mRNA_Ecto-sp13_S_contig11896.1613.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11896.1613.1
Unique NamemRNA_Ecto-sp13_S_contig11896.1613.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11896.1613.1 vs. uniprot
Match: A0A6H5L350_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L350_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 5.340e-40
Identity = 82/88 (93.18%), Postives = 82/88 (93.18%), Query Frame = 2 
Query:  941 MVVRGGVGNGQGGATMHGGFDQFQAPGQFSRPAQNNVQGQQAYGIQQQAYSSAHGGGVQQVQQVQLQQGFTPQGSNQFAPQQQQPMMG 1204
            MVVRGGVGNGQG AT H GFDQFQAPGQF RPAQNNVQGQQAYGIQQQAYSSA GGGVQQVQQVQLQQ FTPQGSNQFAPQQQQPMMG
Sbjct:    1 MVVRGGVGNGQGSATTHSGFDQFQAPGQFFRPAQNNVQGQQAYGIQQQAYSSAQGGGVQQVQQVQLQQDFTPQGSNQFAPQQQQPMMG 88
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11896.1613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L350_9PHAE5.340e-4093.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11896contigEcto-sp13_S_contig11896:652..4646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2239
Hectar predicted targeting categoryother localisation
Exons6
Cds size1257
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11896.1613.1prot_Ecto-sp13_S_contig11896.1613.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11896 809..3821 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462628.3102818-UTR-Ecto-sp13_S_contig11896:651..8081681462628.3102818-UTR-Ecto-sp13_S_contig11896:651..808Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11896 652..808 +
1681462628.3717968-UTR-Ecto-sp13_S_contig11896:3821..46461681462628.3717968-UTR-Ecto-sp13_S_contig11896:3821..4646Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11896 3822..4646 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462628.318827-CDS-Ecto-sp13_S_contig11896:808..11871681462628.318827-CDS-Ecto-sp13_S_contig11896:808..1187Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11896 809..1187 +
1681462628.3268783-CDS-Ecto-sp13_S_contig11896:1631..21011681462628.3268783-CDS-Ecto-sp13_S_contig11896:1631..2101Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11896 1632..2101 +
1681462628.3377507-CDS-Ecto-sp13_S_contig11896:2341..24191681462628.3377507-CDS-Ecto-sp13_S_contig11896:2341..2419Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11896 2342..2419 +
1681462628.3457685-CDS-Ecto-sp13_S_contig11896:2671..27461681462628.3457685-CDS-Ecto-sp13_S_contig11896:2671..2746Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11896 2672..2746 +
1681462628.3537323-CDS-Ecto-sp13_S_contig11896:2980..31541681462628.3537323-CDS-Ecto-sp13_S_contig11896:2980..3154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11896 2981..3154 +
1681462628.3638818-CDS-Ecto-sp13_S_contig11896:3740..38211681462628.3638818-CDS-Ecto-sp13_S_contig11896:3740..3821Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11896 3741..3821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11896.1613.1

>prot_Ecto-sp13_S_contig11896.1613.1 ID=prot_Ecto-sp13_S_contig11896.1613.1|Name=mRNA_Ecto-sp13_S_contig11896.1613.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=419bp
MPWLRCVFVLRLPYQHLDCASQQLRRSAYALSLIFPLLSPAISLQSSSTM
KVTPLATTSDLLVSLESSDEEDEVPSARGGRQSMPHSQQQRSQQQQMVRR
QTAEGHVSPPKTTTTAIVPANGNGATGPSLLDRDLMAVFGAPSASTLAPQ
QQNSQQMQRQSPPSSFGNGAAPMAAGDDGGGMPRSRSGPASVSSSGSGMP
LLQPPTRDTPSFNRSTYNSGAAAQQQRPEVAPGAMVLHGGGAGAQPQQQQ
QQQQQQVPPGAMVVRGGVGNGQGGATMHGGFDQFQAPGQFSRPAQNNVQG
QQAYGIQQQAYSSAHGGGVQQVQQVQLQQGFTPQGSNQFAPQQQQPMMGQ
QQPMMGQQQPMMGQQQPMMRQQQPMMGQQPQQQQQQQQQPQQFQQAYPQQ
QQHQQYQQQQMHQQYQGF*
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mRNA from alignment at Ecto-sp13_S_contig11896:652..4646+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11896.1613.1 ID=mRNA_Ecto-sp13_S_contig11896.1613.1|Name=mRNA_Ecto-sp13_S_contig11896.1613.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3995bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11896:652..4646+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATTTGCAGCTCTGCTCTACATGTGTGCCACCACAAGCAATTTGTGGCAT
ACTGCAGTAGATACAGCCGGAGAGGAAAGTATCCGTATGTGCCCGACGAC
TCCTTGTCCTTCCGTATCTTTCGGTTGTTCGCGTGGATTTGCTGCCACCT
GGCAACGATGCCCTGGCTGCGATGCGTTTTTGTGCTGCGACTGCCATATC
AACACCTTGATTGCGCTTCCCAGCAGCTGCGTCGCAGTGCTTACGCTTTG
TCTCTGATCTTCCCGCTCCTTTCCCCCGCGATATCGCTTCAAAGTAGCAG
CACTATGAAGGTCACCCCGCTGGCGACGACGTCAGACCTTCTGGTCTCTC
TCGAGTCGTCGGATGAAGAAGACGAGGTACCGTCCGCCCGGGGAGGTCGG
CAATCCATGCCCCACTCGCAGCAACAGCGGTCGCAGCAGCAGCAAATGGT
TAGACGCCAGACCGCAGAAGGACATGTCTCTCCCCCAAAGACAACGACAA
CAGCGATAGTACCCGCCAACGGAAACGGAGCAACAGGTGTGACACAACGA
AAAATATGTGGGTGTTTAGTGGTGGCGTGGTGAGCGTTAAGAGGTTTATA
ATGATGTTTGTCCGGGGCGTGGTTGGCGTTATGTGCGAGGGTGAGACCGT
AAACTGGCCGTTTGTGGCCAGGCTGACAGGTCGTTTCAGTACGGGGGAAA
GACCAGGTAGATGCTTTAGAAGCCTTCCGAACTCTATGAGCCATCGCACT
TTTGACGCTCGAAAAGACAGAATTACAGCAGTTGCACTAGTAGGTGGCGA
TTGGGTACGACAGCATGGCTGAAGGGTTCAACCATGTCGTTTCCCGAGAG
TCTTACTATACATGCATCCATTGCAAGCAACACTGCAACGAGCATAGAGT
CAGTCGCTCAACTAAAGAACCAACTACTGTCACCAATCCCATGAATGATC
CGTGCGCTTGATGGTGCGTGTGACTCGCAGGGCCATCTCTCCTTGACAGA
GACCTCATGGCGGTTTTCGGAGCTCCCTCCGCGTCCACGCTCGCCCCCCA
ACAGCAAAATTCTCAGCAGATGCAACGGCAGTCGCCCCCGAGCTCGTTCG
GGAACGGGGCAGCGCCTATGGCCGCCGGGGATGACGGAGGGGGCATGCCG
AGGAGCCGTTCGGGGCCGGCCAGCGTTTCCTCCTCCGGTTCGGGGATGCC
GTTGTTGCAGCCGCCCACCAGGGACACTCCGTCCTTCAACCGATCCACGT
ACAACAGCGGGGCGGCGGCGCAGCAGCAACGACCTGAGGTGGCACCAGGG
GCCATGGTGCTGCACGGAGGCGGAGCAGGGGCACAACCACAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGGTGCCTCCGGGGGCGATGGTCGTGCGCGGAG
GTGTTGGGAACGGTCAAGGGGGCGCCACTATGCACGGCGGGTTTGATCAG
GTAAGTTTTACTTCGTTTTTTTTTCATGTTCAACATGATACGGGCACTCT
GTGTAGCCCTTCCTGTCGTCAGATTTTCATATGCGCTGCGATCAACGTTG
GTGCCAATGCTTGCCATGTTGGGTCTGTGGTGACTAGCTAGTGGTTCTTG
GACAAGATGTTTTGAGCTGTCTTCTGTCAACAACTTTCGTCACATCTCCC
TTCCCACCCTGGCCACGTTTTTCTTAACCTGCACCACCAGTTCCAAGCAC
CAGGGCAGTTCTCTCGACCAGCGCAGAACAACGTGCAGGGGCAGCAGGCG
TACGGCATACAGCAACAAGTGAGTTCACGCTGGCGATGGGTCTCGCCAAG
GCACCTTGTCCACCTGGGGACAGCTACTCACGAATTGATGCCTTTGTCAT
ACCAAAATCTTGTTGGGAATCTGTCAAGTTTCCTGTGCTTGGTAACCTGC
GCACTCTCCCTTGAAACGTCCAATCGCGGTTGCAACAATCATGATCTTGG
TTGTAGGACAGCCTGGCATGTCAAACGCCTTACCACTTTCCACGCCGTGT
AATCGCATGGTTCGTACCAGGCGTATTCCAGTGCTCACGGGGGAGGGGTG
CAGCAAGTGCAGCAAGTGCAACTCCAGCAAGGCTTCACGCCCCAGGTATA
CATATTTCGTGTTTCCTGAGCGGACAACATATCCACCTCCCAACGCACAC
GTGGGACATGGCTTTGTCGCCCGTGTAGTTGATCTGTTCATGCAGAGCGA
TCCCTGCTTGAGATAAGGCCCTTTCTACTCATGAATCTATCGCTGTCTGG
GGTGTTGGGCACGTTCTCGTGGTGATCGTCTCGTCCGTTCGTTGTATATG
CATTGTGTTGCCCTTCGACGCTTGCATAGGGAAGCAATCAGTTTGCTCCA
CAGCAGCAGCAGCCAATGATGGGACAACAGCAGCCCATGATGGGGCAACA
GCAGCCCATGATGGGGCAGCAACAGCCCATGATGAGGCAACAGCAGCCCA
TGATGGGTCAGCAACCGCAACAGCAGCAGCAGCAGCAGCAACAGCCACAG
CAGGTGAGGAGGGTGAGGTCGAACGGGTTATCCTACTGCGTAGCCTTCGA
TTTCACGGCTACTCATATGCATATAGACCAGCAGAATCATTCACCTCCTC
GTGTGGTTTGGTCTAGCGTCGCACGATCAAAATGACAATATTACTGTAGG
AGTTGACCATGGCTACCAGTGGAATATTACACAGCGGGCACTGGCTGAAG
ATCTTGAAATCCACGGGGACGGGCGGGCAGCAGACGGGGTCAGACCAGGC
ACCGGCATGAACAATGAGGAGTGCGTTCTTTCCCAGTACATGGTCGTTTG
TTTTATGCGTATGCGACATACTTTCAACAGCGCAGTTGTGTTTATTCTCG
TGTGCAGACGTTGGCTCGCTATGTAGTTGGGATACCTGGATTCCGACGAT
TATTCTGGAGCCCAAACTGTAGGGACGGCTGACATGGCTTTGGCCACCAT
CGGAGAAGAACATGTCGACTGGTTTTGCCTTGACGGCTGACCAGGCCTTG
CACCCGGCTCCAGGAATCCCGCATGCTGTTTCGTTGACCCCCCCCTGTTG
TGTCGTTCCTTGCGTGTGTGAATGTTCGGTATCGTGTAGTTTCAGCAGGC
ATACCCGCAACAGCAGCAGCATCAGCAGTACCAACAACAGCAGATGCACC
AGCAATATCAAGGGTTCTGAGTCCTGGCGACGATCGAACGGAGCGTTCAT
ACCCTGGGGATACTGTGATGTGCAAGATATATCGACAAAGGCATTGGCTG
TGTGGTTGCGCACCATTTAGGTGTACGGCTTTGAGGGGTTTCGATCGGAG
GCTTGATCGGGAGGAGTTGACGTTGGTTCTGGCCAGGGGAGATGTTTTCA
GTAGATATATTATAGCAGTACTTAAACGAAGGGGAAGGAAGGGAAGCTTC
GCCTCGTTCTGTTGTTGTTGTGCCTTCAGCGACTGGTAAATGTTTGGGTA
GTTTTTTTTTTTGTTTTTTTTTTCCCGGATGCACTTCTTCTTGGTTTTCC
TGCGAATTTTTCATGGTGACAGCGGAAAATTGTACACACAAAATTGAGGA
TTAGGGTGGCACTCTCCCTGCGGGAGACCCTGCGGGAGAGGCAACTCTCT
CTATTTCTTCCTTGACCACCCATGGCATGTTGGCTTCTTGTTTGGATTAA
TATACACACCGTTTTGTTCACCAACACCGTCCAAGTGTCGGGTTGCGTAT
TCCCCAAGTTTAGGCTCTCCTCGCTCATAAGTTTTTGTTGGCTTTTTCCT
GTGTTTGTTGTGTTCATCCTACTCTGCTACAGGGGCGTGTGGTACCGAAC
GTTAGCCTTGGCGCGTGGTTTACTCTCCTCCTACAAGGCCTATTCTTTGG
GGGTAATCGATGTTGCTGTTTAGTTATTTGAATAATTGGGATACTACGTG
CATTTTTTTGGCGCTGTGTAGGAGGACGAAAGACGGAATCCTCGAATGGT
TGATCGGCAACATCTCAACAATAGGGCAACGGGGCGCACGCCCAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11896:652..4646+

>mRNA_Ecto-sp13_S_contig11896.1613.1 ID=mRNA_Ecto-sp13_S_contig11896.1613.1|Name=mRNA_Ecto-sp13_S_contig11896.1613.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1257bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11896:652..4646+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCTGGCTGCGATGCGTTTTTGTGCTGCGACTGCCATATCAACACCT
TGATTGCGCTTCCCAGCAGCTGCGTCGCAGTGCTTACGCTTTGTCTCTGA
TCTTCCCGCTCCTTTCCCCCGCGATATCGCTTCAAAGTAGCAGCACTATG
AAGGTCACCCCGCTGGCGACGACGTCAGACCTTCTGGTCTCTCTCGAGTC
GTCGGATGAAGAAGACGAGGTACCGTCCGCCCGGGGAGGTCGGCAATCCA
TGCCCCACTCGCAGCAACAGCGGTCGCAGCAGCAGCAAATGGTTAGACGC
CAGACCGCAGAAGGACATGTCTCTCCCCCAAAGACAACGACAACAGCGAT
AGTACCCGCCAACGGAAACGGAGCAACAGGGCCATCTCTCCTTGACAGAG
ACCTCATGGCGGTTTTCGGAGCTCCCTCCGCGTCCACGCTCGCCCCCCAA
CAGCAAAATTCTCAGCAGATGCAACGGCAGTCGCCCCCGAGCTCGTTCGG
GAACGGGGCAGCGCCTATGGCCGCCGGGGATGACGGAGGGGGCATGCCGA
GGAGCCGTTCGGGGCCGGCCAGCGTTTCCTCCTCCGGTTCGGGGATGCCG
TTGTTGCAGCCGCCCACCAGGGACACTCCGTCCTTCAACCGATCCACGTA
CAACAGCGGGGCGGCGGCGCAGCAGCAACGACCTGAGGTGGCACCAGGGG
CCATGGTGCTGCACGGAGGCGGAGCAGGGGCACAACCACAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGGTGCCTCCGGGGGCGATGGTCGTGCGCGGAGG
TGTTGGGAACGGTCAAGGGGGCGCCACTATGCACGGCGGGTTTGATCAGT
TCCAAGCACCAGGGCAGTTCTCTCGACCAGCGCAGAACAACGTGCAGGGG
CAGCAGGCGTACGGCATACAGCAACAAGCGTATTCCAGTGCTCACGGGGG
AGGGGTGCAGCAAGTGCAGCAAGTGCAACTCCAGCAAGGCTTCACGCCCC
AGGGAAGCAATCAGTTTGCTCCACAGCAGCAGCAGCCAATGATGGGACAA
CAGCAGCCCATGATGGGGCAACAGCAGCCCATGATGGGGCAGCAACAGCC
CATGATGAGGCAACAGCAGCCCATGATGGGTCAGCAACCGCAACAGCAGC
AGCAGCAGCAGCAACAGCCACAGCAGTTTCAGCAGGCATACCCGCAACAG
CAGCAGCATCAGCAGTACCAACAACAGCAGATGCACCAGCAATATCAAGG
GTTCTGA
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