mRNA_Ecto-sp13_S_contig11879.1603.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11879.1603.1 vs. uniprot
Match: D7FJG9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJG9_ECTSI) HSP 1 Score: 939 bits (2427), Expect = 0.000e+0 Identity = 469/487 (96.30%), Postives = 479/487 (98.36%), Query Frame = 1
Query: 1 LVPDPSPLDPQLRGLWDWLQQRVEQCPSTLPDTVLSELVDTLLTRVQCSATSREEVIPIALALTESFMYQVPSEEMGRCVLRAWCQCVGYGGRARESVLQSVYRILDRSIALPPENPRTAFASAANDRASTGSVGNRGGAARHVRGVASEDWTRQPMSTGGAQGSEDGSQLGKIPPTIVSGGGSSGSSGFATSLNGVSMILGGDEASRWGNAGGGGAGGDPSETPRMKYLRAKSAATRLKRSAFWFLGEYCCQLTGAPAESSQNPDQTPPPAKTGGNELLDVWTSPVPSPTKGGTGRLSAGLGDMGAEASAEAHPVVSGMNGATISILMRLKHAAMFEDFQTRSTCASALCKIALRLPDPIRFDAYCFLQGLADCATLFPLVPSRQDNDPGCSGEGPLEGHWREQEALFERIESAGAYGIREVVTPVLDYLGCLYSMPDSEETRPGSSQDGSLPTERTEVGQRSAMETKLLGVYRRVLDEHGAAPGP 1461
LVPDPSPLDPQLRGLWDWLQQRVEQCPSTLPDTVLSELVDTLLTRVQCSATSREEVIPIALALTESFMYQVPSEEMGRCVLRAWCQC GYGGRARESVLQSVYRILDRSIALPP+NPRTAFASAANDRASTGSVG+RGGAARHVRG+ASEDWTRQP+STGGAQGSEDGSQ G+IPPTIVSGGGSSGSSGFATSLNGVSMILGGDEASRWGNAGGGGAGGDPSETPR+KYLR KSAATRLKRSAFWFLGEYCCQLTGAPAESSQNPDQ+PPPA+TGGNELLDVWTSPVPSPTKGGTGRL AGLGDMGAEASAEAHPVVSGMNGATISILMRLKHAAMFEDFQTRSTCASALCKIALRLPDPIRFDAYCFLQGLAD A LFPLVPSRQDNDPGCSGEG LEGHWREQEALFERIE+AGAYGIREVVTPVLDYLGCLYSMPDSEETRP SSQDGSLPTERTEVGQRSAMETKLLGVYRRVLD+HGAAPGP
Sbjct: 541 LVPDPSPLDPQLRGLWDWLQQRVEQCPSTLPDTVLSELVDTLLTRVQCSATSREEVIPIALALTESFMYQVPSEEMGRCVLRAWCQCAGYGGRARESVLQSVYRILDRSIALPPDNPRTAFASAANDRASTGSVGDRGGAARHVRGMASEDWTRQPISTGGAQGSEDGSQPGRIPPTIVSGGGSSGSSGFATSLNGVSMILGGDEASRWGNAGGGGAGGDPSETPRLKYLRTKSAATRLKRSAFWFLGEYCCQLTGAPAESSQNPDQSPPPAETGGNELLDVWTSPVPSPTKGGTGRLPAGLGDMGAEASAEAHPVVSGMNGATISILMRLKHAAMFEDFQTRSTCASALCKIALRLPDPIRFDAYCFLQGLADSAALFPLVPSRQDNDPGCSGEGLLEGHWREQEALFERIENAGAYGIREVVTPVLDYLGCLYSMPDSEETRPSSSQDGSLPTERTEVGQRSAMETKLLGVYRRVLDQHGAAPGP 1027
BLAST of mRNA_Ecto-sp13_S_contig11879.1603.1 vs. uniprot
Match: A0A6H5KD03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD03_9PHAE) HSP 1 Score: 811 bits (2096), Expect = 3.030e-283 Identity = 415/487 (85.22%), Postives = 422/487 (86.65%), Query Frame = 1
Query: 1 LVPDPSPLDPQLRGLWDWLQQRVEQCPSTLPDTVLSELVDTLLTRVQCSATSREEVIPIALALTESFMYQVPSEEMGRCVLRAWCQCVGYGGRARESVLQSVYRILDRSIALPPENPRTAFASAANDRASTGSVGNRGGAARHVRGVASEDWTRQPMSTGGAQGSEDGSQLGKIPPTIVSGGGSSGSSGFATSLNGVSMILGGDEASRWGNAGGGGAGGDPSETPRMKYLRAKSAATRLKRSAFWFLGEYCCQLTGAPAESSQNPDQTPPPAKTGGNELLDVWTSPVPSPTKGGTGRLSAGLGDMGAEASAEAHPVVSGMNGATISILMRLKHAAMFEDFQTRSTCASALCKIALRLPDPIRFDAYCFLQGLADCATLFPLVPSRQDNDPGCSGEGPLEGHWREQEALFERIESAGAYGIREVVTPVLDYLGCLYSMPDSEETRPGSSQDGSLPTERTEVGQRSAMETKLLGVYRRVLDEHGAAPGP 1461
LVPDPSPLDPQLRGLWDWLQQRVEQCPSTLPDTVLSELVDTLLTRVQCSATSREEVIPIALALTESFMYQVPSEEMGRCVLRAWCQC GYGGRARESVLQSVYRILDRSIALPP+NPR AFASAAN+RASTGSVG+RGGAARHVRG+ASEDWTRQP+STGGAQG DPSETPR+KYLRAKSAATRLKRSAFWFLGEYC QLTGAPAESSQN DQTPPPAKTGGNELLDVWTSPVPSPTKGG GRL AGLGDMGAEASAEAHPVVSGMNGATISILMRLKHAAMFEDFQTRSTCASALCKIALRLPDPIRFDAYCFLQGLAD A LFPLVPSRQDNDPGCSGEG LEGHWREQEALFERIE+AGAYGIREVVTPVLDYLGCLYSMPDSE TRPGSSQDGSLPTERTEVGQRSAMETKLLGVYRRVLDEHGAAPGP
Sbjct: 715 LVPDPSPLDPQLRGLWDWLQQRVEQCPSTLPDTVLSELVDTLLTRVQCSATSREEVIPIALALTESFMYQVPSEEMGRCVLRAWCQCAGYGGRARESVLQSVYRILDRSIALPPDNPRAAFASAANNRASTGSVGDRGGAARHVRGMASEDWTRQPISTGGAQG-------------------------------------------------------DPSETPRLKYLRAKSAATRLKRSAFWFLGEYCRQLTGAPAESSQNHDQTPPPAKTGGNELLDVWTSPVPSPTKGGMGRLPAGLGDMGAEASAEAHPVVSGMNGATISILMRLKHAAMFEDFQTRSTCASALCKIALRLPDPIRFDAYCFLQGLADSAALFPLVPSRQDNDPGCSGEGLLEGHWREQEALFERIENAGAYGIREVVTPVLDYLGCLYSMPDSEGTRPGSSQDGSLPTERTEVGQRSAMETKLLGVYRRVLDEHGAAPGP 1146
BLAST of mRNA_Ecto-sp13_S_contig11879.1603.1 vs. uniprot
Match: A0A835Z8W3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8W3_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 5.580e-18 Identity = 84/240 (35.00%), Postives = 104/240 (43.33%), Query Frame = 1
Query: 652 GGDPSETPRMKYLRAKSAATRLKRSAFWFLGEYCCQLTGAPAESSQNPDQTPPPAKTG---GNELLDVWTSPVPSPTKG------GTGRLSAGLGDMGAEASAEAHPVVSGMNGATISILMRLKHAAMFEDFQTRSTCASALCKIALRLPDPIRFDAYCFLQGLADCATLFPLVPSRQDNDPGCSGEGP---LEGHWREQEALFERIESAGAYGIRE---------VVTPVLDYLGCLYS 1308
GG +E P +A+ AA RL+R A WF+GEYCC+L G P PP T G+ LL + VP P G + MRL+ AA+FED TR SALC +ALRLP+P RFDAY FL+GL C F + D P C G GP L G+ Q A +E A A+G+ V PVL YL LY+
Sbjct: 1253 GGRGAEDPDA-LAQARGAARRLQRLALWFVGEYCCELVGLPPPRRHQ--VVPPLGATPLSPGDALLKLS---VPGPLGSSKDDPCGWQQDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMRLRAAAVFEDAHTRHAAVSALCFVALRLPEPARFDAYLFLRGLVACE--FDIA----DPAPYCGGAGPAGGLRGYVEAQAAACAALEDAPAFGLAXXXXXXXXXXVARPVLAYLDMLYA 1480 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11879.1603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11879.1603.1 >prot_Ecto-sp13_S_contig11879.1603.1 ID=prot_Ecto-sp13_S_contig11879.1603.1|Name=mRNA_Ecto-sp13_S_contig11879.1603.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=421bp MYQVPSEEMGRCVLRAWCQCVGYGGRARESVLQSVYRILDRSIALPPENPback to top mRNA from alignment at Ecto-sp13_S_contig11879:772..4604- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11879.1603.1 ID=mRNA_Ecto-sp13_S_contig11879.1603.1|Name=mRNA_Ecto-sp13_S_contig11879.1603.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3833bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11879:772..4604- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11879:772..4604- >mRNA_Ecto-sp13_S_contig11879.1603.1 ID=mRNA_Ecto-sp13_S_contig11879.1603.1|Name=mRNA_Ecto-sp13_S_contig11879.1603.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1263bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11879:772..4604- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |