mRNA_Ecto-sp13_S_contig11871.1598.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11871.1598.1
Unique NamemRNA_Ecto-sp13_S_contig11871.1598.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11871.1598.1 vs. uniprot
Match: D7FT00_ECTSI (Avl9 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT00_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 6.720e-22
Identity = 66/86 (76.74%), Postives = 67/86 (77.91%), Query Frame = 1 
Query:    1 EWRIHFANGDHFAGTVLEGVPHGTGTYKYSNGDIFTGGGLRXXXXXXXXXXXXXXXGEW---VRDHISYQGKGALTLADGTTHDFS 249
            EWRI FANGDHFAGTVLEGVPHGTGTYKY            XXXXXXXXXXXXXXX      VRDHISYQGKGALTLADGTTHDF+
Sbjct:  928 EWRIRFANGDHFAGTVLEGVPHGTGTYKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRDHISYQGKGALTLADGTTHDFA 1013
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11871.1598.1 vs. uniprot
Match: A0A6H5KU41_9PHAE (Avl9 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU41_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.200e-21
Identity = 66/86 (76.74%), Postives = 67/86 (77.91%), Query Frame = 1 
Query:    1 EWRIHFANGDHFAGTVLEGVPHGTGTYKYSNGDIFTGGGLRXXXXXXXXXXXXXXXGEW---VRDHISYQGKGALTLADGTTHDFS 249
            EWRI FANGDH+AGTVLEGVPHGTGTYKY           RXXXXXXXXXXXXXXX      VRDHISY GKGALTLADGTTHDFS
Sbjct:  522 EWRIRFANGDHYAGTVLEGVPHGTGTYKYXXXXXXXXXXDRXXXXXXXXXXXXXXXXXXXXXVRDHISYHGKGALTLADGTTHDFS 607
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11871.1598.1 vs. uniprot
Match: A0A397A264_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A264_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.690e-12
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:    1 EWRIHFANGDHFAGTVLEGVPHGTGTYKYSNGDIFTGGGLRXXXXXXXXXXXXXXXGEWVRDHISYQGKGALTLADGTTHDFS 249
            +W I FA+G  + G  + G PHG G  KY+NGD+++G   R   XXXXXXXXXXXX     +H+S  GKG LT+A+GT H ++
Sbjct:   29 DWHIQFASGSSYNGECVGGKPHGHGVCKYTNGDVYSGEWARSGWXXXXXXXXXXXXXXXTANHVSLNGKGTLTMANGTVHAYA 111
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11871.1598.1 vs. uniprot
Match: A0A3L6VK77_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VK77_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.600e-11
Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:    1 EWRIHFANGDHFAGTVLEGVPHGTGTYKYSNGDIFTGGGLRXXXXXXXXXXXXXXXGEWVRDHISYQGKGALTLADGTTHDFS 249
            +W I FA+G  + G  + G PHG G  KY+NGD  +G       XXXXXXXX    GEW  +H+S  GKG LT+A+GT H ++
Sbjct:  111 DWHIQFASGSSYNGECVGGKPHGHGVCKYTNGDARSG------WXXXXXXXXHVFQGEWTANHVSLNGKGTLTMANGTVHAYA 187
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11871.1598.1 vs. uniprot
Match: A0A3L6VE59_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VE59_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 6.000e-11
Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:    1 EWRIHFANGDHFAGTVLEGVPHGTGTYKYSNGDIFTGGGLRXXXXXXXXXXXXXXXGEWVRDHISYQGKGALTLADGTTHDFS 249
            +W I FA+G  + G  + G PHG G  KY+NGD  +G       XXXXXXXX    GEW  +H+S  GKG LT+A+GT H ++
Sbjct:  235 DWHIQFASGSSYNGECVGGKPHGHGVCKYTNGDARSG------WXXXXXXXXHVFQGEWTANHVSLNGKGTLTMANGTVHAYA 311
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11871.1598.1 vs. uniprot
Match: A0A397BZG6_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BZG6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 6.650e-11
Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:    1 EWRIHFANGDHFAGTVLEGVPHGTGTYKYSNGDIFTGGGLRXXXXXXXXXXXXXXXGEWVRDHISYQGKGALTLADGTTHDFS 249
            +W I FA+G  + G  + G PHG G  KY+NGD  +G       XXXXXXXX    GEW  +H+S  GKG LT+A+GT H ++
Sbjct:  258 DWHIQFASGSSYNGECVGGKPHGHGVCKYTNGDARSG------WXXXXXXXXHVFQGEWTANHVSLNGKGTLTMANGTVHAYA 334
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11871.1598.1 vs. uniprot
Match: A0A397EBP9_9STRA (UDENN domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EBP9_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 8.150e-11
Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:    1 EWRIHFANGDHFAGTVLEGVPHGTGTYKYSNGDIFTGGGLRXXXXXXXXXXXXXXXGEWVRDHISYQGKGALTLADGTTHDFS 249
            +W I FA+G  + G  + G PHG G  KY+NGD  +G       XXXXXXXX    GEW  +H+S  GKG LT+A+GT H ++
Sbjct:  474 DWHIQFASGSSYNGECVGGKPHGHGVCKYTNGDARSG------WXXXXXXXXHVFQGEWTANHVSLNGKGTLTMANGTVHAYA 550
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11871.1598.1 vs. uniprot
Match: A0A024U3L8_9STRA (UDENN domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U3L8_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 5.720e-5
Identity = 41/86 (47.67%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:    1 EWRIHFANGDHFAGTVLEGVPHGTGTYKYSNGDIFTGGGLRXXXXXXXXXXXXXXXGEW---VRDHISYQGKGALTLADGTTHDFS 249
            +W I FA G  + G  ++G PHGTG  KY+N          XXXXXXXXXXXXXXX        +H+S  GKG LT+A+GT H ++
Sbjct:  964 DWHITFATGSAYNGQCVQGKPHGTGVCKYTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSNHVSLNGKGTLTMANGTVHAYA 1049
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11871.1598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FT00_ECTSI6.720e-2276.74Avl9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KU41_9PHAE1.200e-2176.74Avl9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A397A264_9STRA4.690e-1249.40Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A3L6VK77_9STRA1.600e-1146.99Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A3L6VE59_9STRA6.000e-1146.99Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A397BZG6_9STRA6.650e-1146.99Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A397EBP9_9STRA8.150e-1146.99UDENN domain-containing protein n=4 Tax=Aphanomyce... [more]
A0A024U3L8_9STRA5.720e-547.67UDENN domain-containing protein n=1 Tax=Aphanomyce... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11871contigEcto-sp13_S_contig11871:1888..2473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score97.4
Seed ortholog evalue3.3e-18
Seed eggNOG ortholog2880.D7FT00
Model size252
KEGG koko:K03283
KEGG TC1.A.33.1
KEGG Pathwayko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG4642@1,COG5253@1,KOG0229@2759,KOG0231@2759
Cds size252
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462626.5416143-CDS-Ecto-sp13_S_contig11871:1887..20001681462626.5416143-CDS-Ecto-sp13_S_contig11871:1887..2000Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11871 1888..2000 +
1681462626.553629-CDS-Ecto-sp13_S_contig11871:2334..24731681462626.553629-CDS-Ecto-sp13_S_contig11871:2334..2473Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11871 2335..2473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11871.1598.1prot_Ecto-sp13_S_contig11871.1598.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11871 1888..2473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11871.1598.1

>prot_Ecto-sp13_S_contig11871.1598.1 ID=prot_Ecto-sp13_S_contig11871.1598.1|Name=mRNA_Ecto-sp13_S_contig11871.1598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
EWRIHFANGDHFAGTVLEGVPHGTGTYKYSNGDIFTGGGLRHGQGICVFA
NGEKFEGEWVRDHISYQGKGALTLADGTTHDFS*
back to top

mRNA from alignment at Ecto-sp13_S_contig11871:1888..2473+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11871.1598.1 ID=mRNA_Ecto-sp13_S_contig11871.1598.1|Name=mRNA_Ecto-sp13_S_contig11871.1598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=586bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11871:1888..2473+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGTGGCGAATACACTTCGCGAACGGGGATCATTTCGCCGGAACGGTCCT
GGAAGGCGTTCCGCACGGCACCGGGACCTACAAGTACTCGAACGGGGACA
TCTTCACCGGAGGGTAGGATGACAATTTTCCCCTGTCCCTAACCCTAGGG
ACGGCAAGGCGGAGGGGAGGTTGTCGTGTCGAATGGGTCTTCCTTTGTCG
ATTTGTGTCGGTATGTGTAGGAAAGGCTTTTTGAGACGGCCCCAGGTTGT
GTCGAATAGTCGGAGTCGTAGGTTGAAAGCTTTCCGATGTTTTCGGCACC
CATGTGAGGCGCGCTCTCCAACATGCCTCACGAAGGGAGCCGAAGTAGCC
GTTTCGTCTTCTTAAACCGTGAAAAAATTGGCCAACCGTCACAAATCCTT
CACCTGCACCCCTACCTGTCGGCGTAACCCACACACAGCTGGGACAGAGG
CCTCCGACACGGGCAGGGCATCTGTGTCTTCGCGAACGGGGAGAAGTTCG
AGGGGGAGTGGGTGCGAGATCACATCTCCTACCAGGGCAAAGGGGCGCTT
ACCCTCGCAGACGGGACTACCCACGACTTTTCTTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11871:1888..2473+

>mRNA_Ecto-sp13_S_contig11871.1598.1 ID=mRNA_Ecto-sp13_S_contig11871.1598.1|Name=mRNA_Ecto-sp13_S_contig11871.1598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11871:1888..2473+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGTGGCGAATACACTTCGCGAACGGGGATCATTTCGCCGGAACGGTCCT
GGAAGGCGTTCCGCACGGCACCGGGACCTACAAGTACTCGAACGGGGACA
TCTTCACCGGAGGAGGCCTCCGACACGGGCAGGGCATCTGTGTCTTCGCG
AACGGGGAGAAGTTCGAGGGGGAGTGGGTGCGAGATCACATCTCCTACCA
GGGCAAAGGGGCGCTTACCCTCGCAGACGGGACTACCCACGACTTTTCTT
GA
back to top