs. uniprot
Match: A4S135_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S135_OSTLU) HSP 1 Score: 72.8 bits (177), Expect = 1.300e-13 Identity = 41/73 (56.16%), Postives = 52/73 (71.23%), Query Frame = 1
Query: 28 LSLHFGWVSCATLVNLNNYISLLPFSDKGKLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVASEKG 246
LS+HFGW+SCA LVNLN++++ D +L + S A GL AVT TTGDPVYA V+AWAL+AVAS+ G
Sbjct: 145 LSMHFGWISCAALVNLNSHVAKTCAPDT-QLATAFLSAFGAGGLGAAVTLTTGDPVYALVIAWALTAVASDGG 216
BLAST of mRNA_Ecto-sp13_S_contig11901.1621.1 vs. uniprot
Match: F0YJX7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJX7_AURAN) HSP 1 Score: 73.2 bits (178), Expect = 2.540e-13 Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 1
Query: 1 RTDDHLAFLLSLHFGWVSCATLVNLNNYISLLPFSDKGKLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVASEKG 246
R D + + LSLHF WV+CATLVN+N Y++L + K +L S+A A A V TTGDP+Y VVAWAL+AVA++ G
Sbjct: 278 RNDLLVRWPLSLHFAWVTCATLVNINKYLALRGADLRVKEAGALGSVAVAAAAAAYVLRTTGDPLYGFVVAWALAAVAADGG 359
BLAST of mRNA_Ecto-sp13_S_contig11901.1621.1 vs. uniprot
Match: A0A4D9D883_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D883_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 2.260e-12 Identity = 42/72 (58.33%), Postives = 50/72 (69.44%), Query Frame = 1
Query: 28 LSLHFGWVSCATLVNLNNYISLLPFSDKG-KLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVASE 240
LSLHFGW++CATLVNLN + ++ P G KL +LASI AV L VT +GDPV A VVAWAL AVA +
Sbjct: 262 LSLHFGWITCATLVNLNGWFAVAPTLRTGDKLGLALASINVAVTLGSQVTLASGDPVIALVVAWALYAVAHD 333
BLAST of mRNA_Ecto-sp13_S_contig11901.1621.1 vs. uniprot
Match: A0A090N4T8_OSTTA (Unnamed product n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090N4T8_OSTTA) HSP 1 Score: 62.8 bits (151), Expect = 9.980e-10 Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 1
Query: 28 LSLHFGWVSCATLVNLNNYISLLPFSDKGKLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVASEKG 246
LSLHFGW+SCA LVN+N++++ D ++ F+ S A L V+ +GD VY VVAWAL+AVAS+ G
Sbjct: 203 LSLHFGWISCAALVNVNSHVAKTCAIDT-QIAFAFLSAFGASALGAGVSVFSGDAVYGAVVAWALAAVASDGG 274
BLAST of mRNA_Ecto-sp13_S_contig11901.1621.1 vs. uniprot
Match: A0A1Y5IB82_OSTTA (Uncharacterized protein n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5IB82_OSTTA) HSP 1 Score: 62.8 bits (151), Expect = 1.300e-9 Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 1
Query: 28 LSLHFGWVSCATLVNLNNYISLLPFSDKGKLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVASEKG 246
LSLHFGW+SCA LVN+N++++ D ++ F+ S A L V+ +GD VY VVAWAL+AVAS+ G
Sbjct: 500 LSLHFGWISCAALVNVNSHVAKTCAIDT-QIAFAFLSAFGASALGAGVSVFSGDAVYGAVVAWALAAVASDGG 571
BLAST of mRNA_Ecto-sp13_S_contig11901.1621.1 vs. uniprot
Match: A0A7S1SIL2_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SIL2_9CHLO) HSP 1 Score: 59.7 bits (143), Expect = 3.540e-9 Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 1
Query: 28 LSLHFGWVSCATLVNLNNYISLLPFSDKGKLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVASEKG 246
LSLHFGW++ A++V+LN+ ++ L S +L + AS+ + + VT TGDP+YA +AWALS VAS+ G
Sbjct: 56 LSLHFGWITAASVVSLNS-LAALTLSLPAQLATAFASVVGSAVVGTGVTVVTGDPLYALTLAWALSGVASDGG 127
BLAST of mRNA_Ecto-sp13_S_contig11901.1621.1 vs. uniprot
Match: B7FPJ2_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPJ2_PHATC) HSP 1 Score: 58.5 bits (140), Expect = 3.330e-8 Identity = 32/70 (45.71%), Postives = 43/70 (61.43%), Query Frame = 1
Query: 28 LSLHFGWVSCATLVNLNNYISLLPFSDKGKLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVAS 237
L++HFGW + ATLVNLN +++ SD + AS +A L V VT T G PVY +AWAL+A A+
Sbjct: 201 LTMHFGWATAATLVNLNGCVAMSDVSDTFVIATGHASALAATALGVGVTLTQGSPVYGLTIAWALAACAN 270 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11901.1621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11901.1621.1 >prot_Ecto-sp13_S_contig11901.1621.1 ID=prot_Ecto-sp13_S_contig11901.1621.1|Name=mRNA_Ecto-sp13_S_contig11901.1621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp RTDDHLAFLLSLHFGWVSCATLVNLNNYISLLPFSDKGKLNFSLASIASAback to top mRNA from alignment at Ecto-sp13_S_contig11901:119..364+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11901.1621.1 ID=mRNA_Ecto-sp13_S_contig11901.1621.1|Name=mRNA_Ecto-sp13_S_contig11901.1621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11901:119..364+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11901:119..364+ >mRNA_Ecto-sp13_S_contig11901.1621.1 ID=mRNA_Ecto-sp13_S_contig11901.1621.1|Name=mRNA_Ecto-sp13_S_contig11901.1621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11901:119..364+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |