mRNA_Ecto-sp13_S_contig11867.1596.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11867.1596.1
Unique NamemRNA_Ecto-sp13_S_contig11867.1596.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11867.1596.1 vs. uniprot
Match: D7FGT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT1_ECTSI)

HSP 1 Score: 386 bits (991), Expect = 2.520e-132
Identity = 204/247 (82.59%), Postives = 218/247 (88.26%), Query Frame = 2
Query:    8 MYSKTVSSCSLLTLVGVAHGLIETCEDLQAAFNLTQTQDVVDEIYPFQDIECETFTNMTMTSNTLTLNSSEDMNYFIGSSSLTNVRLDVTNGAELIWETNVEFIGDEEVENNVDGGAVFVGEGSTVRFLNDLEMQDIRITNERDGDSDYALFERSGGCVWTAGSFVVDGEATFTGCDITGQGESSAGFGGAVYVGVTGSVSFNQGVTISETFITDDDGGDGGGIYNLGELNIAGASRFVDIAARSAV 748
            M+S+ VS  SLL LVGVAHGLIETCEDLQAAFNLTQTQDV+DEI+PFQDIECETFTNMTMTSNTLTLNSSE+++ F GSSSLTNVRL VTNGAELIWET+V FIGDEEVE  VDGGAVFVGEGSTV FLNDLEM+DIRI NERD DSD+A F RSGGCVWTAGSF+VDGEATFT CDITG GES  G GGA+YVG TGSVSFNQGV ISETFITDD GG GGGIYNLGE+ IAG SRF DI+A S V
Sbjct:    1 MFSEIVSPFSLLFLVGVAHGLIETCEDLQAAFNLTQTQDVIDEIHPFQDIECETFTNMTMTSNTLTLNSSENLDNFFGSSSLTNVRLVVTNGAELIWETHVNFIGDEEVELMVDGGAVFVGEGSTVHFLNDLEMEDIRIINERDEDSDFASFVRSGGCVWTAGSFIVDGEATFTRCDITGAGESPPGPGGAIYVGATGSVSFNQGVAISETFITDDFGGQGGGIYNLGEVTIAGDSRFEDISASSGV 247          
BLAST of mRNA_Ecto-sp13_S_contig11867.1596.1 vs. uniprot
Match: D7G0Q4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Q4_ECTSI)

HSP 1 Score: 345 bits (884), Expect = 4.680e-116
Identity = 179/245 (73.06%), Postives = 207/245 (84.49%), Query Frame = 2
Query:    8 MYSKTVSSCSLLTLVGVAHGLIETCEDLQAAFNLTQTQDVVDEIYPFQDIECETFTNMTMTSNTLTLNSSEDMNYFIGSSSLTNVRLDVTNGAELIWETNVEFIGDEEVENNVDGGAVFVGEGSTVRFLNDLEMQDIRITNERDGDSDYALFERSGGCVWTAGSFVVDGEATFTGCDITGQGESSAGFGGAVYVGVTGSVSFNQGVTISETFITDDDGGDGGGIYNLGELNIAGASRFVDIAARS 742
            MY+K  SS +LL + GVA GLIETCEDLQAAF LTQTQDVVDEI  F DIEC  FTNMTMTSNTLTLNS+ED++   GS+SL NVRL+VTNGA+L+WET+V F+GDEEVENNV+GG VFVGEGSTVRFLND++++D+RITNERDGDSD A+F R GGCVWTAG F VDGEATFT C I G GES  G GGAV+V  TGSV FNQGV IS+TFIT+D GGDGGGI+NLG++NI G SRF +++ARS
Sbjct:    1 MYTKLFSSLALLVIPGVARGLIETCEDLQAAFELTQTQDVVDEISTFGDIECPMFTNMTMTSNTLTLNSAEDLSITSGSTSLINVRLEVTNGAKLVWETSVFFLGDEEVENNVNGGGVFVGEGSTVRFLNDVQIRDVRITNERDGDSDNAVFVRDGGCVWTAGFFRVDGEATFTSCAIIGTGESPPGSGGAVFVDATGSVLFNQGVAISDTFITNDGGGDGGGIFNLGKVNIKGDSRFEELSARS 245          
BLAST of mRNA_Ecto-sp13_S_contig11867.1596.1 vs. uniprot
Match: A0A6H5JCE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCE5_9PHAE)

HSP 1 Score: 338 bits (868), Expect = 1.670e-112
Identity = 179/248 (72.18%), Postives = 206/248 (83.06%), Query Frame = 2
Query:    5 TMYSKTVSSCSLLTLVGVAHGLIETCEDLQAAFNLTQTQDVVDEIYPFQDIECETFTNMTMTSNTLTLNSSEDMNYFIGSSSLTNVRLDVTNGAELIWETNVEFIGDEEVENNVDGGAVFVGEGSTVRFLNDLEMQDIRITNERDGDSDYALFERSGGCVWTAGSFVVDGEATFTGCDITGQGESSAGFGGAVYVGVTGSVSFNQGVTISETFITDDDGGDGGGIYNLGELNIAGASRFVDIAARSAV 748
            TMY+K +SS +LL + G  HGLIETC+DL AAF  TQT+DVV E++PF DIECETFTNMTMTSN+LT++SSE+++ F GSSSL NVRLDVTNGA+L WETNV F GDEE +  VDGGAV+VGEGSTVRFLND++MQDI I NERD DSD++ F RSGGCVWTAG F VDGEATFTGCDI+G GES  G GGAVYVG TGSV FN GVTI++T ITDD GG GGGIYNLG++NI G SRF DI+A S V
Sbjct:   81 TMYTKGLSSLALLLIPGACHGLIETCDDLLAAFEQTQTEDVVVEMHPFADIECETFTNMTMTSNSLTVSSSENIDNFSGSSSLVNVRLDVTNGAKLFWETNVIFEGDEETDLMVDGGAVYVGEGSTVRFLNDVQMQDIAIINERDEDSDFSSFVRSGGCVWTAGYFRVDGEATFTGCDISGAGESPPGPGGAVYVGETGSVLFNGGVTITDTHITDDFGGSGGGIYNLGKVNIKGDSRFEDISASSGV 328          
BLAST of mRNA_Ecto-sp13_S_contig11867.1596.1 vs. uniprot
Match: D7G1Q9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Q9_ECTSI)

HSP 1 Score: 288 bits (738), Expect = 2.530e-94
Identity = 158/247 (63.97%), Postives = 180/247 (72.87%), Query Frame = 2
Query:    8 MYSKTVSSCSLLTLVGVAHGLIETCEDLQAAFNLTQTQDVVDEIYPFQDIECETFTNMTMTSNTLTLNSSEDMNYFIGSSSLTNVRLDVTNGAELIWETNVEFIGDEEVENNVDGGAVFVGEGSTVRFLNDLEMQDIRITNERDGDSDYALFERSGGCVWTAGSFVVDGEATFTGCDITGQGESSAGFGGAVYVGVTGSVSFNQGVTISETFITDDDGGDGGGIYNLGELNIAGASRFVDIAARSAV 748
            MY+K +SS +LL + G  HGLIETC+DL AAF  TQT+DVV E++PF DIEC+TFTNMTMTSNTLTL                             WETNV F GDEE E  VDGGAV+VGEGSTVRFLND++M+D+ I NERD DSD+A F RSGGCVWTAG F VDGEATFTGCDI G GES  G GGAVYVG TGSV FN+GVTI+ET ITDD GG GGGIYNLG++NI G SRF +I+A + V
Sbjct:    1 MYTKGLSSLALLLMPGTCHGLIETCDDLLAAFEQTQTEDVVVEMHPFADIECDTFTNMTMTSNTLTL----------------------------FWETNVIFEGDEEAELMVDGGAVYVGEGSTVRFLNDVQMRDVVIINERDEDSDFASFVRSGGCVWTAGYFRVDGEATFTGCDIIGAGESPPGPGGAVYVGETGSVLFNEGVTITETSITDDFGGKGGGIYNLGKVNIKGDSRFEEISASAGV 219          
BLAST of mRNA_Ecto-sp13_S_contig11867.1596.1 vs. uniprot
Match: D7G2Y5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Y5_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 1.210e-55
Identity = 110/241 (45.64%), Postives = 160/241 (66.39%), Query Frame = 2
Query:   23 VSSCSLLTLVG-VAHGLIETCEDLQAAFNLTQTQDVVDEIYPFQDIECETFTNMTMTSNTLTLNSSEDMNYFIGSSSLTNVRLDVTNGAELIWETNVEFIGDEEVENNVDGGAVFVGEGSTVRFLNDLEMQDIRITNERDGDSDYALFERSGGCVWTAGSFVVDGEATFTGCDITGQGESSAGFGGAVYVGVTGSVSFNQGVTISETFITDDDGGDGGGIYNLGELNIAGASRFVDIAARS 742
            +S+ +LL + G V  G +ETC+DL  AF LT +QDVV EI P QDI C++FT M+M++N+LT+ + +  +   GS  L  VR +VT+GA+L+W     F G E    +V+GGAV+VGEGS+ RF + L   ++ + +  +  SD+A ++  GGCV+  G F V+G A+F GC+ +G GESS G GG +YVG TGSV F   VT+ +  I DD+G +GGGIYNLG++NI G + F ++ A +
Sbjct:    7 ISAAALLLVSGSVCQGQLETCQDLLDAFALTASQDVVVEIQPGQDITCDSFTTMSMSANSLTVMTPDGQS---GSVGLNEVRFEVTDGAKLLWYPGASFTGTEY--QDVNGGAVYVGEGSSARFYDTLTTSEVGVRSVPEEGSDFASYQLIGGCVYVDGYFRVEGHASFVGCENSGGGESSPGPGGVMYVGETGSVLFAGEVTMQDVSIIDDEGNNGGGIYNLGKVNIKGNAVFQNLRAEA 242          
BLAST of mRNA_Ecto-sp13_S_contig11867.1596.1 vs. uniprot
Match: A0A6H5JYQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ0_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 4.640e-52
Identity = 111/245 (45.31%), Postives = 158/245 (64.49%), Query Frame = 2
Query:   23 VSSCSLLTLVG-VAHGLIETCEDLQAAFNLTQTQDVVDEIYPFQDIECETFTNMTMTSNTLTLNSSEDMNYFIGSSSLTNVRLDVTNGAELIWETNVEFIGDEEVENNVDGGAVFVGEGSTVRFLNDLEMQDIRITNERDGDSDYALFERSGGCV----WTAGSFVVDGEATFTGCDITGQGESSAGFGGAVYVGVTGSVSFNQGVTISETFITDDDGGDGGGIYNLGELNIAGASRFVDIAARS 742
            +S+ +LL + G V  G +ETC+DL  AF LT +QDVV EI P QDI C+ FT M+M++N+LT+ +++  +   GS  L  VR +VT+GA+L W     F   E    +V+GGAV+VGEGST RF + L   ++ + +  +  SD+A +E  GGCV    +  G F V+G A+F GC+ +G GESS G GG +YVG TGSV F   VT+ +  I DD+G +GGGIYNLG++NI G + F ++ A +
Sbjct:  237 ISAAALLLVSGSVCRGQVETCQDLLDAFALTASQDVVVEIQPGQDITCDNFTTMSMSANSLTVTATDGQS---GSVGLNEVRFEVTDGAKLFWHPGASFT--ETDYQDVNGGAVYVGEGSTARFYDTLTTSEVGVRSVPEEGSDFASYELIGGCVRAYTYVDGYFRVEGHASFVGCENSGGGESSPGPGGVMYVGETGSVLFAGEVTMQDVSIIDDEGNNGGGIYNLGKVNIKGNALFQNLRAEA 476          
BLAST of mRNA_Ecto-sp13_S_contig11867.1596.1 vs. uniprot
Match: D8LG63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG63_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 5.900e-41
Identity = 75/114 (65.79%), Postives = 91/114 (79.82%), Query Frame = 2
Query:  407 MQDIRITNERDGDSDYALFERSGGCVWTAGSFVVDGEATFTGCDITGQGESSAGFGGAVYVGVTGSVSFNQGVTISETFITDDDGGDGGGIYNLGELNIAGASRFVDIAARSAV 748
            M+D+ I NE D DSDYA ++ SGGCV TAG+F V+G+ATFTGC+  G GES+ G GGA++V  TGSVSF++GVTI ET ITDD GG GGGIYNLGE+N+AG SRF DI+A S V
Sbjct:    1 MRDVGIINETDEDSDYASYQHSGGCVRTAGTFTVNGDATFTGCESVGAGESAPGPGGAIFVSETGSVSFSEGVTIMETSITDDFGGQGGGIYNLGEVNVAGGSRFEDISASSGV 114          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11867.1596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FGT1_ECTSI2.520e-13282.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0Q4_ECTSI4.680e-11673.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCE5_9PHAE1.670e-11272.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1Q9_ECTSI2.530e-9463.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2Y5_ECTSI1.210e-5545.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYQ0_9PHAE4.640e-5245.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG63_ECTSI5.900e-4165.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11867contigEcto-sp13_S_contig11867:1954..2701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size749
Hectar predicted targeting categorysignal peptide
Exons1
Cds size741
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462626.3473418-UTR-Ecto-sp13_S_contig11867:1953..19601681462626.3473418-UTR-Ecto-sp13_S_contig11867:1953..1960Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11867 1954..1960 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462626.3555164-CDS-Ecto-sp13_S_contig11867:1960..27011681462626.3555164-CDS-Ecto-sp13_S_contig11867:1960..2701Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11867 1961..2701 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11867.1596.1prot_Ecto-sp13_S_contig11867.1596.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11867 1961..2701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11867.1596.1

>prot_Ecto-sp13_S_contig11867.1596.1 ID=prot_Ecto-sp13_S_contig11867.1596.1|Name=mRNA_Ecto-sp13_S_contig11867.1596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=247bp
MYSKTVSSCSLLTLVGVAHGLIETCEDLQAAFNLTQTQDVVDEIYPFQDI
ECETFTNMTMTSNTLTLNSSEDMNYFIGSSSLTNVRLDVTNGAELIWETN
VEFIGDEEVENNVDGGAVFVGEGSTVRFLNDLEMQDIRITNERDGDSDYA
LFERSGGCVWTAGSFVVDGEATFTGCDITGQGESSAGFGGAVYVGVTGSV
SFNQGVTISETFITDDDGGDGGGIYNLGELNIAGASRFVDIAARSAV
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mRNA from alignment at Ecto-sp13_S_contig11867:1954..2701+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11867.1596.1 ID=mRNA_Ecto-sp13_S_contig11867.1596.1|Name=mRNA_Ecto-sp13_S_contig11867.1596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=748bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11867:1954..2701+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCACAATGTACTCGAAGACGGTCTCATCCTGTTCACTTCTCACGCTGG TGGGAGTTGCCCATGGGTTGATCGAGACATGCGAGGACCTCCAGGCCGCG TTCAATCTAACCCAGACTCAAGATGTCGTGGACGAGATCTATCCCTTCCA GGATATCGAGTGCGAGACGTTCACCAACATGACCATGACATCGAACACCC TCACCCTCAACTCGAGTGAAGACATGAACTACTTTATCGGAAGCTCGTCG CTGACGAATGTCAGGCTGGATGTCACAAACGGAGCGGAGCTGATCTGGGA GACGAATGTGGAGTTCATCGGAGACGAAGAAGTCGAAAACAATGTCGACG GAGGGGCTGTTTTTGTCGGTGAAGGCTCTACTGTGCGATTCTTGAACGAC CTCGAGATGCAGGATATCCGTATCACCAATGAGAGGGATGGGGATTCTGA CTACGCCTTGTTCGAACGTAGCGGAGGCTGCGTATGGACGGCCGGGTCCT TCGTCGTGGACGGAGAAGCGACTTTCACGGGCTGTGACATCACCGGTCAG GGAGAGAGCTCAGCGGGCTTCGGAGGAGCCGTCTACGTTGGCGTGACGGG ATCCGTTTCATTCAACCAGGGAGTCACCATAAGCGAGACGTTCATCACCG ACGACGATGGAGGGGACGGGGGCGGCATATACAACCTTGGCGAGTTGAAC ATTGCGGGTGCCTCCCGCTTCGTGGACATCGCGGCAAGGTCTGCCGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11867:1954..2701+

>mRNA_Ecto-sp13_S_contig11867.1596.1 ID=mRNA_Ecto-sp13_S_contig11867.1596.1|Name=mRNA_Ecto-sp13_S_contig11867.1596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=741bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11867:1954..2701+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACTCGAAGACGGTCTCATCCTGTTCACTTCTCACGCTGGTGGGAGT
TGCCCATGGGTTGATCGAGACATGCGAGGACCTCCAGGCCGCGTTCAATC
TAACCCAGACTCAAGATGTCGTGGACGAGATCTATCCCTTCCAGGATATC
GAGTGCGAGACGTTCACCAACATGACCATGACATCGAACACCCTCACCCT
CAACTCGAGTGAAGACATGAACTACTTTATCGGAAGCTCGTCGCTGACGA
ATGTCAGGCTGGATGTCACAAACGGAGCGGAGCTGATCTGGGAGACGAAT
GTGGAGTTCATCGGAGACGAAGAAGTCGAAAACAATGTCGACGGAGGGGC
TGTTTTTGTCGGTGAAGGCTCTACTGTGCGATTCTTGAACGACCTCGAGA
TGCAGGATATCCGTATCACCAATGAGAGGGATGGGGATTCTGACTACGCC
TTGTTCGAACGTAGCGGAGGCTGCGTATGGACGGCCGGGTCCTTCGTCGT
GGACGGAGAAGCGACTTTCACGGGCTGTGACATCACCGGTCAGGGAGAGA
GCTCAGCGGGCTTCGGAGGAGCCGTCTACGTTGGCGTGACGGGATCCGTT
TCATTCAACCAGGGAGTCACCATAAGCGAGACGTTCATCACCGACGACGA
TGGAGGGGACGGGGGCGGCATATACAACCTTGGCGAGTTGAACATTGCGG
GTGCCTCCCGCTTCGTGGACATCGCGGCAAGGTCTGCCGTT
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