mRNA_Ecto-sp13_S_contig11876.1600.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11876.1600.1 vs. uniprot
Match: D7FNA6_ECTSI (Similar to titin isoform N2-B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA6_ECTSI) HSP 1 Score: 304 bits (778), Expect = 1.060e-92 Identity = 157/162 (96.91%), Postives = 159/162 (98.15%), Query Frame = 1
Query: 1 AVPTCPAGIEGCLESSNDTIVPRRVPRSPSMDVPLSIGATSSPNSFTSTSLMVTFAADTADVNSTTSCDETAVTKFKVEWDTTPSFNSMGNKPLSYDADAGTSPEVVDIDARDGSARYNITGLVQGTKYYIRVSALNTLGYGAAADYQDAVPMTSADAPGFP 486
AVPTCPAGIE CLESSNDTIVPRRVPRSPSMDVPLSIGATSSPNSFTSTSL+VTFA D ADVNSTTSCDETAVTKFKVEWDTTPSFNSMGNKPLSYDADAGTSPEVVDIDARDGSARYNITGLVQGTKYYIRVSALNTLGYGAAADYQDAVP+TSADAPGFP
Sbjct: 7701 AVPTCPAGIEDCLESSNDTIVPRRVPRSPSMDVPLSIGATSSPNSFTSTSLIVTFAPDPADVNSTTSCDETAVTKFKVEWDTTPSFNSMGNKPLSYDADAGTSPEVVDIDARDGSARYNITGLVQGTKYYIRVSALNTLGYGAAADYQDAVPITSADAPGFP 7862
BLAST of mRNA_Ecto-sp13_S_contig11876.1600.1 vs. uniprot
Match: A0A6H5JYH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYH1_9PHAE) HSP 1 Score: 299 bits (765), Expect = 5.920e-91 Identity = 154/162 (95.06%), Postives = 157/162 (96.91%), Query Frame = 1
Query: 1 AVPTCPAGIEGCLESSNDTIVPRRVPRSPSMDVPLSIGATSSPNSFTSTSLMVTFAADTADVNSTTSCDETAVTKFKVEWDTTPSFNSMGNKPLSYDADAGTSPEVVDIDARDGSARYNITGLVQGTKYYIRVSALNTLGYGAAADYQDAVPMTSADAPGFP 486
AVPTCPAGIE CLESSNDTIVPRRVPRSPSMDVPLSIGATSSPNSFTSTSLMVTFAAD DVNSTTSCDETAVTKFKVEWDTTPSFNSMGNKPLSYDADAGTSPEVVDID RDGSARYNITGLVQGT+ Y+RVSALNTLGYGAAADYQDAVP+TSADAPGFP
Sbjct: 341 AVPTCPAGIEDCLESSNDTIVPRRVPRSPSMDVPLSIGATSSPNSFTSTSLMVTFAADPTDVNSTTSCDETAVTKFKVEWDTTPSFNSMGNKPLSYDADAGTSPEVVDIDPRDGSARYNITGLVQGTQIYVRVSALNTLGYGAAADYQDAVPITSADAPGFP 502
BLAST of mRNA_Ecto-sp13_S_contig11876.1600.1 vs. uniprot
Match: A0A5A8DYP9_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DYP9_CAFRO) HSP 1 Score: 75.1 bits (183), Expect = 1.110e-12 Identity = 62/166 (37.35%), Postives = 86/166 (51.81%), Query Frame = 1
Query: 1 AVPTCPAGIEGCLESSNDTIVPRRVPRSPSMDVPLSIGATSSPNSFTSTSLMVTFA-ADTADVNSTTSCDETAVTKFKVEWDTTPSFNSMGNK-PLSYDADA--GTSPEVVD-IDARDGSARYNITGLVQGTKYYIRVSALNTLGYGAAADYQDAVPMTSADAPGF 483
A P C +E C S VPR +P +P+ V IGA +S N F+++ L V+F VN+T K+K+EWDT+P F+S N LS++A GTSPEV + + G Y I GL G Y++RV+A N+LGYG A + + AP F
Sbjct: 7500 ATPVCEPDLEDCTPLS----VPRALPGAPADVV---IGAPTSANPFSASFLQVSFRPGKLGGVNNT---------KYKIEWDTSPVFDSGANGGALSFEAHGFTGTSPEVPEHAEGSSGELFYRIFGLDMGVVYFVRVTAANSLGYGGVAGPLASKTLEPVSAPRF 7649
BLAST of mRNA_Ecto-sp13_S_contig11876.1600.1 vs. uniprot
Match: A0A5A8CWJ7_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CWJ7_CAFRO) HSP 1 Score: 75.1 bits (183), Expect = 1.110e-12 Identity = 62/166 (37.35%), Postives = 86/166 (51.81%), Query Frame = 1
Query: 1 AVPTCPAGIEGCLESSNDTIVPRRVPRSPSMDVPLSIGATSSPNSFTSTSLMVTFA-ADTADVNSTTSCDETAVTKFKVEWDTTPSFNSMGNK-PLSYDADA--GTSPEVVD-IDARDGSARYNITGLVQGTKYYIRVSALNTLGYGAAADYQDAVPMTSADAPGF 483
A P C +E C S VPR +P +P+ V IGA +S N F+++ L V+F VN+T K+K+EWDT+P F+S N LS++A GTSPEV + + G Y I GL G Y++RV+A N+LGYG A + + AP F
Sbjct: 7692 ATPVCEPDLEDCTPLS----VPRALPGAPADVV---IGAPTSANPFSASFLQVSFRPGKLGGVNNT---------KYKIEWDTSPVFDSGANGGALSFEAHGFTGTSPEVPEHAEGSSGELFYRIFGLDMGVVYFVRVTAANSLGYGGVAGPLASKTLEPVSAPRF 7841
BLAST of mRNA_Ecto-sp13_S_contig11876.1600.1 vs. uniprot
Match: A0A5A8EGP9_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EGP9_CAFRO) HSP 1 Score: 75.1 bits (183), Expect = 1.110e-12 Identity = 62/166 (37.35%), Postives = 86/166 (51.81%), Query Frame = 1
Query: 1 AVPTCPAGIEGCLESSNDTIVPRRVPRSPSMDVPLSIGATSSPNSFTSTSLMVTFA-ADTADVNSTTSCDETAVTKFKVEWDTTPSFNSMGNK-PLSYDADA--GTSPEVVD-IDARDGSARYNITGLVQGTKYYIRVSALNTLGYGAAADYQDAVPMTSADAPGF 483
A P C +E C S VPR +P +P+ V IGA +S N F+++ L V+F VN+T K+K+EWDT+P F+S N LS++A GTSPEV + + G Y I GL G Y++RV+A N+LGYG A + + AP F
Sbjct: 7686 ATPVCEPDLEDCTPLS----VPRALPGAPADVV---IGAPTSANPFSASFLQVSFRPGKLGGVNNT---------KYKIEWDTSPVFDSGANGGALSFEAHGFTGTSPEVPEHAEGSSGELFYRIFGLDMGVVYFVRVTAANSLGYGGVAGPLASKTLEPVSAPRF 7835
BLAST of mRNA_Ecto-sp13_S_contig11876.1600.1 vs. uniprot
Match: A0A5A8DTS9_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DTS9_CAFRO) HSP 1 Score: 75.1 bits (183), Expect = 1.110e-12 Identity = 62/166 (37.35%), Postives = 86/166 (51.81%), Query Frame = 1
Query: 1 AVPTCPAGIEGCLESSNDTIVPRRVPRSPSMDVPLSIGATSSPNSFTSTSLMVTFA-ADTADVNSTTSCDETAVTKFKVEWDTTPSFNSMGNK-PLSYDADA--GTSPEVVD-IDARDGSARYNITGLVQGTKYYIRVSALNTLGYGAAADYQDAVPMTSADAPGF 483
A P C +E C S VPR +P +P+ V IGA +S N F+++ L V+F VN+T K+K+EWDT+P F+S N LS++A GTSPEV + + G Y I GL G Y++RV+A N+LGYG A + + AP F
Sbjct: 7699 ATPVCEPDLEDCTPLS----VPRALPGAPADVV---IGAPTSANPFSASFLQVSFRPGKLGGVNNT---------KYKIEWDTSPVFDSGANGGALSFEAHGFTGTSPEVPEHAEGSSGELFYRIFGLDMGVVYFVRVTAANSLGYGGVAGPLASKTLEPVSAPRF 7848
BLAST of mRNA_Ecto-sp13_S_contig11876.1600.1 vs. uniprot
Match: A0A2R5GG89_9STRA (Receptor-type tyrosine-protein phosphatase F n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GG89_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 1.110e-12 Identity = 60/166 (36.14%), Postives = 85/166 (51.20%), Query Frame = 1
Query: 13 CPAGIEGCLESSNDTIVPRRVPRSPSMDVPLSIGATSSPNSFTSTSLMVTFAADTADVNSTTSCDETAVTKFKVEWDTTPSFNSMGNKPLSYDADAGTSPEVVDIDARDGSA-----------RYNITGLVQGTKYYIRVSALNTLGYGAAADYQDAVPMTSADAP 477
C G+E C S I+ R +P + +V LS A + NSF+ +SL +T+ + + + T+++VEWD +PSF S+ KPLS+ G+S D D DGS +TGL GT YY RV+ N+LGYG A+ AVPM + DAP
Sbjct: 7410 CETGLEACEASQ---ILTRALPEVVA-NVALSNEAFNGQNSFSDSSLTITWESGSV-------ANNIPNTRYRVEWDISPSFASVDGKPLSF----GSSNS--DGDGMDGSPYRDEATPGDELSLTVTGLQAGTTYYFRVTPRNSLGYGTASVVHSAVPMRAPDAP 7558
BLAST of mRNA_Ecto-sp13_S_contig11876.1600.1 vs. uniprot
Match: A0A7S1CMY1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CMY1_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 1.170e-11 Identity = 56/139 (40.29%), Postives = 77/139 (55.40%), Query Frame = 1
Query: 25 IEGCLESSNDTIVPRRVPRSPSMDVPLSIGATSSPNSFTSTSLMVTFAADTADVNSTTSCDETAVTKFKVEWDTTPSFNSMGNKPLSYDADAGT--SPEVVD----IDARDGSARYNITGLVQGTKYYIRVSALNTLGY 423
IE C+ IVPR +P P+ ++ LS T N FT+ SL VT+ A T ++ K+KVEWDT +F+SM +P+SY+ D T SPEV + ++ +T LVQGT YY+RV+A NTLGY
Sbjct: 1 IEDCVA----LIVPRALPGDPA-NIVLSTPGTK--NFFTNYSLTVTWEAGTLGAPGYSN------DKYKVEWDTKATFDSMDGRPMSYEEDGFTLTSPEVAEENPPVELSYTIGPPLVTPLVQGTLYYVRVTAHNTLGY 126
BLAST of mRNA_Ecto-sp13_S_contig11876.1600.1 vs. uniprot
Match: A0A8J2SQT3_9STRA (Hypothetical protein n=13 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SQT3_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 5.200e-6 Identity = 34/81 (41.98%), Postives = 46/81 (56.79%), Query Frame = 1
Query: 214 AVTKFKVEWDTTPSFNSMGNKPLSYDADAGTSPEVVDIDARDGSARYNITGLVQGTKYYIRVSALNTLGYGAAADYQDAVP 456
++T ++VEWDT+ SFNS+ P GT VD+DA + Y I L T YY++VSA+N GYGAA+ A P
Sbjct: 18549 SITAYRVEWDTSSSFNSLSASPHK-----GT----VDVDATVALS-YTIDELSPSTTYYVKVSAINAAGYGAASATLSAAP 18619
BLAST of mRNA_Ecto-sp13_S_contig11876.1600.1 vs. uniprot
Match: T0S6T2_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S6T2_SAPDV) HSP 1 Score: 54.3 bits (129), Expect = 1.760e-5 Identity = 35/89 (39.33%), Postives = 46/89 (51.69%), Query Frame = 1
Query: 214 AVTKFKVEWDTTPSFNS-MGNKPLSYDADAGTSPEVVDIDARDGSARYNITGLVQGTKYYIRVSALNTLGYGAAADYQDAVPMTSADAP 477
A+TK+++EWDT+P F S + L YD + P V D + I LV+GT YY+RV A N GY A VPM +A P
Sbjct: 6256 AITKYRIEWDTSPMFTSGVDGGALGYDMSSVVLPGV---DCLLSPCQMGIGNLVKGTPYYVRVYAYNAYGYSDNAG----VPMPAATVP 6337 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11876.1600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11876.1600.1 >prot_Ecto-sp13_S_contig11876.1600.1 ID=prot_Ecto-sp13_S_contig11876.1600.1|Name=mRNA_Ecto-sp13_S_contig11876.1600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=162bp AVPTCPAGIEGCLESSNDTIVPRRVPRSPSMDVPLSIGATSSPNSFTSTSback to top mRNA from alignment at Ecto-sp13_S_contig11876:65..550+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11876.1600.1 ID=mRNA_Ecto-sp13_S_contig11876.1600.1|Name=mRNA_Ecto-sp13_S_contig11876.1600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=486bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11876:65..550+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11876:65..550+ >mRNA_Ecto-sp13_S_contig11876.1600.1 ID=mRNA_Ecto-sp13_S_contig11876.1600.1|Name=mRNA_Ecto-sp13_S_contig11876.1600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11876:65..550+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |