mRNA_Ecto-sp13_S_contig11875.1599.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11875.1599.1 vs. uniprot
Match: D7FP63_ECTSI (PsbB mRNA maturation factor Mbb1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP63_ECTSI) HSP 1 Score: 371 bits (953), Expect = 7.750e-119 Identity = 188/195 (96.41%), Postives = 191/195 (97.95%), Query Frame = 1
Query: 1 IVPQKSPSAGSAAASNKTELSAKVEAELFEEYDAMVPGPAASAVGNNAGGDITGQERTGRPLKINLDLLSYQAKQKNIKGDYREARRLYRTCVELDPRDGRGWLGLARQMQKIHKYDKAQRLFEAGLENCADNPYLLQAFAVMEEQRGNQAKALTLLNRSVRMHPEHTASWVALGLLNERNKRIDEARGCFQTAT 585
I+ QKSP AGSAAASNKTELSAKVEAELFEEYDAMVPGPAASAVGNNAGGD GQERTGRPLKINLDLLSYQAKQKN+KG+YREARRLYRTCVELDPRDGRGWLGLARQMQKIHKYDKAQRLFEAGLENCADNPYLLQAFAVMEEQRGNQAKALTLLNRSVRMHPEHTASWVALGLLNERNKRIDEARGCFQTAT
Sbjct: 279 ILSQKSPPAGSAAASNKTELSAKVEAELFEEYDAMVPGPAASAVGNNAGGDGAGQERTGRPLKINLDLLSYQAKQKNMKGNYREARRLYRTCVELDPRDGRGWLGLARQMQKIHKYDKAQRLFEAGLENCADNPYLLQAFAVMEEQRGNQAKALTLLNRSVRMHPEHTASWVALGLLNERNKRIDEARGCFQTAT 473
BLAST of mRNA_Ecto-sp13_S_contig11875.1599.1 vs. uniprot
Match: A0A7S4DG14_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DG14_HETAK) HSP 1 Score: 144 bits (364), Expect = 2.900e-36 Identity = 80/179 (44.69%), Postives = 105/179 (58.66%), Query Frame = 1
Query: 46 NKTELSAKVEAELFEEYDAMVPGPAASAVGNNAGGDITGQERTGRPLKINLDLLSYQAKQKNIKGDYREARRLYRTCVELDPRDGRGWLGLARQMQKIHKYDKAQRLFEAGLENCADNPYLLQAFAVMEEQRGNQAKALTLLNRSVRMHPEHTASWVALGLLNERNKRIDEARGCFQTA 582
N T LS KV +EL YD VPGP S + R L INLDL++Y A+Q IKGD R+Y+ C+ELDPRDGR WL LAR + +++ A++LF GL NPYLLQA+ VMEEQRGN KAL L +++ P+H AS+VA L + ++ EAR ++A
Sbjct: 114 NSTTLSKKVYSELMSTYDEQVPGPDPS-------------KPPARALPINLDLMTYHARQAMIKGDEAVGLRIYKKCLELDPRDGRAWLALARHESRRKRFEVAEKLFLKGLTYSRGNPYLLQAYGVMEEQRGNSVKALELYSKATLADPKHAASYVAKAKLLQGVGKVQEARRALKSA 279
BLAST of mRNA_Ecto-sp13_S_contig11875.1599.1 vs. uniprot
Match: A0A835Z1N5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1N5_9STRA) HSP 1 Score: 134 bits (337), Expect = 5.120e-32 Identity = 75/128 (58.59%), Postives = 85/128 (66.41%), Query Frame = 1
Query: 52 TELSAKVEAELFEEYDAMVPGPAASAVGNNAGGDITGQERTGRPLKINLDLLSYQAKQKNIKGDYREARRLYRTCVELDPRDGRGWLGLARQMQKIHKYDKAQRLFEAGLENCADNPYLLQAFAVMEE 435
TELS KVEAEL +YD +VPGP + GQ RPL INLDLLSY+AKQ I GD EA RLY+ CVELDPRDGRGW+GLAR K +A+ L+E GL N DNPYLLQA+ VMEE
Sbjct: 1 TELSLKVEAELLGQYDELVPGP------------MPGQRA--RPLPINLDLLSYKAKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQGNSARARALWETGLSNSPDNPYLLQAYGVMEE 114
BLAST of mRNA_Ecto-sp13_S_contig11875.1599.1 vs. uniprot
Match: A0A7S3B3F3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B3F3_9EUKA) HSP 1 Score: 122 bits (306), Expect = 1.440e-29 Identity = 59/140 (42.14%), Postives = 93/140 (66.43%), Query Frame = 1
Query: 163 QERTGRPLKINLDLLSYQAKQKNIKGDYREARRLYRTCVELDPRDGRGWLGLARQMQKIHKYDKAQRLFEAGLENCADNPYLLQAFAVMEEQRGNQAKALTLLNRSVRMHPEHTASWVALGLLNERNKRIDEARGCFQTA 582
+E RPL+INLDLL+++A+ +GD + A Y+ C++L+P+DGR WLGL++ ++ + ++A RL + GL NPYLLQA+ ++E+RG Q +AL +R+V+ P H ASWVA GLL + +R+D + C + A
Sbjct: 60 KEEGSRPLRINLDLLTHRARVLVQRGDRKGAAATYKRCMQLEPQDGRAWLGLSQLRRRQGREEEAARLLQGGLRVDPANPYLLQAWGTLQERRGFQDEALASYSRAVKAQPRHAASWVACGLLLAKRRRLDASAQCLRIA 199
BLAST of mRNA_Ecto-sp13_S_contig11875.1599.1 vs. uniprot
Match: A0A7S2XUS2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUS2_9STRA) HSP 1 Score: 114 bits (284), Expect = 1.430e-26 Identity = 64/189 (33.86%), Postives = 98/189 (51.85%), Query Frame = 1
Query: 82 LFEEYDAMVPGPAASAVGNNAGGDITGQERTGRPLKINLDLLSYQAKQKNIKGDYREARRLYRTCVELDPRDGRGWLGLAR----------------------QMQKIHKYDKAQRLFEAGLENCADNPYLLQAFAVMEEQRGNQAKALTLLNRSVRMHPEHTASWVALGLLNERNKRIDEARGCFQTA 582
+ + +D +PGP A + + RP+ ++ DLL++QAKQ + A LYR C++L+PRD R WLGLAR Y KA+ +++ GL C +NPYLLQ V+EE++GN+ A+ L R+ + P+H ASWVA G+L +++ +AR CF+ A
Sbjct: 3 MSDRFDVQIPGPDAGGISPV----VQKPPVKTRPVGLHFDLLAHQAKQALRNKNVTLAAALYRRCLQLNPRDARAWLGLARIETRGGVPLPTKGNAEGPGKPRHWSSHLNYVKAKEIYQQGLRRCPNNPYLLQGLGVLEEKKGNKQVAMGLYIRACQSDPQHAASWVARGVLEKKSGSPSKARQCFRQA 187
BLAST of mRNA_Ecto-sp13_S_contig11875.1599.1 vs. uniprot
Match: A0A7S1TD61_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD61_9RHOD) HSP 1 Score: 117 bits (292), Expect = 1.930e-25 Identity = 66/164 (40.24%), Postives = 96/164 (58.54%), Query Frame = 1
Query: 58 LSAKVEAELFEEYDAMVPGPAASAVGNNAGGDITGQERTGRPLKINLDLLSYQAKQKNIKGDYREARRLYRTCVELDPRDGRGWLGLARQMQKIHKYDKAQRLFEAGLENCADNPYLLQAFAVMEEQRGNQAKALTLLNRSVRMHPEHTASWVALGLLNERNKR 549
L KV+ L +E D VP A ++ N RPLKIN+DL + A+Q +G+ EA RL+R CV++DP DGRGWLGLAR + + + ++ F + C N +LLQA+ +MEE+ GN ++A LL+ ++R +H SWVALG+L R +R
Sbjct: 31 LERKVKEVLMDEED-RVPPLGAGSLENYL---------PSRPLKINVDLSHFHARQSQKRGNSSEALRLFRRCVDMDPYDGRGWLGLARLLFLRGEEEASRETFRNAVRYCRSNSHLLQAWGIMEEKAGNISRARRLLHSAIRADQKHAPSWVALGMLEYRRER 184
BLAST of mRNA_Ecto-sp13_S_contig11875.1599.1 vs. uniprot
Match: A0A7S1XW26_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XW26_9STRA) HSP 1 Score: 116 bits (290), Expect = 2.820e-25 Identity = 66/181 (36.46%), Postives = 95/181 (52.49%), Query Frame = 1
Query: 43 SNKTELSAKVEAELFEEYDAMVPGPAASAVGNNAGGDITGQERTGRPLKINLDLLSYQAKQKNIKGDYREARRLYRTCVELDPRDGRGWLGLARQMQKIHKYDKAQRLFEAGLENCADNPYLLQAFAVMEEQRGNQAKALTLLNRSVRMHPEHTASWVALGLLNERNKRIDEARGCFQTAT 585
S+ ++LS +VE L YD VP P + RPLK+NLDLL+Y A+ KG EA ++++ C+ LDP DGR WL LAR + KA++LFE G+ C NP++LQA+ ++RG+ +A L + V +H ASW+ L L+ + A CF AT
Sbjct: 19 SSLSDLSRRVEESLLALYDEQVPAPPKARR---------------RPLKVNLDLLNYSARNLKRKGRLNEAVKVWQRCLRLDPHDGRAWLALARMSANAGGHTKAKQLFEEGIRFCPGNPFILQAYGNYRQRRGDVVRAAELYAQGVAADAKHAASWLGLAKLSAAVGDQETAALCFCRAT 184
BLAST of mRNA_Ecto-sp13_S_contig11875.1599.1 vs. uniprot
Match: A0A7S2SRU7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRU7_9STRA) HSP 1 Score: 103 bits (256), Expect = 1.130e-23 Identity = 49/102 (48.04%), Postives = 67/102 (65.69%), Query Frame = 1
Query: 274 CVELDPRDGRGWLGLARQMQKIH-KYDKAQRLFEAGLENCADNPYLLQAFAVMEEQRGNQAKALTLLNRSVRMHPEHTASWVALGLLNERNKRIDEARGCFQ 576
+ +DP DGR WL LAR +++ K ++A+++F+ L +C NPYLLQAF V+EE+ GN +A L + R P H ASWVA G L R +RIDEAR CF+
Sbjct: 1 AMRMDPLDGRAWLALARHKTQVNRKPEEARKVFQEALGHCEGNPYLLQAFGVLEEREGNVPRAAELYKEATRWDPTHVASWVARGRLAHRLQRIDEARACFR 102
BLAST of mRNA_Ecto-sp13_S_contig11875.1599.1 vs. uniprot
Match: A0A1Z5JMI6_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JMI6_FISSO) HSP 1 Score: 102 bits (254), Expect = 3.440e-20 Identity = 58/150 (38.67%), Postives = 79/150 (52.67%), Query Frame = 1
Query: 169 RTGRPLKINLDLLSYQAKQKNIKGDYREARRLYRTCVELDPRDGRGWLGLARQMQKIHKYDKAQRLFEAGLENCAD----------NPYLLQAFAVMEEQRGNQAKALTLLNRSVRMHPEHTASWVALGLLNERN--KRIDEARGCFQTA 582
R G L IN D L+Y AK++ KG EA LY VE+DPRDGR +LGL+R Q+ + A+ G+ N A NP+LLQA +EE+ G ++A +L +VR P H A WVAL + R + + R CF+ A
Sbjct: 256 RLGNALPINADRLNYMAKKEMKKGRVEEAEELYERAVEIDPRDGRAYLGLSRCAQRRQDFKLAREWLNLGIANSASTFNGNPDRGANPFLLQALGCLEEKAGQLSQAESLYTSAVRSRPSHAAGWVALAQIRTRKLGQSVGAGRSCFEAA 405
BLAST of mRNA_Ecto-sp13_S_contig11875.1599.1 vs. uniprot
Match: A0A1E7FB08_9STRA (TPR-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FB08_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 3.230e-18 Identity = 54/151 (35.76%), Postives = 79/151 (52.32%), Query Frame = 1
Query: 169 RTGRPLKINLDLLSYQAKQKNIKGDYREARRLYRTCVELDPRDGRGWLGLARQMQKIHKYDKAQRLFEAGLENCAD-----------NPYLLQAFAVMEEQRGNQAKALTLLNRSVRMHPEHTASWVALGLLNERNKRIDEARG--CFQTA 582
R G PL++N D L+Y AK++ EA+ LY +++DPRDGR ++GL+R Q+ + A+ G+ NP+LLQ +EE+ G+ ++A +L +VR P H ASWVAL + R R A G CFQ A
Sbjct: 33 RLGNPLRVNADRLNYHAKKELRSNRLEEAQELYEQAIQIDPRDGRAYIGLSRCAQRRRDFKLAKEYLRIGIAQSVSCGYDSKPDVGANPFLLQTLGCLEEKMGHLSEAESLYISAVRSRPSHAASWVALAQIRTRKFRQGAAAGRVCFQAA 183 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11875.1599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11875.1599.1 >prot_Ecto-sp13_S_contig11875.1599.1 ID=prot_Ecto-sp13_S_contig11875.1599.1|Name=mRNA_Ecto-sp13_S_contig11875.1599.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=347bp IVPQKSPSAGSAAASNKTELSAKVEAELFEEYDAMVPGPAASAVGNNAGGback to top mRNA from alignment at Ecto-sp13_S_contig11875:2..4240- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11875.1599.1 ID=mRNA_Ecto-sp13_S_contig11875.1599.1|Name=mRNA_Ecto-sp13_S_contig11875.1599.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4239bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11875:2..4240- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11875:2..4240- >mRNA_Ecto-sp13_S_contig11875.1599.1 ID=mRNA_Ecto-sp13_S_contig11875.1599.1|Name=mRNA_Ecto-sp13_S_contig11875.1599.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1041bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11875:2..4240- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |