mRNA_Ecto-sp13_S_contig11876.1600.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11876.1600.1
Unique NamemRNA_Ecto-sp13_S_contig11876.1600.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11876.1600.1 vs. uniprot
Match: D7FNA6_ECTSI (Similar to titin isoform N2-B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA6_ECTSI)

HSP 1 Score: 304 bits (778), Expect = 1.060e-92
Identity = 157/162 (96.91%), Postives = 159/162 (98.15%), Query Frame = 1
Query:    1 AVPTCPAGIEGCLESSNDTIVPRRVPRSPSMDVPLSIGATSSPNSFTSTSLMVTFAADTADVNSTTSCDETAVTKFKVEWDTTPSFNSMGNKPLSYDADAGTSPEVVDIDARDGSARYNITGLVQGTKYYIRVSALNTLGYGAAADYQDAVPMTSADAPGFP 486
            AVPTCPAGIE CLESSNDTIVPRRVPRSPSMDVPLSIGATSSPNSFTSTSL+VTFA D ADVNSTTSCDETAVTKFKVEWDTTPSFNSMGNKPLSYDADAGTSPEVVDIDARDGSARYNITGLVQGTKYYIRVSALNTLGYGAAADYQDAVP+TSADAPGFP
Sbjct: 7701 AVPTCPAGIEDCLESSNDTIVPRRVPRSPSMDVPLSIGATSSPNSFTSTSLIVTFAPDPADVNSTTSCDETAVTKFKVEWDTTPSFNSMGNKPLSYDADAGTSPEVVDIDARDGSARYNITGLVQGTKYYIRVSALNTLGYGAAADYQDAVPITSADAPGFP 7862          
BLAST of mRNA_Ecto-sp13_S_contig11876.1600.1 vs. uniprot
Match: A0A6H5JYH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYH1_9PHAE)

HSP 1 Score: 299 bits (765), Expect = 5.920e-91
Identity = 154/162 (95.06%), Postives = 157/162 (96.91%), Query Frame = 1
Query:    1 AVPTCPAGIEGCLESSNDTIVPRRVPRSPSMDVPLSIGATSSPNSFTSTSLMVTFAADTADVNSTTSCDETAVTKFKVEWDTTPSFNSMGNKPLSYDADAGTSPEVVDIDARDGSARYNITGLVQGTKYYIRVSALNTLGYGAAADYQDAVPMTSADAPGFP 486
            AVPTCPAGIE CLESSNDTIVPRRVPRSPSMDVPLSIGATSSPNSFTSTSLMVTFAAD  DVNSTTSCDETAVTKFKVEWDTTPSFNSMGNKPLSYDADAGTSPEVVDID RDGSARYNITGLVQGT+ Y+RVSALNTLGYGAAADYQDAVP+TSADAPGFP
Sbjct:  341 AVPTCPAGIEDCLESSNDTIVPRRVPRSPSMDVPLSIGATSSPNSFTSTSLMVTFAADPTDVNSTTSCDETAVTKFKVEWDTTPSFNSMGNKPLSYDADAGTSPEVVDIDPRDGSARYNITGLVQGTQIYVRVSALNTLGYGAAADYQDAVPITSADAPGFP 502          
BLAST of mRNA_Ecto-sp13_S_contig11876.1600.1 vs. uniprot
Match: A0A5A8DYP9_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DYP9_CAFRO)

HSP 1 Score: 75.1 bits (183), Expect = 1.110e-12
Identity = 62/166 (37.35%), Postives = 86/166 (51.81%), Query Frame = 1
Query:    1 AVPTCPAGIEGCLESSNDTIVPRRVPRSPSMDVPLSIGATSSPNSFTSTSLMVTFA-ADTADVNSTTSCDETAVTKFKVEWDTTPSFNSMGNK-PLSYDADA--GTSPEVVD-IDARDGSARYNITGLVQGTKYYIRVSALNTLGYGAAADYQDAVPMTSADAPGF 483
            A P C   +E C   S    VPR +P +P+  V   IGA +S N F+++ L V+F       VN+T         K+K+EWDT+P F+S  N   LS++A    GTSPEV +  +   G   Y I GL  G  Y++RV+A N+LGYG  A    +  +    AP F
Sbjct: 7500 ATPVCEPDLEDCTPLS----VPRALPGAPADVV---IGAPTSANPFSASFLQVSFRPGKLGGVNNT---------KYKIEWDTSPVFDSGANGGALSFEAHGFTGTSPEVPEHAEGSSGELFYRIFGLDMGVVYFVRVTAANSLGYGGVAGPLASKTLEPVSAPRF 7649          
BLAST of mRNA_Ecto-sp13_S_contig11876.1600.1 vs. uniprot
Match: A0A5A8CWJ7_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CWJ7_CAFRO)

HSP 1 Score: 75.1 bits (183), Expect = 1.110e-12
Identity = 62/166 (37.35%), Postives = 86/166 (51.81%), Query Frame = 1
Query:    1 AVPTCPAGIEGCLESSNDTIVPRRVPRSPSMDVPLSIGATSSPNSFTSTSLMVTFA-ADTADVNSTTSCDETAVTKFKVEWDTTPSFNSMGNK-PLSYDADA--GTSPEVVD-IDARDGSARYNITGLVQGTKYYIRVSALNTLGYGAAADYQDAVPMTSADAPGF 483
            A P C   +E C   S    VPR +P +P+  V   IGA +S N F+++ L V+F       VN+T         K+K+EWDT+P F+S  N   LS++A    GTSPEV +  +   G   Y I GL  G  Y++RV+A N+LGYG  A    +  +    AP F
Sbjct: 7692 ATPVCEPDLEDCTPLS----VPRALPGAPADVV---IGAPTSANPFSASFLQVSFRPGKLGGVNNT---------KYKIEWDTSPVFDSGANGGALSFEAHGFTGTSPEVPEHAEGSSGELFYRIFGLDMGVVYFVRVTAANSLGYGGVAGPLASKTLEPVSAPRF 7841          
BLAST of mRNA_Ecto-sp13_S_contig11876.1600.1 vs. uniprot
Match: A0A5A8EGP9_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EGP9_CAFRO)

HSP 1 Score: 75.1 bits (183), Expect = 1.110e-12
Identity = 62/166 (37.35%), Postives = 86/166 (51.81%), Query Frame = 1
Query:    1 AVPTCPAGIEGCLESSNDTIVPRRVPRSPSMDVPLSIGATSSPNSFTSTSLMVTFA-ADTADVNSTTSCDETAVTKFKVEWDTTPSFNSMGNK-PLSYDADA--GTSPEVVD-IDARDGSARYNITGLVQGTKYYIRVSALNTLGYGAAADYQDAVPMTSADAPGF 483
            A P C   +E C   S    VPR +P +P+  V   IGA +S N F+++ L V+F       VN+T         K+K+EWDT+P F+S  N   LS++A    GTSPEV +  +   G   Y I GL  G  Y++RV+A N+LGYG  A    +  +    AP F
Sbjct: 7686 ATPVCEPDLEDCTPLS----VPRALPGAPADVV---IGAPTSANPFSASFLQVSFRPGKLGGVNNT---------KYKIEWDTSPVFDSGANGGALSFEAHGFTGTSPEVPEHAEGSSGELFYRIFGLDMGVVYFVRVTAANSLGYGGVAGPLASKTLEPVSAPRF 7835          
BLAST of mRNA_Ecto-sp13_S_contig11876.1600.1 vs. uniprot
Match: A0A5A8DTS9_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DTS9_CAFRO)

HSP 1 Score: 75.1 bits (183), Expect = 1.110e-12
Identity = 62/166 (37.35%), Postives = 86/166 (51.81%), Query Frame = 1
Query:    1 AVPTCPAGIEGCLESSNDTIVPRRVPRSPSMDVPLSIGATSSPNSFTSTSLMVTFA-ADTADVNSTTSCDETAVTKFKVEWDTTPSFNSMGNK-PLSYDADA--GTSPEVVD-IDARDGSARYNITGLVQGTKYYIRVSALNTLGYGAAADYQDAVPMTSADAPGF 483
            A P C   +E C   S    VPR +P +P+  V   IGA +S N F+++ L V+F       VN+T         K+K+EWDT+P F+S  N   LS++A    GTSPEV +  +   G   Y I GL  G  Y++RV+A N+LGYG  A    +  +    AP F
Sbjct: 7699 ATPVCEPDLEDCTPLS----VPRALPGAPADVV---IGAPTSANPFSASFLQVSFRPGKLGGVNNT---------KYKIEWDTSPVFDSGANGGALSFEAHGFTGTSPEVPEHAEGSSGELFYRIFGLDMGVVYFVRVTAANSLGYGGVAGPLASKTLEPVSAPRF 7848          
BLAST of mRNA_Ecto-sp13_S_contig11876.1600.1 vs. uniprot
Match: A0A2R5GG89_9STRA (Receptor-type tyrosine-protein phosphatase F n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GG89_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.110e-12
Identity = 60/166 (36.14%), Postives = 85/166 (51.20%), Query Frame = 1
Query:   13 CPAGIEGCLESSNDTIVPRRVPRSPSMDVPLSIGATSSPNSFTSTSLMVTFAADTADVNSTTSCDETAVTKFKVEWDTTPSFNSMGNKPLSYDADAGTSPEVVDIDARDGSA-----------RYNITGLVQGTKYYIRVSALNTLGYGAAADYQDAVPMTSADAP 477
            C  G+E C  S    I+ R +P   + +V LS  A +  NSF+ +SL +T+ + +         +    T+++VEWD +PSF S+  KPLS+    G+S    D D  DGS               +TGL  GT YY RV+  N+LGYG A+    AVPM + DAP
Sbjct: 7410 CETGLEACEASQ---ILTRALPEVVA-NVALSNEAFNGQNSFSDSSLTITWESGSV-------ANNIPNTRYRVEWDISPSFASVDGKPLSF----GSSNS--DGDGMDGSPYRDEATPGDELSLTVTGLQAGTTYYFRVTPRNSLGYGTASVVHSAVPMRAPDAP 7558          
BLAST of mRNA_Ecto-sp13_S_contig11876.1600.1 vs. uniprot
Match: A0A7S1CMY1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CMY1_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.170e-11
Identity = 56/139 (40.29%), Postives = 77/139 (55.40%), Query Frame = 1
Query:   25 IEGCLESSNDTIVPRRVPRSPSMDVPLSIGATSSPNSFTSTSLMVTFAADTADVNSTTSCDETAVTKFKVEWDTTPSFNSMGNKPLSYDADAGT--SPEVVD----IDARDGSARYNITGLVQGTKYYIRVSALNTLGY 423
            IE C+      IVPR +P  P+ ++ LS   T   N FT+ SL VT+ A T      ++       K+KVEWDT  +F+SM  +P+SY+ D  T  SPEV +    ++         +T LVQGT YY+RV+A NTLGY
Sbjct:    1 IEDCVA----LIVPRALPGDPA-NIVLSTPGTK--NFFTNYSLTVTWEAGTLGAPGYSN------DKYKVEWDTKATFDSMDGRPMSYEEDGFTLTSPEVAEENPPVELSYTIGPPLVTPLVQGTLYYVRVTAHNTLGY 126          
BLAST of mRNA_Ecto-sp13_S_contig11876.1600.1 vs. uniprot
Match: A0A8J2SQT3_9STRA (Hypothetical protein n=13 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SQT3_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 5.200e-6
Identity = 34/81 (41.98%), Postives = 46/81 (56.79%), Query Frame = 1
Query:  214 AVTKFKVEWDTTPSFNSMGNKPLSYDADAGTSPEVVDIDARDGSARYNITGLVQGTKYYIRVSALNTLGYGAAADYQDAVP 456
            ++T ++VEWDT+ SFNS+   P       GT    VD+DA    + Y I  L   T YY++VSA+N  GYGAA+    A P
Sbjct: 18549 SITAYRVEWDTSSSFNSLSASPHK-----GT----VDVDATVALS-YTIDELSPSTTYYVKVSAINAAGYGAASATLSAAP 18619          
BLAST of mRNA_Ecto-sp13_S_contig11876.1600.1 vs. uniprot
Match: T0S6T2_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S6T2_SAPDV)

HSP 1 Score: 54.3 bits (129), Expect = 1.760e-5
Identity = 35/89 (39.33%), Postives = 46/89 (51.69%), Query Frame = 1
Query:  214 AVTKFKVEWDTTPSFNS-MGNKPLSYDADAGTSPEVVDIDARDGSARYNITGLVQGTKYYIRVSALNTLGYGAAADYQDAVPMTSADAP 477
            A+TK+++EWDT+P F S +    L YD  +   P V   D      +  I  LV+GT YY+RV A N  GY   A     VPM +A  P
Sbjct: 6256 AITKYRIEWDTSPMFTSGVDGGALGYDMSSVVLPGV---DCLLSPCQMGIGNLVKGTPYYVRVYAYNAYGYSDNAG----VPMPAATVP 6337          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11876.1600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FNA6_ECTSI1.060e-9296.91Similar to titin isoform N2-B n=1 Tax=Ectocarpus s... [more]
A0A6H5JYH1_9PHAE5.920e-9195.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5A8DYP9_CAFRO1.110e-1237.35Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8CWJ7_CAFRO1.110e-1237.35Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8EGP9_CAFRO1.110e-1237.35Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8DTS9_CAFRO1.110e-1237.35Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A2R5GG89_9STRA1.110e-1236.14Receptor-type tyrosine-protein phosphatase F n=1 T... [more]
A0A7S1CMY1_9STRA1.170e-1140.29Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A8J2SQT3_9STRA5.200e-641.98Hypothetical protein n=13 Tax=Pelagomonas calceola... [more]
T0S6T2_SAPDV1.760e-539.33Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11876contigEcto-sp13_S_contig11876:65..550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score306.2
Seed ortholog evalue9e-81
Seed eggNOG ortholog2880.D7FNA6
Model size486
KEGG koko:K12567
KEGG Pathwayko05410,ko05414,map05410,map05414
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.cytoskeletal protein binding
EggNOG OGsKOG0613@1,KOG0613@2759
EC2.7.11.1
Cds size486
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04131,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462626.702766-CDS-Ecto-sp13_S_contig11876:64..5501681462626.702766-CDS-Ecto-sp13_S_contig11876:64..550Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11876 65..550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11876.1600.1prot_Ecto-sp13_S_contig11876.1600.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11876 65..550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11876.1600.1

>prot_Ecto-sp13_S_contig11876.1600.1 ID=prot_Ecto-sp13_S_contig11876.1600.1|Name=mRNA_Ecto-sp13_S_contig11876.1600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=162bp
AVPTCPAGIEGCLESSNDTIVPRRVPRSPSMDVPLSIGATSSPNSFTSTS
LMVTFAADTADVNSTTSCDETAVTKFKVEWDTTPSFNSMGNKPLSYDADA
GTSPEVVDIDARDGSARYNITGLVQGTKYYIRVSALNTLGYGAAADYQDA
VPMTSADAPGFP
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mRNA from alignment at Ecto-sp13_S_contig11876:65..550+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11876.1600.1 ID=mRNA_Ecto-sp13_S_contig11876.1600.1|Name=mRNA_Ecto-sp13_S_contig11876.1600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=486bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11876:65..550+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGTCCCGACCTGTCCAGCCGGCATCGAGGGCTGCCTCGAGAGCAGCAA CGACACCATCGTACCTCGGAGGGTCCCCCGTTCCCCCAGCATGGACGTGC CGCTATCCATCGGTGCGACAAGCTCTCCCAACTCCTTCACCTCGACCTCG CTCATGGTGACCTTCGCCGCCGACACCGCGGACGTCAACTCCACCACCTC GTGCGACGAAACCGCCGTCACCAAGTTCAAGGTCGAGTGGGACACGACTC CCAGCTTCAACAGCATGGGAAACAAGCCCCTCTCTTACGACGCAGACGCG GGAACCAGCCCCGAAGTCGTCGACATCGACGCTCGTGACGGAAGCGCGCG GTACAACATTACCGGGTTGGTCCAGGGCACCAAGTACTACATCCGCGTTT CGGCGCTGAACACCCTTGGGTACGGCGCGGCAGCGGACTACCAGGACGCC GTTCCAATGACCTCGGCCGACGCGCCCGGTTTCCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11876:65..550+

>mRNA_Ecto-sp13_S_contig11876.1600.1 ID=mRNA_Ecto-sp13_S_contig11876.1600.1|Name=mRNA_Ecto-sp13_S_contig11876.1600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11876:65..550+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGTCCCGACCTGTCCAGCCGGCATCGAGGGCTGCCTCGAGAGCAGCAA
CGACACCATCGTACCTCGGAGGGTCCCCCGTTCCCCCAGCATGGACGTGC
CGCTATCCATCGGTGCGACAAGCTCTCCCAACTCCTTCACCTCGACCTCG
CTCATGGTGACCTTCGCCGCCGACACCGCGGACGTCAACTCCACCACCTC
GTGCGACGAAACCGCCGTCACCAAGTTCAAGGTCGAGTGGGACACGACTC
CCAGCTTCAACAGCATGGGAAACAAGCCCCTCTCTTACGACGCAGACGCG
GGAACCAGCCCCGAAGTCGTCGACATCGACGCTCGTGACGGAAGCGCGCG
GTACAACATTACCGGGTTGGTCCAGGGCACCAAGTACTACATCCGCGTTT
CGGCGCTGAACACCCTTGGGTACGGCGCGGCAGCGGACTACCAGGACGCC
GTTCCAATGACCTCGGCCGACGCGCCCGGTTTCCCG
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