mRNA_Ecto-sp13_S_contig11867.1596.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11867.1596.1 vs. uniprot
Match: D7FGT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT1_ECTSI) HSP 1 Score: 386 bits (991), Expect = 2.520e-132 Identity = 204/247 (82.59%), Postives = 218/247 (88.26%), Query Frame = 2
Query: 8 MYSKTVSSCSLLTLVGVAHGLIETCEDLQAAFNLTQTQDVVDEIYPFQDIECETFTNMTMTSNTLTLNSSEDMNYFIGSSSLTNVRLDVTNGAELIWETNVEFIGDEEVENNVDGGAVFVGEGSTVRFLNDLEMQDIRITNERDGDSDYALFERSGGCVWTAGSFVVDGEATFTGCDITGQGESSAGFGGAVYVGVTGSVSFNQGVTISETFITDDDGGDGGGIYNLGELNIAGASRFVDIAARSAV 748
M+S+ VS SLL LVGVAHGLIETCEDLQAAFNLTQTQDV+DEI+PFQDIECETFTNMTMTSNTLTLNSSE+++ F GSSSLTNVRL VTNGAELIWET+V FIGDEEVE VDGGAVFVGEGSTV FLNDLEM+DIRI NERD DSD+A F RSGGCVWTAGSF+VDGEATFT CDITG GES G GGA+YVG TGSVSFNQGV ISETFITDD GG GGGIYNLGE+ IAG SRF DI+A S V
Sbjct: 1 MFSEIVSPFSLLFLVGVAHGLIETCEDLQAAFNLTQTQDVIDEIHPFQDIECETFTNMTMTSNTLTLNSSENLDNFFGSSSLTNVRLVVTNGAELIWETHVNFIGDEEVELMVDGGAVFVGEGSTVHFLNDLEMEDIRIINERDEDSDFASFVRSGGCVWTAGSFIVDGEATFTRCDITGAGESPPGPGGAIYVGATGSVSFNQGVAISETFITDDFGGQGGGIYNLGEVTIAGDSRFEDISASSGV 247
BLAST of mRNA_Ecto-sp13_S_contig11867.1596.1 vs. uniprot
Match: D7G0Q4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Q4_ECTSI) HSP 1 Score: 345 bits (884), Expect = 4.680e-116 Identity = 179/245 (73.06%), Postives = 207/245 (84.49%), Query Frame = 2
Query: 8 MYSKTVSSCSLLTLVGVAHGLIETCEDLQAAFNLTQTQDVVDEIYPFQDIECETFTNMTMTSNTLTLNSSEDMNYFIGSSSLTNVRLDVTNGAELIWETNVEFIGDEEVENNVDGGAVFVGEGSTVRFLNDLEMQDIRITNERDGDSDYALFERSGGCVWTAGSFVVDGEATFTGCDITGQGESSAGFGGAVYVGVTGSVSFNQGVTISETFITDDDGGDGGGIYNLGELNIAGASRFVDIAARS 742
MY+K SS +LL + GVA GLIETCEDLQAAF LTQTQDVVDEI F DIEC FTNMTMTSNTLTLNS+ED++ GS+SL NVRL+VTNGA+L+WET+V F+GDEEVENNV+GG VFVGEGSTVRFLND++++D+RITNERDGDSD A+F R GGCVWTAG F VDGEATFT C I G GES G GGAV+V TGSV FNQGV IS+TFIT+D GGDGGGI+NLG++NI G SRF +++ARS
Sbjct: 1 MYTKLFSSLALLVIPGVARGLIETCEDLQAAFELTQTQDVVDEISTFGDIECPMFTNMTMTSNTLTLNSAEDLSITSGSTSLINVRLEVTNGAKLVWETSVFFLGDEEVENNVNGGGVFVGEGSTVRFLNDVQIRDVRITNERDGDSDNAVFVRDGGCVWTAGFFRVDGEATFTSCAIIGTGESPPGSGGAVFVDATGSVLFNQGVAISDTFITNDGGGDGGGIFNLGKVNIKGDSRFEELSARS 245
BLAST of mRNA_Ecto-sp13_S_contig11867.1596.1 vs. uniprot
Match: A0A6H5JCE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCE5_9PHAE) HSP 1 Score: 338 bits (868), Expect = 1.670e-112 Identity = 179/248 (72.18%), Postives = 206/248 (83.06%), Query Frame = 2
Query: 5 TMYSKTVSSCSLLTLVGVAHGLIETCEDLQAAFNLTQTQDVVDEIYPFQDIECETFTNMTMTSNTLTLNSSEDMNYFIGSSSLTNVRLDVTNGAELIWETNVEFIGDEEVENNVDGGAVFVGEGSTVRFLNDLEMQDIRITNERDGDSDYALFERSGGCVWTAGSFVVDGEATFTGCDITGQGESSAGFGGAVYVGVTGSVSFNQGVTISETFITDDDGGDGGGIYNLGELNIAGASRFVDIAARSAV 748
TMY+K +SS +LL + G HGLIETC+DL AAF TQT+DVV E++PF DIECETFTNMTMTSN+LT++SSE+++ F GSSSL NVRLDVTNGA+L WETNV F GDEE + VDGGAV+VGEGSTVRFLND++MQDI I NERD DSD++ F RSGGCVWTAG F VDGEATFTGCDI+G GES G GGAVYVG TGSV FN GVTI++T ITDD GG GGGIYNLG++NI G SRF DI+A S V
Sbjct: 81 TMYTKGLSSLALLLIPGACHGLIETCDDLLAAFEQTQTEDVVVEMHPFADIECETFTNMTMTSNSLTVSSSENIDNFSGSSSLVNVRLDVTNGAKLFWETNVIFEGDEETDLMVDGGAVYVGEGSTVRFLNDVQMQDIAIINERDEDSDFSSFVRSGGCVWTAGYFRVDGEATFTGCDISGAGESPPGPGGAVYVGETGSVLFNGGVTITDTHITDDFGGSGGGIYNLGKVNIKGDSRFEDISASSGV 328
BLAST of mRNA_Ecto-sp13_S_contig11867.1596.1 vs. uniprot
Match: D7G1Q9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Q9_ECTSI) HSP 1 Score: 288 bits (738), Expect = 2.530e-94 Identity = 158/247 (63.97%), Postives = 180/247 (72.87%), Query Frame = 2
Query: 8 MYSKTVSSCSLLTLVGVAHGLIETCEDLQAAFNLTQTQDVVDEIYPFQDIECETFTNMTMTSNTLTLNSSEDMNYFIGSSSLTNVRLDVTNGAELIWETNVEFIGDEEVENNVDGGAVFVGEGSTVRFLNDLEMQDIRITNERDGDSDYALFERSGGCVWTAGSFVVDGEATFTGCDITGQGESSAGFGGAVYVGVTGSVSFNQGVTISETFITDDDGGDGGGIYNLGELNIAGASRFVDIAARSAV 748
MY+K +SS +LL + G HGLIETC+DL AAF TQT+DVV E++PF DIEC+TFTNMTMTSNTLTL WETNV F GDEE E VDGGAV+VGEGSTVRFLND++M+D+ I NERD DSD+A F RSGGCVWTAG F VDGEATFTGCDI G GES G GGAVYVG TGSV FN+GVTI+ET ITDD GG GGGIYNLG++NI G SRF +I+A + V
Sbjct: 1 MYTKGLSSLALLLMPGTCHGLIETCDDLLAAFEQTQTEDVVVEMHPFADIECDTFTNMTMTSNTLTL----------------------------FWETNVIFEGDEEAELMVDGGAVYVGEGSTVRFLNDVQMRDVVIINERDEDSDFASFVRSGGCVWTAGYFRVDGEATFTGCDIIGAGESPPGPGGAVYVGETGSVLFNEGVTITETSITDDFGGKGGGIYNLGKVNIKGDSRFEEISASAGV 219
BLAST of mRNA_Ecto-sp13_S_contig11867.1596.1 vs. uniprot
Match: D7G2Y5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Y5_ECTSI) HSP 1 Score: 191 bits (485), Expect = 1.210e-55 Identity = 110/241 (45.64%), Postives = 160/241 (66.39%), Query Frame = 2
Query: 23 VSSCSLLTLVG-VAHGLIETCEDLQAAFNLTQTQDVVDEIYPFQDIECETFTNMTMTSNTLTLNSSEDMNYFIGSSSLTNVRLDVTNGAELIWETNVEFIGDEEVENNVDGGAVFVGEGSTVRFLNDLEMQDIRITNERDGDSDYALFERSGGCVWTAGSFVVDGEATFTGCDITGQGESSAGFGGAVYVGVTGSVSFNQGVTISETFITDDDGGDGGGIYNLGELNIAGASRFVDIAARS 742
+S+ +LL + G V G +ETC+DL AF LT +QDVV EI P QDI C++FT M+M++N+LT+ + + + GS L VR +VT+GA+L+W F G E +V+GGAV+VGEGS+ RF + L ++ + + + SD+A ++ GGCV+ G F V+G A+F GC+ +G GESS G GG +YVG TGSV F VT+ + I DD+G +GGGIYNLG++NI G + F ++ A +
Sbjct: 7 ISAAALLLVSGSVCQGQLETCQDLLDAFALTASQDVVVEIQPGQDITCDSFTTMSMSANSLTVMTPDGQS---GSVGLNEVRFEVTDGAKLLWYPGASFTGTEY--QDVNGGAVYVGEGSSARFYDTLTTSEVGVRSVPEEGSDFASYQLIGGCVYVDGYFRVEGHASFVGCENSGGGESSPGPGGVMYVGETGSVLFAGEVTMQDVSIIDDEGNNGGGIYNLGKVNIKGNAVFQNLRAEA 242
BLAST of mRNA_Ecto-sp13_S_contig11867.1596.1 vs. uniprot
Match: A0A6H5JYQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ0_9PHAE) HSP 1 Score: 187 bits (475), Expect = 4.640e-52 Identity = 111/245 (45.31%), Postives = 158/245 (64.49%), Query Frame = 2
Query: 23 VSSCSLLTLVG-VAHGLIETCEDLQAAFNLTQTQDVVDEIYPFQDIECETFTNMTMTSNTLTLNSSEDMNYFIGSSSLTNVRLDVTNGAELIWETNVEFIGDEEVENNVDGGAVFVGEGSTVRFLNDLEMQDIRITNERDGDSDYALFERSGGCV----WTAGSFVVDGEATFTGCDITGQGESSAGFGGAVYVGVTGSVSFNQGVTISETFITDDDGGDGGGIYNLGELNIAGASRFVDIAARS 742
+S+ +LL + G V G +ETC+DL AF LT +QDVV EI P QDI C+ FT M+M++N+LT+ +++ + GS L VR +VT+GA+L W F E +V+GGAV+VGEGST RF + L ++ + + + SD+A +E GGCV + G F V+G A+F GC+ +G GESS G GG +YVG TGSV F VT+ + I DD+G +GGGIYNLG++NI G + F ++ A +
Sbjct: 237 ISAAALLLVSGSVCRGQVETCQDLLDAFALTASQDVVVEIQPGQDITCDNFTTMSMSANSLTVTATDGQS---GSVGLNEVRFEVTDGAKLFWHPGASFT--ETDYQDVNGGAVYVGEGSTARFYDTLTTSEVGVRSVPEEGSDFASYELIGGCVRAYTYVDGYFRVEGHASFVGCENSGGGESSPGPGGVMYVGETGSVLFAGEVTMQDVSIIDDEGNNGGGIYNLGKVNIKGNALFQNLRAEA 476
BLAST of mRNA_Ecto-sp13_S_contig11867.1596.1 vs. uniprot
Match: D8LG63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG63_ECTSI) HSP 1 Score: 148 bits (373), Expect = 5.900e-41 Identity = 75/114 (65.79%), Postives = 91/114 (79.82%), Query Frame = 2
Query: 407 MQDIRITNERDGDSDYALFERSGGCVWTAGSFVVDGEATFTGCDITGQGESSAGFGGAVYVGVTGSVSFNQGVTISETFITDDDGGDGGGIYNLGELNIAGASRFVDIAARSAV 748
M+D+ I NE D DSDYA ++ SGGCV TAG+F V+G+ATFTGC+ G GES+ G GGA++V TGSVSF++GVTI ET ITDD GG GGGIYNLGE+N+AG SRF DI+A S V
Sbjct: 1 MRDVGIINETDEDSDYASYQHSGGCVRTAGTFTVNGDATFTGCESVGAGESAPGPGGAIFVSETGSVSFSEGVTIMETSITDDFGGQGGGIYNLGEVNVAGGSRFEDISASSGV 114 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11867.1596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11867.1596.1 >prot_Ecto-sp13_S_contig11867.1596.1 ID=prot_Ecto-sp13_S_contig11867.1596.1|Name=mRNA_Ecto-sp13_S_contig11867.1596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=247bp MYSKTVSSCSLLTLVGVAHGLIETCEDLQAAFNLTQTQDVVDEIYPFQDIback to top mRNA from alignment at Ecto-sp13_S_contig11867:1954..2701+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11867.1596.1 ID=mRNA_Ecto-sp13_S_contig11867.1596.1|Name=mRNA_Ecto-sp13_S_contig11867.1596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=748bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11867:1954..2701+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11867:1954..2701+ >mRNA_Ecto-sp13_S_contig11867.1596.1 ID=mRNA_Ecto-sp13_S_contig11867.1596.1|Name=mRNA_Ecto-sp13_S_contig11867.1596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=741bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11867:1954..2701+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |