mRNA_Ecto-sp13_S_contig11880.1605.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11880.1605.1 vs. uniprot
Match: A0A6H5J9W0_9PHAE (GAF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J9W0_9PHAE) HSP 1 Score: 467 bits (1201), Expect = 1.980e-158 Identity = 245/251 (97.61%), Postives = 248/251 (98.80%), Query Frame = 1
Query: 580 AGEYIDMTVGIAMGISTMAAAALGNTISDVCGVGLGGIIENLATRLGLPPSKLSRAQMLLRTTRTAGLVGSAIGVLVGCLIGMFPLLFMPDPEVMEAVKRKEKIVGLVDAVVEEAAAFLSATSATLFILDREHEILWARRRGAPGTPNAGALQDLKIELAHRGAVSDAARNGEPVIMPAGAGGAAPSMLCMPVYGADGLVAGVVQVVGKKSNGKALDRGFTADDAKDLSALCSHISVALENIKRADEADEV 1332
AGEYIDMTVGIAMGISTMAAAALGNTISDV GVGLGG+IENLATRLGLPPSKLSRAQMLL+ TRTAGLVGSAIGVLVGCLIGMFPLLFMPDPEVMEAVKRKEKIVGLVDAVVEEAAAFLSATSATLFILDREHEILWARRRGAPGTPNAGALQDLKIELAHRGAVSDAARNGEPVIMPAGAGGAAPSMLCMPVYGADGLVAGVVQVVGKKSNGKA+D GFTADDAKDLSALCSHISVALENIKRADEADEV
Sbjct: 205 AGEYIDMTVGIAMGISTMAAAALGNTISDVAGVGLGGVIENLATRLGLPPSKLSRAQMLLQATRTAGLVGSAIGVLVGCLIGMFPLLFMPDPEVMEAVKRKEKIVGLVDAVVEEAAAFLSATSATLFILDREHEILWARRRGAPGTPNAGALQDLKIELAHRGAVSDAARNGEPVIMPAGAGGAAPSMLCMPVYGADGLVAGVVQVVGKKSNGKAIDGGFTADDAKDLSALCSHISVALENIKRADEADEV 455
BLAST of mRNA_Ecto-sp13_S_contig11880.1605.1 vs. uniprot
Match: A0A835YYR0_9STRA (GAF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYR0_9STRA) HSP 1 Score: 213 bits (543), Expect = 3.330e-61 Identity = 128/264 (48.48%), Postives = 163/264 (61.74%), Query Frame = 1
Query: 580 AGEYIDMTVGIAMGISTMAAAALGNTISDVCGVGLGGIIENLATRLGLPPSKLSRAQMLLRTTRTAGLVGSAIGVLVGCLIGMFPLLFMPDPEVMEAVKRKEKIVGLVDAVVEEAAAFLSATSATLFILDREHEILWARRRGAPGTPNAGALQDLKIELAHRGAVSDAARNGEPVIMPAGAGGAAPSMLCMPVYGADGLVAGVVQVVGKKSN-----GKALD-----------RGFTADDAKDLSALCSHISVALENIKRADEA 1323
AGEYID+T+G+ +GISTMAAAALGN +SD+ GVGLGG++E A ++GLP LSRAQM LR+ RTAG +G AIGV +GCL+GMFPLL +P PE +E KR EK V LVD V+ EA FL TLFI D + + LW++ RG +++DL + G V AR G+P+ +PA A A S+LCMPV + V VVQ VGK+ + A D FTA D L+ALCSHIS LE ++R A
Sbjct: 103 AGEYIDLTLGVTLGISTMAAAALGNLVSDLAGVGLGGVVEGWAAKIGLPDPGLSRAQMNLRSVRTAGHIGCAIGVTIGCLLGMFPLLLLPSPEALEEKKRIEKTVALVDVVMHEATDFLDCEGVTLFIADHDQQKLWSQLRGYD------SIRDLTLSF-DEGPVGRVAREGKPLNLPADA--ATKSVLCMPVTDSRHKVRAVVQAVGKRGDKTPPPSTAADDTDVLSXXXXXXSFTAADEAALAALCSHISADLEALERTGAA 357
BLAST of mRNA_Ecto-sp13_S_contig11880.1605.1 vs. uniprot
Match: A0A2R5GS23_9STRA (cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GS23_9STRA) HSP 1 Score: 157 bits (398), Expect = 4.760e-40 Identity = 108/259 (41.70%), Postives = 152/259 (58.69%), Query Frame = 1
Query: 580 AGEYIDMTVGIAMGISTMAAAALGNTISDVCGVGLGGIIENLATRLGLPPS-KLSRAQMLLRTTRTAGLVGSAIGVLVGCLIGMFPLLFMPDPEVMEAVKRKEKIVGLVDAVVEEAAAFLSATSATLFILDREHEILWARRRGAPGTPNAGALQDLKIELA-HRGAVSDAARNGEPV---IMPAGAGGAAPSMLCMPVYGADGLVAGVVQVVGKKSNGKALDRGFTADDAKDLSALCSHISVALENIKRADEADEVKKK 1341
AGEY D T+G+A GISTMAAA LGN +SDV G+G+GG++E +LGL + L+RAQ + R A L+G+AIGV VGCLIGMFPLLFM D +V+ KR+ K+ L +AV++ L A SATL+I+D + + LW + + T + +I + + V A G+ V I PAG ++LC P++G G + GVVQV K+ GK F D L+A+ +HIS ALE + +A + K +
Sbjct: 122 AGEYFDATLGVAFGISTMAAAGLGNLVSDVLGLGVGGMVEERFEKLGLIRNPNLTRAQESMPVVRRARLLGNAIGVSVGCLIGMFPLLFM-DFDVIARRKRQSKLDELFEAVMKYVNEALQAESATLYIVDADRKELWTQTSVSTDTASGIRRDTRRIRVPIEKSLVGYCATTGDVVNQAIQPAG------NVLCTPIFGRTGDIIGVVQVQ-NKNEGKR----FKVKDEVALAAMSAHISCALERVISDSDAPDEKSE 368
BLAST of mRNA_Ecto-sp13_S_contig11880.1605.1 vs. uniprot
Match: A0A7S3PD62_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PD62_9STRA) HSP 1 Score: 145 bits (366), Expect = 7.220e-35 Identity = 99/280 (35.36%), Postives = 153/280 (54.64%), Query Frame = 1
Query: 580 AGEYIDMTVGIAMGISTMAAAALGNTISDVCGVGLGGIIENLATR-LGLPPSKLSRAQMLLRTTRTAGLVGSAIGVLVGCLIGMFPLLFMPDPEVMEAVKRKEKIVGLVDAVVEEAAAFLSATSATLFIL-------------DREHEILWARRRGAPGTPNAGALQDLKIELAHRGAVSDAARNGEPVIMPA--------GAGGAAPSMLCMPVYGADGLVAGVVQVVGKKSNGKALD--------RGFTADDAKDLSALCSHISVALENIKRADEADE 1329
AG+ ID ++G+A+GISTM AAA+GN +SDV GV LG ++E+ R L LP LS AQ L + R A G A+G+++GC+IGMFPLLF+ D ++A KR+ + + V++EA++ + A L++L + E + L+A+ G + + + L + R A++ + N E V+ AG A SMLC+PV +G V+Q +GK S GK D +GF+ D + L AL SHISV+L+++ + +E
Sbjct: 177 AGDMIDTSLGVALGISTMCAAAIGNIVSDVAGVMLGTVVEDFCARYLDLPTPVLSTAQRQLASVRFANQFGCAVGLIIGCIIGMFPLLFI-DSNKIQARKREAAMDAIFRDVMDEASSLIGARRTCLYVLCSKEPDNENALRPNSEGKYLYAKYGGTSTSQESARVITLGRGIVSRAALTGESWNIENVLSEPDFVKEEAEAAGDEAKSMLCVPVLDGEGKTIAVIQALGKMSTGKEHDTPAGSPSVKGFSNSDVQVLKALASHISVSLQHMYEVEAYEE 455
BLAST of mRNA_Ecto-sp13_S_contig11880.1605.1 vs. uniprot
Match: A0A7S4N214_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N214_9STRA) HSP 1 Score: 131 bits (329), Expect = 2.050e-30 Identity = 89/258 (34.50%), Postives = 136/258 (52.71%), Query Frame = 1
Query: 577 QAGEYIDMTVGIAMGISTMAAAALGNTISDVCGVGLGGIIENLATRLGLPPSKLSRAQMLLRTTRTAGLVGSAIGVLVGCLIGMFPLLFMPDPEVMEAVKRKEKIVGLVDAVVEEAAAFLSATSATLFILDREHEILWAR-RRGAPG---------TPNAGALQDLKIELAHRGAVSDAARNGEPVIMPAGAGGAAPSMLCMPVYGADGLVAGVVQVVGKKSNGKALDRGFTADDAKDLSALCSHISVALENIKRADE 1320
QAGE ID+T+G+ G+ST+ AA G +SDV G GG+++ T++ LP LS+AQ+ LR+ R VG IGV+ GCL+GM L FM D + E +K+ +++ + +AV+ + + A TL++ DRE + LW++ G G T AGA + + A D N E + G S+L +PV +G V G +Q+V KK N D F +DAK + L SH+S ++ + D+
Sbjct: 136 QAGEMIDLTIGVTFGLSTLTAAGFGQCVSDVAGFTTGGLVDAAVTKMNLPSHGLSQAQLRLRSARVYHTVGGCIGVVTGCLLGMCSLFFM-DTDRAEKLKKAKELTSIFEAVMTDGHKLIKAERCTLWMFDREKDELWSKVATGMKGDNILRIPASTGVAGAAVKSEDIVNIHDAYEDDRFNKE---IDQQTGYRTRSILAVPVKNEEGKVIGAIQMVNKK-NEDGTDAVFDINDAKMMMMLSSHVSTFIKIVTGHDD 388
BLAST of mRNA_Ecto-sp13_S_contig11880.1605.1 vs. uniprot
Match: A0A7S1BE73_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BE73_9STRA) HSP 1 Score: 129 bits (325), Expect = 3.160e-29 Identity = 98/283 (34.63%), Postives = 144/283 (50.88%), Query Frame = 1
Query: 580 AGEYIDMTVGIAMGISTMAAAALGNTISDVCGVGLGGIIENLATRLGLP-PSKLSRAQMLLRTTRTAGLVGSAIGVLVGCLIGMFPLLFMPDPEVMEAVKRKEK---IVGLVDAVVEEAAAFLSATSATLFIL--------------DREHEILWARRRGAPGTPNAGALQDLKIELAHRGAVSDAARNGEPVIM-------PAGAGGAAP---SMLCMPVYGADGLVAGVVQVVGKKSNGKAL--------DRGFTADDAKDLSALCSHISVALENIKRADE 1320
AG+ ID+ VG +STM AAA+GN ISDV GV +G ++E+ A + GL + LSR QM LR+ A VG A+G+ +GC+IGM PLLF+ A KRK K + + + EA F+ A S TLF++ ++E LW++ +G LQ+L+I A +G + A N E + M G G +M+C PV+ + G V V+ K+ G A R F +D + L AL +H+SVAL+N++ D+
Sbjct: 199 AGDAIDLHVGAIFTMSTMCAAAIGNIISDVAGVMMGTVVEDFARKFGLEWETNLSRIQMKLRSVMLAKKVGCAVGITIGCIIGMIPLLFIDG----NAAKRKNKEAAVDRIFKDIASEAKKFIGAESTTLFLVVKGESYNQAVDDNDEKEDYHLWSKYADKA----SGKLQELRIPYA-QGIIGQVAINRETISMHDIRREEDLGIGAVLSDTRNMICCPVFDSKGNVIAVINATNKQDQGSATFSESDSSKPREFLTNDIQALQALGTHVSVALQNLEDMDD 472
BLAST of mRNA_Ecto-sp13_S_contig11880.1605.1 vs. uniprot
Match: A0A7S4RW45_9DINO (Hypothetical protein n=5 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4RW45_9DINO) HSP 1 Score: 125 bits (315), Expect = 1.380e-28 Identity = 88/255 (34.51%), Postives = 133/255 (52.16%), Query Frame = 1
Query: 580 AGEYIDMTVGIAMGISTMAAAALGNTISDVCGVGLGGIIENLATRLGLPPSKLSRAQMLLRTTRTAGLVGSAIGVLVGCLIGMFPLLFMPDPEVMEAVKRKEKIVGLVDAVVEEAAAFLSATSATLFILDREHEILWAR-RRGAPGTPNAGALQDLKI--------ELAHRGAVSDAAR----NGEPVIMPAGAGGAAPSMLCMPVYGADGLVAGVVQVVGKKSNGKALDRGFTADDAKDLSALCSHISVALENI 1305
AG+ ID TVG+ +G+ T+AAAA+G +SD CGV GG IE + +LGLP L+ AQ L T+ +G IGV+VGC+IGM LL + D + E K+ +++ ++ V+ + + +S ATL+I+D+E LW+ G G +D+ I E+A+ V+ R NG +P SML PV DG V+Q++ K+ + F ADD K L C HI++ +E +
Sbjct: 128 AGDAIDNTVGVCLGLPTLAAAAMGQVLSDTCGVTFGGTIEAVCLKLGLPLPGLTDAQQRLGVTKRVSTLGGVIGVIVGCIIGMSNLLLI-DLQASERAKKAKELETIMKTVMADGRSSMSCERATLWIVDKEAGELWSSVATGVDGILRVNYTKDVSIAGWVAQHSEMANVADVTKDPRWRRDNGSSDFVPK-------SMLVGPVV-RDGEAVAVIQLLNKREGERITT--FNADDEKVLQMFCGHIAIFMEQL 371
BLAST of mRNA_Ecto-sp13_S_contig11880.1605.1 vs. uniprot
Match: A0A7S4SRR6_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SRR6_9DINO) HSP 1 Score: 127 bits (320), Expect = 2.800e-28 Identity = 94/260 (36.15%), Postives = 135/260 (51.92%), Query Frame = 1
Query: 583 GEYIDMTVGIAMGISTMAAAALGNTISDVCGVGLGGIIENLATRLGLPPSKLSRAQMLLRTTRTAGLVGSAIGVLVGCLIGMFPLLFMPDPEVMEAVKRKEKIVGLVDAVVEEAAAFLSATSATLFILDREHEILWARRRGAPGTPNAGALQDLKIELAHRGAVSDAAR--NGEPVIMPA--------------GAGGAAPSMLCMPVYGAD------GLVAGVVQVVGKKSNGKALDRGFTADDAKDLSALCSHISVAL 1296
G+ ID T+ + G STMAAAALGNT+SD GV GG++E++A + G+ LSRAQ + T+ +G IG++VGCLIGMFPLL + D E +KR+ + + + VV AA LSA +A + +D + L+ R T + G + KI G V+++ R N + P G G S+LCMP++ D + GV++V+ KK FT D L+ALCSHIS +L
Sbjct: 114 GDVIDATLCVTCGFSTMAAAALGNTLSDGVGVFSGGLVEDVARKWGVEAPPLSRAQQTMEVTKRWERLGQLIGIIVGCLIGMFPLLLI-DSHKAELLKRERTLDDMYEHVVTGAAEMLSAEAAMIMFVDGDQRELYTR-----STASVGGFRS-KIGEGIMGRVAESGRFLNIHDIRAPECRGFYSAARHDNYHGTGIVVSSVLCMPIFSYDESSQRADKIVGVLEVINKKDGSN-----FTEKDEDILAALCSHISTSL 361
BLAST of mRNA_Ecto-sp13_S_contig11880.1605.1 vs. uniprot
Match: A0A5B8MCN9_9CHLO (DUF2453 domain-containing transmembrane protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MCN9_9CHLO) HSP 1 Score: 125 bits (313), Expect = 3.040e-28 Identity = 89/263 (33.84%), Postives = 140/263 (53.23%), Query Frame = 1
Query: 580 AGEYIDMTVGIAMGISTMAAAALGNTISDVCGVGLGGIIENLATRL--GLPPSKLSRAQMLLRTTRTAGLVGSAIGVLVGCLIGMFPLLFMPDPEVMEAVKRKEKIVGLVDAVVEEAAA-----FLSATSATLFILDREHE-ILWARRRGAPGTPN---------------AGALQDLKIELAHRGAVSDAARNGEPVIMPAGAGGAAPSMLCMPVYGADGLVAGVVQVVGKKSNGKALDRGFTADDAKDLSALCSHISVALE 1299
AGE+I ++GI +G++TMAAA LG +SD+ G+ GG ++ + +L LP S L+ Q L ++R A G +GV +GCL+GM LLF+ D E +E + ++ + D VVE++A L A + L+++D E + +W R P G+ +DL + G+V AA +G GG +M+ +P+ G+DG + G +Q+V +K +G ++GFT DAK L LC+HIS LE
Sbjct: 125 AGEHIQSSIGITLGLTTMAAAGLGQVVSDISGIMSGGTVDAVVGKLLPNLPRSGLTSLQKDLSSSRIAQTAGGCVGVTIGCLLGMSVLLFV-DAEAVERQRTAAELERIFD-VVEKSAMDAVDRTLGAEMSILWLVDTEKDNTIWTRVVADGDVPTDLEVKKTDFVSAIKRTGSSRDLVNKTITTGSVQHAALDG---------GGPIKNMMTVPIVGSDGEILGAIQIVNRKDSGGG-EKGFTGQDAKVLKVLCAHISSFLE 375
BLAST of mRNA_Ecto-sp13_S_contig11880.1605.1 vs. uniprot
Match: A0A7S1QX46_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1QX46_ALECA) HSP 1 Score: 126 bits (316), Expect = 1.900e-27 Identity = 91/255 (35.69%), Postives = 136/255 (53.33%), Query Frame = 1
Query: 583 GEYIDMTVGIAMGISTMAAAALGNTISDVCGVGLGGIIENLATRLGLPPSKLSRAQMLLRTTRTAGLVGSAIGVLVGCLIGMFPLLFMPDPEVMEAVKRKEKIVGLVDAVVEEAAAFLSATSATLFILDREHEILWARRRGAPGTPNAGALQDLKI--ELAHRGA-VSDAARNGEPVIMPA------GAGGAAPSMLCMPVYGADGLVAGVVQVVGKKSNGKALDRGFTADDAKDLSALCSHISVALENIKRADE 1320
GE+ID T+ + + STMAAAA+GNT SDV G+ GG +E LA R+G L R Q L TR G +G+++GC++G PLL++ DP+ E ++R+++ + ++V+ + L A + L + + + E L++ +P PN +D+ +A G V+ A EP+ P G+G S+LCMP++ G V GV+ V KK G FT D LSA+CSHISVA K E
Sbjct: 116 GEFIDTTLCVMVNFSTMAAAAVGNTFSDVAGIFSGGAVEQLAVRMGFEEPALEREQRQLSVTRAWQYTGQCMGIVLGCILGCCPLLWI-DPKQAERLRREKEREDVFESVIIKVGKILQAEAVALLLFEGDRENLFSAHH-SPNLPNFRWPKDVGFIGHVATTGQFVNIAEIQEEPLYDPLYHDNLLGSGIRVQSILCMPIF-LSGRVHGVIVVFNKKVTGS-----FTHKDEDILSAICSHISVASAESKNTFE 362 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11880.1605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11880.1605.1 >prot_Ecto-sp13_S_contig11880.1605.1 ID=prot_Ecto-sp13_S_contig11880.1605.1|Name=mRNA_Ecto-sp13_S_contig11880.1605.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=254bp MTVGIAMGISTMAAAALGNTISDVCGVGLGGIIENLATRLGLPPSKLSRAback to top mRNA from alignment at Ecto-sp13_S_contig11880:517..4944+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11880.1605.1 ID=mRNA_Ecto-sp13_S_contig11880.1605.1|Name=mRNA_Ecto-sp13_S_contig11880.1605.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4428bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11880:517..4944+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11880:517..4944+ >mRNA_Ecto-sp13_S_contig11880.1605.1 ID=mRNA_Ecto-sp13_S_contig11880.1605.1|Name=mRNA_Ecto-sp13_S_contig11880.1605.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=762bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11880:517..4944+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |