mRNA_Ecto-sp13_S_contig11880.1605.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11880.1605.1
Unique NamemRNA_Ecto-sp13_S_contig11880.1605.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11880.1605.1 vs. uniprot
Match: A0A6H5J9W0_9PHAE (GAF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J9W0_9PHAE)

HSP 1 Score: 467 bits (1201), Expect = 1.980e-158
Identity = 245/251 (97.61%), Postives = 248/251 (98.80%), Query Frame = 1
Query:  580 AGEYIDMTVGIAMGISTMAAAALGNTISDVCGVGLGGIIENLATRLGLPPSKLSRAQMLLRTTRTAGLVGSAIGVLVGCLIGMFPLLFMPDPEVMEAVKRKEKIVGLVDAVVEEAAAFLSATSATLFILDREHEILWARRRGAPGTPNAGALQDLKIELAHRGAVSDAARNGEPVIMPAGAGGAAPSMLCMPVYGADGLVAGVVQVVGKKSNGKALDRGFTADDAKDLSALCSHISVALENIKRADEADEV 1332
            AGEYIDMTVGIAMGISTMAAAALGNTISDV GVGLGG+IENLATRLGLPPSKLSRAQMLL+ TRTAGLVGSAIGVLVGCLIGMFPLLFMPDPEVMEAVKRKEKIVGLVDAVVEEAAAFLSATSATLFILDREHEILWARRRGAPGTPNAGALQDLKIELAHRGAVSDAARNGEPVIMPAGAGGAAPSMLCMPVYGADGLVAGVVQVVGKKSNGKA+D GFTADDAKDLSALCSHISVALENIKRADEADEV
Sbjct:  205 AGEYIDMTVGIAMGISTMAAAALGNTISDVAGVGLGGVIENLATRLGLPPSKLSRAQMLLQATRTAGLVGSAIGVLVGCLIGMFPLLFMPDPEVMEAVKRKEKIVGLVDAVVEEAAAFLSATSATLFILDREHEILWARRRGAPGTPNAGALQDLKIELAHRGAVSDAARNGEPVIMPAGAGGAAPSMLCMPVYGADGLVAGVVQVVGKKSNGKAIDGGFTADDAKDLSALCSHISVALENIKRADEADEV 455          
BLAST of mRNA_Ecto-sp13_S_contig11880.1605.1 vs. uniprot
Match: A0A835YYR0_9STRA (GAF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYR0_9STRA)

HSP 1 Score: 213 bits (543), Expect = 3.330e-61
Identity = 128/264 (48.48%), Postives = 163/264 (61.74%), Query Frame = 1
Query:  580 AGEYIDMTVGIAMGISTMAAAALGNTISDVCGVGLGGIIENLATRLGLPPSKLSRAQMLLRTTRTAGLVGSAIGVLVGCLIGMFPLLFMPDPEVMEAVKRKEKIVGLVDAVVEEAAAFLSATSATLFILDREHEILWARRRGAPGTPNAGALQDLKIELAHRGAVSDAARNGEPVIMPAGAGGAAPSMLCMPVYGADGLVAGVVQVVGKKSN-----GKALD-----------RGFTADDAKDLSALCSHISVALENIKRADEA 1323
            AGEYID+T+G+ +GISTMAAAALGN +SD+ GVGLGG++E  A ++GLP   LSRAQM LR+ RTAG +G AIGV +GCL+GMFPLL +P PE +E  KR EK V LVD V+ EA  FL     TLFI D + + LW++ RG        +++DL +     G V   AR G+P+ +PA A  A  S+LCMPV  +   V  VVQ VGK+ +       A D             FTA D   L+ALCSHIS  LE ++R   A
Sbjct:  103 AGEYIDLTLGVTLGISTMAAAALGNLVSDLAGVGLGGVVEGWAAKIGLPDPGLSRAQMNLRSVRTAGHIGCAIGVTIGCLLGMFPLLLLPSPEALEEKKRIEKTVALVDVVMHEATDFLDCEGVTLFIADHDQQKLWSQLRGYD------SIRDLTLSF-DEGPVGRVAREGKPLNLPADA--ATKSVLCMPVTDSRHKVRAVVQAVGKRGDKTPPPSTAADDTDVLSXXXXXXSFTAADEAALAALCSHISADLEALERTGAA 357          
BLAST of mRNA_Ecto-sp13_S_contig11880.1605.1 vs. uniprot
Match: A0A2R5GS23_9STRA (cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GS23_9STRA)

HSP 1 Score: 157 bits (398), Expect = 4.760e-40
Identity = 108/259 (41.70%), Postives = 152/259 (58.69%), Query Frame = 1
Query:  580 AGEYIDMTVGIAMGISTMAAAALGNTISDVCGVGLGGIIENLATRLGLPPS-KLSRAQMLLRTTRTAGLVGSAIGVLVGCLIGMFPLLFMPDPEVMEAVKRKEKIVGLVDAVVEEAAAFLSATSATLFILDREHEILWARRRGAPGTPNAGALQDLKIELA-HRGAVSDAARNGEPV---IMPAGAGGAAPSMLCMPVYGADGLVAGVVQVVGKKSNGKALDRGFTADDAKDLSALCSHISVALENIKRADEADEVKKK 1341
            AGEY D T+G+A GISTMAAA LGN +SDV G+G+GG++E    +LGL  +  L+RAQ  +   R A L+G+AIGV VGCLIGMFPLLFM D +V+   KR+ K+  L +AV++     L A SATL+I+D + + LW +   +  T +       +I +   +  V   A  G+ V   I PAG      ++LC P++G  G + GVVQV   K+ GK     F   D   L+A+ +HIS ALE +    +A + K +
Sbjct:  122 AGEYFDATLGVAFGISTMAAAGLGNLVSDVLGLGVGGMVEERFEKLGLIRNPNLTRAQESMPVVRRARLLGNAIGVSVGCLIGMFPLLFM-DFDVIARRKRQSKLDELFEAVMKYVNEALQAESATLYIVDADRKELWTQTSVSTDTASGIRRDTRRIRVPIEKSLVGYCATTGDVVNQAIQPAG------NVLCTPIFGRTGDIIGVVQVQ-NKNEGKR----FKVKDEVALAAMSAHISCALERVISDSDAPDEKSE 368          
BLAST of mRNA_Ecto-sp13_S_contig11880.1605.1 vs. uniprot
Match: A0A7S3PD62_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PD62_9STRA)

HSP 1 Score: 145 bits (366), Expect = 7.220e-35
Identity = 99/280 (35.36%), Postives = 153/280 (54.64%), Query Frame = 1
Query:  580 AGEYIDMTVGIAMGISTMAAAALGNTISDVCGVGLGGIIENLATR-LGLPPSKLSRAQMLLRTTRTAGLVGSAIGVLVGCLIGMFPLLFMPDPEVMEAVKRKEKIVGLVDAVVEEAAAFLSATSATLFIL-------------DREHEILWARRRGAPGTPNAGALQDLKIELAHRGAVSDAARNGEPVIMPA--------GAGGAAPSMLCMPVYGADGLVAGVVQVVGKKSNGKALD--------RGFTADDAKDLSALCSHISVALENIKRADEADE 1329
            AG+ ID ++G+A+GISTM AAA+GN +SDV GV LG ++E+   R L LP   LS AQ  L + R A   G A+G+++GC+IGMFPLLF+ D   ++A KR+  +  +   V++EA++ + A    L++L             + E + L+A+  G   +  +  +  L   +  R A++  + N E V+            AG  A SMLC+PV   +G    V+Q +GK S GK  D        +GF+  D + L AL SHISV+L+++   +  +E
Sbjct:  177 AGDMIDTSLGVALGISTMCAAAIGNIVSDVAGVMLGTVVEDFCARYLDLPTPVLSTAQRQLASVRFANQFGCAVGLIIGCIIGMFPLLFI-DSNKIQARKREAAMDAIFRDVMDEASSLIGARRTCLYVLCSKEPDNENALRPNSEGKYLYAKYGGTSTSQESARVITLGRGIVSRAALTGESWNIENVLSEPDFVKEEAEAAGDEAKSMLCVPVLDGEGKTIAVIQALGKMSTGKEHDTPAGSPSVKGFSNSDVQVLKALASHISVSLQHMYEVEAYEE 455          
BLAST of mRNA_Ecto-sp13_S_contig11880.1605.1 vs. uniprot
Match: A0A7S4N214_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N214_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.050e-30
Identity = 89/258 (34.50%), Postives = 136/258 (52.71%), Query Frame = 1
Query:  577 QAGEYIDMTVGIAMGISTMAAAALGNTISDVCGVGLGGIIENLATRLGLPPSKLSRAQMLLRTTRTAGLVGSAIGVLVGCLIGMFPLLFMPDPEVMEAVKRKEKIVGLVDAVVEEAAAFLSATSATLFILDREHEILWAR-RRGAPG---------TPNAGALQDLKIELAHRGAVSDAARNGEPVIMPAGAGGAAPSMLCMPVYGADGLVAGVVQVVGKKSNGKALDRGFTADDAKDLSALCSHISVALENIKRADE 1320
            QAGE ID+T+G+  G+ST+ AA  G  +SDV G   GG+++   T++ LP   LS+AQ+ LR+ R    VG  IGV+ GCL+GM  L FM D +  E +K+ +++  + +AV+ +    + A   TL++ DRE + LW++   G  G         T  AGA    +  +    A  D   N E   +    G    S+L +PV   +G V G +Q+V KK N    D  F  +DAK +  L SH+S  ++ +   D+
Sbjct:  136 QAGEMIDLTIGVTFGLSTLTAAGFGQCVSDVAGFTTGGLVDAAVTKMNLPSHGLSQAQLRLRSARVYHTVGGCIGVVTGCLLGMCSLFFM-DTDRAEKLKKAKELTSIFEAVMTDGHKLIKAERCTLWMFDREKDELWSKVATGMKGDNILRIPASTGVAGAAVKSEDIVNIHDAYEDDRFNKE---IDQQTGYRTRSILAVPVKNEEGKVIGAIQMVNKK-NEDGTDAVFDINDAKMMMMLSSHVSTFIKIVTGHDD 388          
BLAST of mRNA_Ecto-sp13_S_contig11880.1605.1 vs. uniprot
Match: A0A7S1BE73_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BE73_9STRA)

HSP 1 Score: 129 bits (325), Expect = 3.160e-29
Identity = 98/283 (34.63%), Postives = 144/283 (50.88%), Query Frame = 1
Query:  580 AGEYIDMTVGIAMGISTMAAAALGNTISDVCGVGLGGIIENLATRLGLP-PSKLSRAQMLLRTTRTAGLVGSAIGVLVGCLIGMFPLLFMPDPEVMEAVKRKEK---IVGLVDAVVEEAAAFLSATSATLFIL--------------DREHEILWARRRGAPGTPNAGALQDLKIELAHRGAVSDAARNGEPVIM-------PAGAGGAAP---SMLCMPVYGADGLVAGVVQVVGKKSNGKAL--------DRGFTADDAKDLSALCSHISVALENIKRADE 1320
            AG+ ID+ VG    +STM AAA+GN ISDV GV +G ++E+ A + GL   + LSR QM LR+   A  VG A+G+ +GC+IGM PLLF+       A KRK K   +  +   +  EA  F+ A S TLF++              ++E   LW++         +G LQ+L+I  A +G +   A N E + M         G G       +M+C PV+ + G V  V+    K+  G A          R F  +D + L AL +H+SVAL+N++  D+
Sbjct:  199 AGDAIDLHVGAIFTMSTMCAAAIGNIISDVAGVMMGTVVEDFARKFGLEWETNLSRIQMKLRSVMLAKKVGCAVGITIGCIIGMIPLLFIDG----NAAKRKNKEAAVDRIFKDIASEAKKFIGAESTTLFLVVKGESYNQAVDDNDEKEDYHLWSKYADKA----SGKLQELRIPYA-QGIIGQVAINRETISMHDIRREEDLGIGAVLSDTRNMICCPVFDSKGNVIAVINATNKQDQGSATFSESDSSKPREFLTNDIQALQALGTHVSVALQNLEDMDD 472          
BLAST of mRNA_Ecto-sp13_S_contig11880.1605.1 vs. uniprot
Match: A0A7S4RW45_9DINO (Hypothetical protein n=5 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4RW45_9DINO)

HSP 1 Score: 125 bits (315), Expect = 1.380e-28
Identity = 88/255 (34.51%), Postives = 133/255 (52.16%), Query Frame = 1
Query:  580 AGEYIDMTVGIAMGISTMAAAALGNTISDVCGVGLGGIIENLATRLGLPPSKLSRAQMLLRTTRTAGLVGSAIGVLVGCLIGMFPLLFMPDPEVMEAVKRKEKIVGLVDAVVEEAAAFLSATSATLFILDREHEILWAR-RRGAPGTPNAGALQDLKI--------ELAHRGAVSDAAR----NGEPVIMPAGAGGAAPSMLCMPVYGADGLVAGVVQVVGKKSNGKALDRGFTADDAKDLSALCSHISVALENI 1305
            AG+ ID TVG+ +G+ T+AAAA+G  +SD CGV  GG IE +  +LGLP   L+ AQ  L  T+    +G  IGV+VGC+IGM  LL + D +  E  K+ +++  ++  V+ +  + +S   ATL+I+D+E   LW+    G  G       +D+ I        E+A+   V+   R    NG    +P        SML  PV   DG    V+Q++ K+   +     F ADD K L   C HI++ +E +
Sbjct:  128 AGDAIDNTVGVCLGLPTLAAAAMGQVLSDTCGVTFGGTIEAVCLKLGLPLPGLTDAQQRLGVTKRVSTLGGVIGVIVGCIIGMSNLLLI-DLQASERAKKAKELETIMKTVMADGRSSMSCERATLWIVDKEAGELWSSVATGVDGILRVNYTKDVSIAGWVAQHSEMANVADVTKDPRWRRDNGSSDFVPK-------SMLVGPVV-RDGEAVAVIQLLNKREGERITT--FNADDEKVLQMFCGHIAIFMEQL 371          
BLAST of mRNA_Ecto-sp13_S_contig11880.1605.1 vs. uniprot
Match: A0A7S4SRR6_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4SRR6_9DINO)

HSP 1 Score: 127 bits (320), Expect = 2.800e-28
Identity = 94/260 (36.15%), Postives = 135/260 (51.92%), Query Frame = 1
Query:  583 GEYIDMTVGIAMGISTMAAAALGNTISDVCGVGLGGIIENLATRLGLPPSKLSRAQMLLRTTRTAGLVGSAIGVLVGCLIGMFPLLFMPDPEVMEAVKRKEKIVGLVDAVVEEAAAFLSATSATLFILDREHEILWARRRGAPGTPNAGALQDLKIELAHRGAVSDAAR--NGEPVIMPA--------------GAGGAAPSMLCMPVYGAD------GLVAGVVQVVGKKSNGKALDRGFTADDAKDLSALCSHISVAL 1296
            G+ ID T+ +  G STMAAAALGNT+SD  GV  GG++E++A + G+    LSRAQ  +  T+    +G  IG++VGCLIGMFPLL + D    E +KR+  +  + + VV  AA  LSA +A +  +D +   L+ R      T + G  +  KI     G V+++ R  N   +  P               G G    S+LCMP++  D        + GV++V+ KK         FT  D   L+ALCSHIS +L
Sbjct:  114 GDVIDATLCVTCGFSTMAAAALGNTLSDGVGVFSGGLVEDVARKWGVEAPPLSRAQQTMEVTKRWERLGQLIGIIVGCLIGMFPLLLI-DSHKAELLKRERTLDDMYEHVVTGAAEMLSAEAAMIMFVDGDQRELYTR-----STASVGGFRS-KIGEGIMGRVAESGRFLNIHDIRAPECRGFYSAARHDNYHGTGIVVSSVLCMPIFSYDESSQRADKIVGVLEVINKKDGSN-----FTEKDEDILAALCSHISTSL 361          
BLAST of mRNA_Ecto-sp13_S_contig11880.1605.1 vs. uniprot
Match: A0A5B8MCN9_9CHLO (DUF2453 domain-containing transmembrane protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MCN9_9CHLO)

HSP 1 Score: 125 bits (313), Expect = 3.040e-28
Identity = 89/263 (33.84%), Postives = 140/263 (53.23%), Query Frame = 1
Query:  580 AGEYIDMTVGIAMGISTMAAAALGNTISDVCGVGLGGIIENLATRL--GLPPSKLSRAQMLLRTTRTAGLVGSAIGVLVGCLIGMFPLLFMPDPEVMEAVKRKEKIVGLVDAVVEEAAA-----FLSATSATLFILDREHE-ILWARRRGAPGTPN---------------AGALQDLKIELAHRGAVSDAARNGEPVIMPAGAGGAAPSMLCMPVYGADGLVAGVVQVVGKKSNGKALDRGFTADDAKDLSALCSHISVALE 1299
            AGE+I  ++GI +G++TMAAA LG  +SD+ G+  GG ++ +  +L   LP S L+  Q  L ++R A   G  +GV +GCL+GM  LLF+ D E +E  +   ++  + D VVE++A       L A  + L+++D E +  +W R       P                 G+ +DL  +    G+V  AA +G         GG   +M+ +P+ G+DG + G +Q+V +K +G   ++GFT  DAK L  LC+HIS  LE
Sbjct:  125 AGEHIQSSIGITLGLTTMAAAGLGQVVSDISGIMSGGTVDAVVGKLLPNLPRSGLTSLQKDLSSSRIAQTAGGCVGVTIGCLLGMSVLLFV-DAEAVERQRTAAELERIFD-VVEKSAMDAVDRTLGAEMSILWLVDTEKDNTIWTRVVADGDVPTDLEVKKTDFVSAIKRTGSSRDLVNKTITTGSVQHAALDG---------GGPIKNMMTVPIVGSDGEILGAIQIVNRKDSGGG-EKGFTGQDAKVLKVLCAHISSFLE 375          
BLAST of mRNA_Ecto-sp13_S_contig11880.1605.1 vs. uniprot
Match: A0A7S1QX46_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1QX46_ALECA)

HSP 1 Score: 126 bits (316), Expect = 1.900e-27
Identity = 91/255 (35.69%), Postives = 136/255 (53.33%), Query Frame = 1
Query:  583 GEYIDMTVGIAMGISTMAAAALGNTISDVCGVGLGGIIENLATRLGLPPSKLSRAQMLLRTTRTAGLVGSAIGVLVGCLIGMFPLLFMPDPEVMEAVKRKEKIVGLVDAVVEEAAAFLSATSATLFILDREHEILWARRRGAPGTPNAGALQDLKI--ELAHRGA-VSDAARNGEPVIMPA------GAGGAAPSMLCMPVYGADGLVAGVVQVVGKKSNGKALDRGFTADDAKDLSALCSHISVALENIKRADE 1320
            GE+ID T+ + +  STMAAAA+GNT SDV G+  GG +E LA R+G     L R Q  L  TR     G  +G+++GC++G  PLL++ DP+  E ++R+++   + ++V+ +    L A +  L + + + E L++    +P  PN    +D+     +A  G  V+ A    EP+  P       G+G    S+LCMP++   G V GV+ V  KK  G      FT  D   LSA+CSHISVA    K   E
Sbjct:  116 GEFIDTTLCVMVNFSTMAAAAVGNTFSDVAGIFSGGAVEQLAVRMGFEEPALEREQRQLSVTRAWQYTGQCMGIVLGCILGCCPLLWI-DPKQAERLRREKEREDVFESVIIKVGKILQAEAVALLLFEGDRENLFSAHH-SPNLPNFRWPKDVGFIGHVATTGQFVNIAEIQEEPLYDPLYHDNLLGSGIRVQSILCMPIF-LSGRVHGVIVVFNKKVTGS-----FTHKDEDILSAICSHISVASAESKNTFE 362          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11880.1605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9W0_9PHAE1.980e-15897.61GAF domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YYR0_9STRA3.330e-6148.48GAF domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A2R5GS23_9STRA4.760e-4041.70cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphod... [more]
A0A7S3PD62_9STRA7.220e-3535.36Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S4N214_9STRA2.050e-3034.50Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1BE73_9STRA3.160e-2934.63Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S4RW45_9DINO1.380e-2834.51Hypothetical protein n=5 Tax=Alexandrium monilatum... [more]
A0A7S4SRR6_9DINO2.800e-2836.15Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A5B8MCN9_9CHLO3.040e-2833.84DUF2453 domain-containing transmembrane protein n=... [more]
A0A7S1QX46_ALECA1.900e-2735.69Hypothetical protein n=1 Tax=Alexandrium catenella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11880contigEcto-sp13_S_contig11880:517..4944 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score450.3
Seed ortholog evalue6e-124
Seed eggNOG ortholog2880.D7FGW4
Preferred nameTMEM65
Model size1359
Hectar predicted targeting categoryother localisation
GOsGO:0003205,GO:0003231,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005886,GO:0005911,GO:0007275,GO:0007507,GO:0008016,GO:0008150,GO:0014704,GO:0016020,GO:0019866,GO:0023051,GO:0030054,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044057,GO:0044291,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0048513,GO:0048731,GO:0048856,GO:0050789,GO:0051239,GO:0065007,GO:0071944,GO:0072359,GO:1903522,GO:1903779
Exons5
EggNOG free text desc.regulation of cardiac conduction
EggNOG OGsKOG4619@1,KOG4619@2759
Ec32 ortholog descriptionTransmembrane protein 65
Ec32 orthologEc-11_000890.1
Cds size762
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11880.1605.1prot_Ecto-sp13_S_contig11880.1605.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11880 1114..4944 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462627.3138857-UTR-Ecto-sp13_S_contig11880:516..11131681462627.3138857-UTR-Ecto-sp13_S_contig11880:516..1113Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11880 517..1113 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462627.3275187-CDS-Ecto-sp13_S_contig11880:1113..12591681462627.3275187-CDS-Ecto-sp13_S_contig11880:1113..1259Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11880 1114..1259 +
1681462627.3523283-CDS-Ecto-sp13_S_contig11880:2011..21561681462627.3523283-CDS-Ecto-sp13_S_contig11880:2011..2156Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11880 2012..2156 +
1681462627.3622181-CDS-Ecto-sp13_S_contig11880:3012..31621681462627.3622181-CDS-Ecto-sp13_S_contig11880:3012..3162Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11880 3013..3162 +
1681462627.3770528-CDS-Ecto-sp13_S_contig11880:3659..38561681462627.3770528-CDS-Ecto-sp13_S_contig11880:3659..3856Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11880 3660..3856 +
1681462627.3862298-CDS-Ecto-sp13_S_contig11880:4820..49441681462627.3862298-CDS-Ecto-sp13_S_contig11880:4820..4944Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11880 4821..4944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11880.1605.1

>prot_Ecto-sp13_S_contig11880.1605.1 ID=prot_Ecto-sp13_S_contig11880.1605.1|Name=mRNA_Ecto-sp13_S_contig11880.1605.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=254bp
MTVGIAMGISTMAAAALGNTISDVCGVGLGGIIENLATRLGLPPSKLSRA
QMLLRTTRTAGLVGSAIGVLVGCLIGMFPLLFMPDPEVMEAVKRKEKIVG
LVDAVVEEAAAFLSATSATLFILDREHEILWARRRGAPGTPNAGALQDLK
IELAHRGAVSDAARNGEPVIMPAGAGGAAPSMLCMPVYGADGLVAGVVQV
VGKKSNGKALDRGFTADDAKDLSALCSHISVALENIKRADEADEVKKKIP
YSG*
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mRNA from alignment at Ecto-sp13_S_contig11880:517..4944+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11880.1605.1 ID=mRNA_Ecto-sp13_S_contig11880.1605.1|Name=mRNA_Ecto-sp13_S_contig11880.1605.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4428bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11880:517..4944+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCAGGCAAGTCTAAAGCACCTTCTCAGGCACCGTCAGGCATGAACTAAG GTATCTTCAGCAAGATTTGTCCTCAAGCAAGTCTGAAGCATGTCCGCAGG CACGCCTCAAGTAACAACATGCACCTCAAGCAAGTGCCTTAACTTTTGCT TGGGCTCAATTTTTTTTGCCTGCGGCGCTTTGCCTGAGGCACGCCTTCGG CATGCTTGAGGGGCCAGGGCTTACCAGTAGGCCCATTTTAGCTGTATGCC GTCTGCGGCTGGATGTAACAGCAGTGCAGACAGGTGCACGCAGGTGATCT GCAGGCACACCATTATTGACGAGAGCAGAGCAGCGACGAAGTTTCGAACG GCAGCTCTTATCTTTCGACTTTCGACCCTGCTCTGCCGCGTGTGCAGCCA ATCAATGCGGTTGAACAGCTTTTGGTGTAGAAACTGGAAGAGGGCTTGAG GAGAACAACGAATATGTGGGACGGTTTCTCCAGCATTGGAGAGTTTGGTG ACAAGCATTACGGTCGCAAAGAGCAAAGCAACGAGCCCCGCTGCCCTAGC CCCCCCCCCCCCTCCCATACTTTTCGCAGGCTGGTGAGTACATTGACATG ACGGTGGGAATCGCCATGGGCATATCCACCATGGCCGCGGCGGCTCTCGG TAACACTATCAGCGATGTCTGTGGCGTGGGATTGGGGGGTATCATCGAGA ACTTGGCCACCAGGCTTGGGCTCCCCCCGTCTAAGCTGTCCAGGTGTGCG AGGGATCTGTGCGTTGGTGTCACGGTGCCATCATGAAGTACGGCGTAGGA ATAAGAGGGGGAGCGCTTAGAGTTGGTATCACGGTGTAGAGTATTGCGAA GAGGGGTACGATCGACTCTTGACGGGTGCGCTCCCAACAAGGGTGTCTGT CGTACTACATACGGAGGGGACCGAAAACGCTCGGGAGCGTCCTTGTTTCA CAGCATTCCGTCCATGTCCACAACTCTTGCAACTGTCTTGCATTTCATGA TTGTGGTCAGGGTTTCGTCCTAGAATATCACCCTTGCTCCTCAAAGTTCG AGAGGTGGAAGATACATGACGCACCCACCGTTTCTGGGGTTCATGGGAGT ATAAGCGATGTGGGGACCAAAACCACTTTGACCGCCATACGTGGCTTGCC TGTCTCGCCTGTCCATGGGGTGGTGCAAATTCTGAGGAAACTTTCCCTTC TGGGATGCGCTGTAAATGTATGCGCGTGGAGCCAGCCATACGCTTGCAAC GAGAGATGACGAGCTCCACTTTTAGGCCACCGATTTAGAAGAGAAAGCAA GAGGTGGCTTGGTCCGTTCGCCTTGTTTTTGCAGTCGATAGAGAGCAATC TCGAGACCCTGCCCATAGACTGATAGCCCAAGGAGGAACCTCTGTACGCT CCTTGCTGGACGGAGGCTACGGGGTGCAACCTCCCCTCTCCTGCGCTCTC GCTTGCCCTGGCTCTGACTTCGAACCATCTTGACGTTTTTCGCAGGGCGC AGATGCTGCTGCGAACGACCCGCACAGCTGGGCTGGTCGGGTCTGCCATT GGGGTCCTGGTGGGCTGTCTCATCGGTATGTTCCCGCTGCTCTTCATGCC TGATCCCGAGGTGATGGAAGCCGTCAAGAGAAAAGAAAAGGTGAGGAGGT TGCTTCGCAGGCGGGAGGCTTTGATCGACAAATCTTGCAACGACGAGCAA GACAGCACCGCGTTGTCGCCGCCTCTCGATGTTGTCATCTACTTGGTGCC TGTCGTGCTCTCGTTCTTGCGGGCACGCGCCCTGGGTTATCGGTTAGTGT TTTTTTTACAACGCCGCACCGACAAGACACGCAGGTCATTTCCCGTCCAC GTTCCTTCTGAGGTGCTTGCCCTCTACCAGGCGTAGCTTCAAGTAGTTGT TGCCCAGTTTTTCGTTTCGCTCTTGTGCAGCATGTACGTGGTTTTTGGTA AGTTTGGGTGCGGCCTTGTCTCTCAGCGGGTCGCTCCAAGGTTGTTTCTT CCTGTTTTGCGACGCCGGGCTTCGGTGGGCGATGCTCAATATCGTAGTTC GCTCTCTCCGGAGAGACCCAACAATGGGGCTAAGGAACCCTGTAAACCAA AAGTAGATACGGTCTTGTTGTTTTTGTCAACCTCAGACTGACTGTTCTGC GCACGGTGGTGTTCATGGTCGCATTCGACGTTGCCCACTGCGTTGGTTTT TACCGCTGCTGCTTTGAGGCGGGTAGTAGAAATTAACCATTCATGCCCGC TTGTTCTCAGCTCCTATAGGACCCCCCCTCCCCCCCCCAGATCTCAACAC CACTTACATCCGCTTGAGCTTTCGAGAGCCGAGGCTGCAACCGTCTTGTA GCTTCAATAGCGTTGGATACCCGGTAGCCATAATTTGGCGCAACATCCCA AACGGAGAAGTAGGAGATCTTGAATACCGGAGTGGTGCCGTCGCCGTCCC TTCATTGCTCGTGCTGTGACGCCTCTGCCTCCGACTGTGACGGTAGATTG TAGGGCTTGTCGACGCTGTGGTGGAAGAAGCGGCCGCTTTCCTTTCGGCG ACTAGCGCTACCCTCTTCATCCTGGACAGGGAACACGAGATCTTGTGGGC CAGGAGAAGAGGGGCACCGGGGACTCCTAATGCAGGAGCACTGCAGGTGA GAGTGGGACGAAAAAACAGAGGGTGCTCGTGTCCAATGTGCCGAGAATAT CAGTTTTTTGCCCTTGGATTGGAAGAATGTGCCGTCCTGCCGGTTGGGTG TGGGTTTGCGTGTTCTAGCGGCTGTTGCGGGTTTGTGAGTGGAGAGGCGG TTTCCAGCAGCACAGGGAGCAGCACATGGGAGCGTGTCTTAACTATTGTG AAATTTTCTCTACTCGTGTCGAAGAGTGCGTGCCGAACTGCTGTTGTCGC TCTCACTCGTGAGTGATGAAGAATCTGGCATCGAGGAGGTCAGGTTGCTC ACTGCTGAACCACGATTCCTTTGGAGAAACCCGTCCGAATCATTGCAGAC AATGTGCGGTTGCACACCGTACCCGTGCACCTGACTGCCCACCGTCTCCA TTCTTACAATCGGGTCTACATGTCGTACGATATGGATATTTCATATGTTT CGTCCTTGACCTTTGCCTTTCTGGTCTGATACGTGTCACCCAGGACCTCA AGATCGAGCTTGCGCACCGCGGGGCGGTGTCCGACGCCGCACGCAACGGG GAGCCCGTGATCATGCCGGCCGGGGCGGGGGGCGCGGCACCTTCGATGCT GTGCATGCCTGTCTACGGTGCGGACGGGCTTGTCGCCGGAGTTGTCCAGG TTGTGGGAAAGAAATCGAACGGAAAGGCTCTCGACAGAGGGTGAGAGGGG GGGTTCCATTGCAACCGGGCGCCACGCTGTGATCAAGTTGGAGCTTGAGT TGGTGTCGTGTTTGGCGATGTCCCATCGCTCCGGTCAACGTTTTCGCAGG GGCCGTTCCTCTCTCAGCACCGTGTGTTTTTTTATTGCAGCGTTACGAAG GGGAGCCGGCTTGATATTGGAGCCACCATGGTCGTGGGAAAGACTAATTT AGCGGAGGAAGGGGATGCAGTGGGCCTTCGAGCAAAGGAGGGTTTAGCAA AATGTGCATGCGACGTCTAACACCTTTAACTGCTCCTCTCGACGTCTATG TATGAGTGAAGAGAACGGGCGAGCAAAGGGGTCGCTTCTTAGGGTACCCA AGAAATACACACTGCGATACTTTCTCAATGTTGACCGAAGGCTTTGGTTC AAGCACGCCTGTGCGCACACCGCCTCGAACGTATGCATACCTGCCTCCGG TTTGTGGTTGATCGATCTTTTTGGCAATCCCCCGGTTTCCGTCACCAATT TCTTTTTCGAAGCGTCCGCGCTGCTGGCGTTGTGTTTGTGTTTACTGGTT GCCGTTGTGTGGTCATCTCGACTGCTTCAAGTCATCTGCTCAGCGTCACG GCTGCGGGTGCTAAAAGCCCTGGTGCCTTTTTTCACATCTCTCAAGCTCT CTGAATATAGCGTTGTTCGGATGTGCTTTTTTGACGTTGCCCGTTTTTTC TGTCTTTGCGGCATCAGATTCGTCCTGTTTCATCCATCTGTTATTTTTCA GCTTGATAGCTCAAGCTGCGAAGGAAGTACTGAAAGAAAAGCCCTGCCTG CTGTCCGCGCTCCGCGTTTTCCGTGTTTTTGGGTGTCGCCTGTTCTGGAT TCAACGAATCACGTGTCTTCTGCCGCCCCTTCTTGACACATTTTCCCACA AACCCACGCCATGTGTGGTGTTGTCGTCTGTGTGCGGCGTGACTTGACTC TCAGTTTTACCGCTGACGATGCGAAGGATCTGTCGGCACTCTGCTCGCAC ATCAGCGTAGCCCTGGAAAACATCAAGCGCGCTGACGAAGCCGATGAGGT GAAAAAAAAAATCCCCTATTCCGGATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11880:517..4944+

>mRNA_Ecto-sp13_S_contig11880.1605.1 ID=mRNA_Ecto-sp13_S_contig11880.1605.1|Name=mRNA_Ecto-sp13_S_contig11880.1605.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=762bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11880:517..4944+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGGTGGGAATCGCCATGGGCATATCCACCATGGCCGCGGCGGCTCT
CGGTAACACTATCAGCGATGTCTGTGGCGTGGGATTGGGGGGTATCATCG
AGAACTTGGCCACCAGGCTTGGGCTCCCCCCGTCTAAGCTGTCCAGGGCG
CAGATGCTGCTGCGAACGACCCGCACAGCTGGGCTGGTCGGGTCTGCCAT
TGGGGTCCTGGTGGGCTGTCTCATCGGTATGTTCCCGCTGCTCTTCATGC
CTGATCCCGAGGTGATGGAAGCCGTCAAGAGAAAAGAAAAGATTGTAGGG
CTTGTCGACGCTGTGGTGGAAGAAGCGGCCGCTTTCCTTTCGGCGACTAG
CGCTACCCTCTTCATCCTGGACAGGGAACACGAGATCTTGTGGGCCAGGA
GAAGAGGGGCACCGGGGACTCCTAATGCAGGAGCACTGCAGGACCTCAAG
ATCGAGCTTGCGCACCGCGGGGCGGTGTCCGACGCCGCACGCAACGGGGA
GCCCGTGATCATGCCGGCCGGGGCGGGGGGCGCGGCACCTTCGATGCTGT
GCATGCCTGTCTACGGTGCGGACGGGCTTGTCGCCGGAGTTGTCCAGGTT
GTGGGAAAGAAATCGAACGGAAAGGCTCTCGACAGAGGTTTTACCGCTGA
CGATGCGAAGGATCTGTCGGCACTCTGCTCGCACATCAGCGTAGCCCTGG
AAAACATCAAGCGCGCTGACGAAGCCGATGAGGTGAAAAAAAAAATCCCC
TATTCCGGATAA
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