mRNA_Ecto-sp13_S_contig11901.1621.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11901.1621.1
Unique NamemRNA_Ecto-sp13_S_contig11901.1621.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11901.1621.1 vs. uniprot
Match: D7FS55_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS55_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 2.110e-38
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 1
Query:   28 LSLHFGWVSCATLVNLNNYISLLPFSDKGKLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVASEKG 246
            +SLHFGWVSCATLVN NNYISLLPFSDKGKLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVASEKG
Sbjct:  201 VSLHFGWVSCATLVNFNNYISLLPFSDKGKLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVASEKG 273          
BLAST of mRNA_Ecto-sp13_S_contig11901.1621.1 vs. uniprot
Match: D8LCC2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCC2_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 3.110e-14
Identity = 41/74 (55.41%), Postives = 51/74 (68.92%), Query Frame = 1
Query:   28 LSLHFGWVSCATLVNLNNYISLL-PFSDKGKLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVASEKG 246
            LSLH GW+SCATLVNLN Y + +   S++ KL  +L S+ +AV L VA+T    DP+YA VVAWAL AV S  G
Sbjct:  458 LSLHLGWISCATLVNLNGYFATINKLSNRVKLGLALGSVVAAVALGVAITLLREDPIYAAVVAWALWAVGSPAG 531          
BLAST of mRNA_Ecto-sp13_S_contig11901.1621.1 vs. uniprot
Match: A0A7S3AHI9_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AHI9_9EUKA)

HSP 1 Score: 71.2 bits (173), Expect = 1.220e-13
Identity = 36/73 (49.32%), Postives = 54/73 (73.97%), Query Frame = 1
Query:   28 LSLHFGWVSCATLVNLNNYISLLPFSDKGKLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVASEKG 246
            ++LHFGW++ A LVNLNNY++    S + K   + AS  +A+G A+ V+  TGDP++AGV+AWAL+AVA++ G
Sbjct:   54 VALHFGWITAAALVNLNNYLARQETSIRAKEVGAHASTLAALGTALYVSTCTGDPIFAGVIAWALAAVAADGG 126          
BLAST of mRNA_Ecto-sp13_S_contig11901.1621.1 vs. uniprot
Match: A4S135_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S135_OSTLU)

HSP 1 Score: 72.8 bits (177), Expect = 1.300e-13
Identity = 41/73 (56.16%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   28 LSLHFGWVSCATLVNLNNYISLLPFSDKGKLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVASEKG 246
            LS+HFGW+SCA LVNLN++++     D  +L  +  S   A GL  AVT TTGDPVYA V+AWAL+AVAS+ G
Sbjct:  145 LSMHFGWISCAALVNLNSHVAKTCAPDT-QLATAFLSAFGAGGLGAAVTLTTGDPVYALVIAWALTAVASDGG 216          
BLAST of mRNA_Ecto-sp13_S_contig11901.1621.1 vs. uniprot
Match: F0YJX7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJX7_AURAN)

HSP 1 Score: 73.2 bits (178), Expect = 2.540e-13
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 1
Query:    1 RTDDHLAFLLSLHFGWVSCATLVNLNNYISLLPFSDKGKLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVASEKG 246
            R D  + + LSLHF WV+CATLVN+N Y++L     + K   +L S+A A   A  V  TTGDP+Y  VVAWAL+AVA++ G
Sbjct:  278 RNDLLVRWPLSLHFAWVTCATLVNINKYLALRGADLRVKEAGALGSVAVAAAAAAYVLRTTGDPLYGFVVAWALAAVAADGG 359          
BLAST of mRNA_Ecto-sp13_S_contig11901.1621.1 vs. uniprot
Match: A0A4D9D883_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D883_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.260e-12
Identity = 42/72 (58.33%), Postives = 50/72 (69.44%), Query Frame = 1
Query:   28 LSLHFGWVSCATLVNLNNYISLLPFSDKG-KLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVASE 240
            LSLHFGW++CATLVNLN + ++ P    G KL  +LASI  AV L   VT  +GDPV A VVAWAL AVA +
Sbjct:  262 LSLHFGWITCATLVNLNGWFAVAPTLRTGDKLGLALASINVAVTLGSQVTLASGDPVIALVVAWALYAVAHD 333          
BLAST of mRNA_Ecto-sp13_S_contig11901.1621.1 vs. uniprot
Match: A0A090N4T8_OSTTA (Unnamed product n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090N4T8_OSTTA)

HSP 1 Score: 62.8 bits (151), Expect = 9.980e-10
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   28 LSLHFGWVSCATLVNLNNYISLLPFSDKGKLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVASEKG 246
            LSLHFGW+SCA LVN+N++++     D  ++ F+  S   A  L   V+  +GD VY  VVAWAL+AVAS+ G
Sbjct:  203 LSLHFGWISCAALVNVNSHVAKTCAIDT-QIAFAFLSAFGASALGAGVSVFSGDAVYGAVVAWALAAVASDGG 274          
BLAST of mRNA_Ecto-sp13_S_contig11901.1621.1 vs. uniprot
Match: A0A1Y5IB82_OSTTA (Uncharacterized protein n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5IB82_OSTTA)

HSP 1 Score: 62.8 bits (151), Expect = 1.300e-9
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   28 LSLHFGWVSCATLVNLNNYISLLPFSDKGKLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVASEKG 246
            LSLHFGW+SCA LVN+N++++     D  ++ F+  S   A  L   V+  +GD VY  VVAWAL+AVAS+ G
Sbjct:  500 LSLHFGWISCAALVNVNSHVAKTCAIDT-QIAFAFLSAFGASALGAGVSVFSGDAVYGAVVAWALAAVASDGG 571          
BLAST of mRNA_Ecto-sp13_S_contig11901.1621.1 vs. uniprot
Match: A0A7S1SIL2_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SIL2_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 3.540e-9
Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 1
Query:   28 LSLHFGWVSCATLVNLNNYISLLPFSDKGKLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVASEKG 246
            LSLHFGW++ A++V+LN+ ++ L  S   +L  + AS+  +  +   VT  TGDP+YA  +AWALS VAS+ G
Sbjct:   56 LSLHFGWITAASVVSLNS-LAALTLSLPAQLATAFASVVGSAVVGTGVTVVTGDPLYALTLAWALSGVASDGG 127          
BLAST of mRNA_Ecto-sp13_S_contig11901.1621.1 vs. uniprot
Match: B7FPJ2_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPJ2_PHATC)

HSP 1 Score: 58.5 bits (140), Expect = 3.330e-8
Identity = 32/70 (45.71%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   28 LSLHFGWVSCATLVNLNNYISLLPFSDKGKLNFSLASIASAVGLAVAVTGTTGDPVYAGVVAWALSAVAS 237
            L++HFGW + ATLVNLN  +++   SD   +    AS  +A  L V VT T G PVY   +AWAL+A A+
Sbjct:  201 LTMHFGWATAATLVNLNGCVAMSDVSDTFVIATGHASALAATALGVGVTLTQGSPVYGLTIAWALAACAN 270          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11901.1621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FS55_ECTSI2.110e-3897.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LCC2_ECTSI3.110e-1455.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3AHI9_9EUKA1.220e-1349.32Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A4S135_OSTLU1.300e-1356.16Uncharacterized protein n=1 Tax=Ostreococcus lucim... [more]
F0YJX7_AURAN2.540e-1350.00Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A4D9D883_9STRA2.260e-1258.33Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A090N4T8_OSTTA9.980e-1047.95Unnamed product n=1 Tax=Ostreococcus tauri TaxID=7... [more]
A0A1Y5IB82_OSTTA1.300e-947.95Uncharacterized protein n=1 Tax=Ostreococcus tauri... [more]
A0A7S1SIL2_9CHLO3.540e-945.21Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
B7FPJ2_PHATC3.330e-845.71Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11901contigEcto-sp13_S_contig11901:119..364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score139.0
Seed ortholog evalue9.6e-31
Seed eggNOG ortholog2880.D7FS55
Model size246
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG OGs2CRKW@1,2S47J@2759
Cds size246
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462629.376908-CDS-Ecto-sp13_S_contig11901:118..3641681462629.376908-CDS-Ecto-sp13_S_contig11901:118..364Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11901 119..364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11901.1621.1prot_Ecto-sp13_S_contig11901.1621.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11901 119..364 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11901.1621.1

>prot_Ecto-sp13_S_contig11901.1621.1 ID=prot_Ecto-sp13_S_contig11901.1621.1|Name=mRNA_Ecto-sp13_S_contig11901.1621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
RTDDHLAFLLSLHFGWVSCATLVNLNNYISLLPFSDKGKLNFSLASIASA
VGLAVAVTGTTGDPVYAGVVAWALSAVASEKG
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mRNA from alignment at Ecto-sp13_S_contig11901:119..364+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11901.1621.1 ID=mRNA_Ecto-sp13_S_contig11901.1621.1|Name=mRNA_Ecto-sp13_S_contig11901.1621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11901:119..364+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAACCGACGACCATCTCGCCTTTCTTCTCAGCCTTCACTTCGGGTGGGT GTCTTGCGCGACCCTGGTGAACCTCAACAACTACATCTCGCTGCTGCCCT TCTCCGACAAGGGCAAGCTAAACTTCTCGCTGGCGTCCATTGCGTCCGCG GTCGGCCTGGCGGTCGCCGTTACCGGGACCACCGGAGACCCGGTCTACGC CGGCGTGGTCGCTTGGGCTCTGTCGGCGGTGGCCAGCGAGAAGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11901:119..364+

>mRNA_Ecto-sp13_S_contig11901.1621.1 ID=mRNA_Ecto-sp13_S_contig11901.1621.1|Name=mRNA_Ecto-sp13_S_contig11901.1621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11901:119..364+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAACCGACGACCATCTCGCCTTTCTTCTCAGCCTTCACTTCGGGTGGGT
GTCTTGCGCGACCCTGGTGAACCTCAACAACTACATCTCGCTGCTGCCCT
TCTCCGACAAGGGCAAGCTAAACTTCTCGCTGGCGTCCATTGCGTCCGCG
GTCGGCCTGGCGGTCGCCGTTACCGGGACCACCGGAGACCCGGTCTACGC
CGGCGTGGTCGCTTGGGCTCTGTCGGCGGTGGCCAGCGAGAAGGGC
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