mRNA_Ecto-sp13_S_contig11866.1595.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11866.1595.1
Unique NamemRNA_Ecto-sp13_S_contig11866.1595.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11866.1595.1 vs. uniprot
Match: D8LH20_ECTSI (Fe2OG dioxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH20_ECTSI)

HSP 1 Score: 553 bits (1426), Expect = 1.150e-194
Identity = 268/273 (98.17%), Postives = 271/273 (99.27%), Query Frame = 3
Query:    3 NRGIRVVTYDAVADATAAQAGLAAGLSLRMGRTVAVHFCSLVPPKPQEGLRCTSETAGVDVPGLTLIKGFVTEEEEGSLLKHFVQGDDVRWTGPLKRRVQHFGRVFDYHTRHVDFDAPAPPLPECLTDVVREMGDRGLKPSDPDQLTLNEYQPGQGISPHVDTHSAFEDGLASLSLGSGCVMDMRHPDGVRVKNLYLPRGSLLVMEGPARYEWSHGIASRKTDMVDGVLTRRTTRISFTFRRVRDPAVACGCDFAKSCDRETPVATATFLKKG 821
            NRGIRVVTYDAVADATAAQAGLAAGL+ RMGRTVAVHFCSLVPPKP+EGLRCTSETAGVDVPGLTLIKGFVTEEEEGSLLKHFVQGDDVRWTGPLKRRVQHFGRVFDYHTRHVDFDAPAPPLPECLTDVVREMGDRGLKPSDPDQLTLNEY+PGQGISPHVDTHSAFEDGLASLSLGSGCVMDMRHPDGVRVKNLYLPRGSLLVMEGPARYEWSHGIASRKTDMVDGVLTRR TRISFTFRRVRDPAVACGCDFAKSCDRETPVATATFLKKG
Sbjct:   78 NRGIRVVTYDAVADATAAQAGLAAGLAPRMGRTVAVHFCSLVPPKPREGLRCTSETAGVDVPGLTLIKGFVTEEEEGSLLKHFVQGDDVRWTGPLKRRVQHFGRVFDYHTRHVDFDAPAPPLPECLTDVVREMGDRGLKPSDPDQLTLNEYKPGQGISPHVDTHSAFEDGLASLSLGSGCVMDMRHPDGVRVKNLYLPRGSLLVMEGPARYEWSHGIASRKTDMVDGVLTRRATRISFTFRRVRDPAVACGCDFAKSCDRETPVATATFLKKG 350          
BLAST of mRNA_Ecto-sp13_S_contig11866.1595.1 vs. uniprot
Match: L1ISM5_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1ISM5_GUITC)

HSP 1 Score: 190 bits (483), Expect = 1.320e-50
Identity = 103/237 (43.46%), Postives = 140/237 (59.07%), Query Frame = 3
Query:   75 GLSLRMGRTVAVHFCSLVPPKPQEGLRCTSETAGVDVPGLTLIKGFVTEEEEGSLLKHFVQGDDVRWTGPLKRRVQHFGRVFDYHTRHVDFDAPAPPLPECLTDVVREMGDRGLKPSDPDQLTLNEYQPGQGISPHVDTHSAFEDGLASLSLGSGCVMDMRHPDGVRVKNLYLPRGSLLVMEGPARYEWSHGIASRKTDMVDGVLTRRTTRISFTFRRVRDPAVACGCDFAKSCDRE 785
            GLS ++        C   P +P   + CTS +  + V GL L + F++ EE    L    Q D++ W   L RRVQHFG  FDY TR V+        P  L  + +      L   +PDQ T+NEYQPGQGI  HVDTHSAFEDG+ S+SLGS  VM+ R PDG+  KN+ L  GS L M+G +RY+W+HGI++RK+D+VDG   +R  R+S TFR+++     C C+F + CD +
Sbjct:  115 GLSGKLVHVQYAEACEKRPGEPNPAIPCTSLSKDLVVEGLILKEDFLSPEESEDTLN---QLDELEWESSLSRRVQHFGFTFDYATRRVN-TLKTRAFPPFLLRIAQRALREKLLLFEPDQCTVNEYQPGQGIRSHVDTHSAFEDGILSVSLGSSVVMEFRSPDGLS-KNVQLKPGSALSMQGESRYKWAHGISNRKSDLVDGKFVQRCRRVSMTFRKIKTSP--CKCEFPEQCDSQ 344          
BLAST of mRNA_Ecto-sp13_S_contig11866.1595.1 vs. uniprot
Match: A0A6B2LAX0_9EUKA (Fe2OG dioxygenase domain-containing protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LAX0_9EUKA)

HSP 1 Score: 179 bits (453), Expect = 8.630e-49
Identity = 91/185 (49.19%), Postives = 123/185 (66.49%), Query Frame = 3
Query:  180 DVPGLTLIKGFVTEEEEGSLLKHFVQGDDVRWTGPLKRRVQHFGRVFDYHTRHVDFDAPAPPLPECLTDVVREMGDRGLKPSDPDQLTLNEYQPGQGISPHVDTHSAFEDGLASLSLGSGCVMDMRHPDGVRVKNLYLPRGSLLVMEGPARYEWSHGIASRKTDMVDGVLTRRTTRISFTFRRVR 734
            +VPGL +++ F++EEEE  +L+   Q    +W    +R VQH+G  + Y T  VD D     LP   TD+V+ M D G+    PDQLT+N+Y+PG GI PHVDTHS FE+ L SLSLG+  +M+ RHP+G ++  + LPR SL++M+G +RY WSHGIA RKTD++DGV   R  RIS TFR  R
Sbjct:  119 EVPGLIMMEQFISEEEEQHILEALNQS---QWIRLSQRYVQHYGYAYRYETNDVDPDHKIGDLPTFTTDIVKRMMDTGMVEHIPDQLTVNKYKPGSGIPPHVDTHSIFEEALISLSLGAPVIMEFRHPEG-QIIPVLLPRRSLIIMKGESRYLWSHGIAPRKTDLIDGVQVPREERISLTFRITR 299          
BLAST of mRNA_Ecto-sp13_S_contig11866.1595.1 vs. uniprot
Match: A0A813IB55_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IB55_POLGL)

HSP 1 Score: 180 bits (456), Expect = 1.170e-48
Identity = 100/225 (44.44%), Postives = 131/225 (58.22%), Query Frame = 3
Query:  162 SETAGVDVPGLTLIKGFVTEEEEGSLLKHFVQGDDVRWTGPLKRRVQHFGRVFDYHTRHVDFDAPAPPLPECLTDVVREMGDRGLKPSDPDQLTLNEYQPGQGISPHVDTHSAFEDGLASLSLGSGCVMDMRHPDGVRV--------------KNLYLPRGSLLVMEGPARYEWSHGIASRKTDMVD-GVLTRRTTRISFTFRRVRDPAVACGCDFAKSCDRETP 791
            + TA V+VPGL ++  FV++EE  +LL      D   W   +KRRVQH+G  FDY    +      P LP     VVR + + GL P   +QLT+NEY+PG GI+ HVDTHSAFEDG+A+++LGSG VM+ R P  +                KN++LP  SLLVM G ARY W HGIA RKTD ++ G +  R+ R+S TFRR R     C C +   CD + P
Sbjct:  115 ASTAHVEVPGLQVLPYFVSDEEAKALLAAV---DANAWDTTIKRRVQHYGHAFDYARLTIAEGGDVPELPSFCGGVVRRIAESGLMPEQVNQLTINEYEPGVGIALHVDTHSAFEDGIAAVTLGSGLVMEFRRPQLIGAACSSAGSPPAEASQKNVWLPPNSLLVMSGEARYAWQHGIAWRKTDCLEEGEVLPRSRRVSLTFRRARGRP--CDCRWPSMCDGQNP 334          
BLAST of mRNA_Ecto-sp13_S_contig11866.1595.1 vs. uniprot
Match: A0A812SEG8_9DINO (ALKBH8 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812SEG8_9DINO)

HSP 1 Score: 178 bits (451), Expect = 4.720e-48
Identity = 99/239 (41.42%), Postives = 136/239 (56.90%), Query Frame = 3
Query:  168 TAGVDVPGLTLIKGFVTEEEEGSLLKHFVQGDDVRWTGPLKRRVQHFGRVFDYHTRHVDFDAPAPPLPECLTDVVREMGDRGLKPSDPDQLTLNEYQPGQGISPHVDTHSAFEDGLASLSLGSGCVMDMRHPD-------------------GVRV-KNLYLPRGSLLVMEGPARYEWSHGIASRKTDMV-DGVLTRRTTRISFTFRRVRDPAVACGCDFAKSCDRETPVATATFLKKG 821
            T  V+VPGL ++  F+T+EE  SLL+     D   W   +KRRVQH+G  FDY T  +      P +P    +V+  + D  L P + DQLT+NEY+PG GI+ HVD HSAFEDG+A+++LGSG VM+ R  D                   G  + K+++LP  SLL++ G AR+ W HGIA RKTD + +G +  R+ R+S TFRR R     C C +   CD +TP A A   + G
Sbjct:  107 TQHVEVPGLHVVTDFITDEESVSLLREI---DARPWDTSIKRRVQHYGHAFDYATLKIAEQGTVPTMPSFAAEVISRLRDSSLMPHEVDQLTVNEYEPGVGIAFHVDAHSAFEDGIAAITLGSGIVMEFRKTDATSGKLSMGKHHRMAPPQAGAEISKHVWLPPKSLLIISGEARFAWQHGIAWRKTDCLKEGEVLPRSRRVSLTFRRARCGR-PCDCQWPALCDSQTPEAHAMPTRVG 341          
BLAST of mRNA_Ecto-sp13_S_contig11866.1595.1 vs. uniprot
Match: A0A0G4IWK2_PLABS (Alkylated DNA repair protein alkB homolog 8 n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IWK2_PLABS)

HSP 1 Score: 182 bits (463), Expect = 7.010e-48
Identity = 112/252 (44.44%), Postives = 139/252 (55.16%), Query Frame = 3
Query:   45 ATAAQA----GLAAGLSLRMGRTVAVHFCSLVPPKPQEGLRCTSETAGVDVPGLTLIKGFVTEEEEGSLLKHFVQGDDVRWTGPLKRRVQHFGRVFDYHTRHVDFDAPAPPLPECLTDVVREMGDRGLKPSDPDQLTLNEYQPGQGISPHVDTHSAFEDGLASLSLGSGCVMDMRHPDGVRVK-NLYLPRGSLLVMEGPARYEWSHGIASRKTDMVDGVLTRRTTRISFTFRRVRDPAVACGCDFAKSCDRE 785
            AT AQA    G  +G      R++ + +C +    P  GL   S TA V VPGL L+  F+TEE+E SLL          W    +RRV HFG  FDY T  VD +   PPLP  L  +   M   GL P   DQ+T+NEY PG GI  H+DTHSAF DG+AS++ G+  VM     DG   K ++ LPR SLLVM G ARY W H I  R+ D +DG +  R TR SFTFR V + + +C C F   CDR 
Sbjct:   61 ATPAQAQRVVGELSGHPALQSRSLTLTYC-MPRGDPFSGLDDVSSTARVAVPGLRLVHDFITEEQEASLLAMLTGASG--WVTLSRRRVLHFGVKFDYRTNDVDVNGVVPPLPPELQVLAERMHRDGLTPFRCDQVTVNEYVPGAGIPAHIDTHSAFHDGIASITAGAETVMTFTDDDGEGNKVDVLLPRRSLLVMNGAARYAWRHAIRCRRYDRIDGDVRERHTRTSFTFRAV-NYSRSCTCAFESKCDRH 308          
BLAST of mRNA_Ecto-sp13_S_contig11866.1595.1 vs. uniprot
Match: UPI0015A8EAB5 (alkylated DNA repair protein alkB homolog 8 n=1 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015A8EAB5)

HSP 1 Score: 184 bits (467), Expect = 8.290e-48
Identity = 118/284 (41.55%), Postives = 157/284 (55.28%), Query Frame = 3
Query:    3 NRGIRVVTYDAVADATAAQAGLAAGLSLRMGRTVAVHFCSLVPPKPQEGLRCTSETAGVDVPGLTLIKGFVTEEEEGSLLKHF---VQGDDVRWTGPLK-RRVQHFGRVFDYHTRHVDFDAPAPP-LPECLTDVVREMGDRGLKPSDPDQLTLNEYQPGQGISPHVDTHSAFEDGLASLSLGSGCVMDMRHPDGVRVKNLYLPRGSLLVMEGPARYEWSHGIASRKTDMV----------------DGVLTRRTTRISFTFRRVRDPAVACGCDFAKSCDRETP 791
            N+    VTY +V +A    A L        G+TVA++F  +     + G+ CT        PGL +++ F++ EEE  LL+      QGD +     LK RRV+H+G  F Y   +VD + P P  +P+    V++      L    PDQLT+N+Y+PGQGI PHVDTHSAFED + SLSLG+  VMD RHPDG  V  + LP  SLLVM+G +RY W+HGI  RK D+V                D  L++R TR SFTFRRVR   +AC C +  +CD   P
Sbjct:   82 NKPYAFVTYGSVEEARRCHASLNGRQLQCQGQTVALYFSFVEKVGGESGV-CTELP-----PGLKVLEDFISAEEEAGLLEAIDWAPQGDTLTGQKALKHRRVKHYGYEFRYDNNNVDKERPLPGGIPQFCNSVLKRCLRENLIDVTPDQLTINQYEPGQGIPPHVDTHSAFEDTILSLSLGAKTVMDFRHPDGRSVA-VVLPERSLLVMKGESRYLWTHGITPRKFDVVPAGDTVSSGPVTSDPGDLTLSKRDTRTSFTFRRVR--RMACDCAYPSACDSRRP 356          
BLAST of mRNA_Ecto-sp13_S_contig11866.1595.1 vs. uniprot
Match: A0A6G0X979_9STRA (Alkylated DNA repair protein alkB homolog 8 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X979_9STRA)

HSP 1 Score: 181 bits (460), Expect = 1.550e-47
Identity = 109/246 (44.31%), Postives = 144/246 (58.54%), Query Frame = 3
Query:    6 RGIRVVTYDAVADATAAQAGLAAGLSLRMG-RTVAVHFCSLVP-PKPQE-GLRCTSETAGVDVPGLTLIKGFVTEEEEGSLLKHFVQGDDVRWTGPLKRRVQHFGRVFDYHTRHVDFDAPAPPLPECLTDVVREMGDRGLKPSDPDQLTLNEYQPGQGISPHVDTHSAFEDGLASLSLGSGCVMDMRH-PDGVRVKNLYLPRGSLLVMEGPARYEWSHGIASRKTDMVDGVLTRRTTRISFTFRRV 731
            RG  +VT+   A A  A++ L       +G R V + F    P P   E  L CTS TA + +PGL++I GF++ E E  ++      D + W   ++RRVQH+G  F Y TR VD +AP  P+P     V+  +GD       PDQ+T+NEY PGQGI+PHVDT   F D +AS+SLGS  VMD R   D   VK+++L RGSL +M G ARY W HGIA RK D+V G L +R  R+S T R+V
Sbjct:   56 RGYILVTFSDAATAARARSALNGTSPDTLGNRKVFIQFSDNAPQPTSLEFSLSCTSATAQLVIPGLSIIDGFLSPEMEAVMIDSI---DALPWQDSIQRRVQHYGFAFRYDTRDVDVNAPLGPMPSFCNTVLTTLGDIRPDIERPDQITINEYMPGQGIAPHVDTPGVFTDYIASVSLGSDIVMDFRLVSDPSIVKHVHLKRGSLCLMVGEARYLWKHGIAYRKHDLVQGRLVKRDRRLSLTLRKV 298          
BLAST of mRNA_Ecto-sp13_S_contig11866.1595.1 vs. uniprot
Match: A0A662X692_9STRA (Fe2OG dioxygenase domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X692_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.760e-47
Identity = 98/210 (46.67%), Postives = 128/210 (60.95%), Query Frame = 3
Query:  159 TSETAGVDVPGLTLIKGFVTEEEEGSLLKHFVQGDDVRWTGPLK-RRVQHFGRVFDYHTRHVDFDAP-APPLPECLTDVVREMGDRGLKPSD-PDQLTLNEYQPGQGISPHVDTHSAFEDGLASLSLGSGCVMDMRHPDGVRVKNLYLPRGSLLVMEGPARYEWSHGIASRKTDMVDGVLTRRTTRISFTFRRVRDPAVACGCDFAKSCD 779
            TS   G+ VPGL     F+T+E+E + +  F Q D  RW   +K R+VQHFG  F Y TR  D D P + P+P  L  ++ ++   G+   D PDQ+T+NEY PGQGI+ H+DTHSAF   +ASLSL S  VM+ RHPDGVR + + LP  SL VM G +RYEW+H I  R  D++DG    R  R+S TFR++R     C C F   CD
Sbjct:  153 TSGPPGLRVPGLRFEPEFITKEQEAACIAFFDQQDGSRWANTVKARQVQHFGYEFSYETRRCDPDQPLSEPMPAVLQSIIDQIARCGIMDGDTPDQVTVNEYLPGQGIASHLDTHSAFTTTIASLSLCSEVVMEFRHPDGVRNEGVLLPARSLAVMSGASRYEWTHAIVPRTFDVIDGQQVDRQRRLSITFRKIRSGP--CECLFPAYCD 360          
BLAST of mRNA_Ecto-sp13_S_contig11866.1595.1 vs. uniprot
Match: T0S0M1_SAPDV (Alkylated DNA repair protein alkB homolog 8 n=2 Tax=Saprolegnia TaxID=4769 RepID=T0S0M1_SAPDV)

HSP 1 Score: 181 bits (459), Expect = 2.260e-47
Identity = 110/250 (44.00%), Postives = 145/250 (58.00%), Query Frame = 3
Query:    6 RGIRVVTYDAVADATAAQAGL-AAGLSLRMGRTVAVHFCSLVPPKPQ----EGLRCTSETAGVDVPGLTLIKGFVTEEEEGSLLKHFVQGDDVRWTGPLKRRVQHFGRVFDYHTRHVDFDAPAPPLPECLTDVVREMGDRGLKPSD--PDQLTLNEYQPGQGISPHVDTHSAFEDGLASLSLGSGCVMDMR-HPDGVRVKNLYLPRGSLLVMEGPARYEWSHGIASRKTDMVDGVLTRRTTRISFTFRRV 731
            +G  +VT+  V  A AA++ L     ++  GR + V F +  PP         L C S TA V VPGL++I  F++ +EE SLL      D   W   ++RRVQH+G  F Y TR VD  AP  PLP    +    M    L+P    PDQ+T+NEY PGQGI+PHVDT   F + +ASLSLGS  VMD R   D   VK++ L RGSL++M G ARY W HGIA RK D+++G +  RT R+S T R++
Sbjct:   56 KGYLLVTFATVEAAVAARSALQGTSPAVLGGRKLFVQFAAEAPPADAGSSGSSLSCPSTTAQVVVPGLSIIDDFISADEEASLLNTI---DGRAWEDSIQRRVQHYGYAFRYDTRDVDASAPLGPLPPFCAETAANM--HRLRPDLQLPDQITINEYLPGQGIAPHVDTADVFTEYIASLSLGSDIVMDFRLASDPSIVKHVVLKRGSLVLMVGEARYLWKHGIAYRKHDLINGSVAARTRRVSLTLRKI 300          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11866.1595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH20_ECTSI1.150e-19498.17Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
L1ISM5_GUITC1.320e-5043.46Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A6B2LAX0_9EUKA8.630e-4949.19Fe2OG dioxygenase domain-containing protein (Fragm... [more]
A0A813IB55_POLGL1.170e-4844.44Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A812SEG8_9DINO4.720e-4841.42ALKBH8 protein n=1 Tax=Symbiodinium natans TaxID=8... [more]
A0A0G4IWK2_PLABS7.010e-4844.44Alkylated DNA repair protein alkB homolog 8 n=1 Ta... [more]
UPI0015A8EAB58.290e-4841.55alkylated DNA repair protein alkB homolog 8 n=1 Ta... [more]
A0A6G0X979_9STRA1.550e-4744.31Alkylated DNA repair protein alkB homolog 8 n=1 Ta... [more]
A0A662X692_9STRA1.760e-4746.67Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
T0S0M1_SAPDV2.260e-4744.00Alkylated DNA repair protein alkB homolog 8 n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11866contigEcto-sp13_S_contig11866:278..4691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score508.8
Seed ortholog evalue1.4e-141
Seed eggNOG ortholog2880.D8LH20
Preferred nameALKBH8
Model size1430
KEGG koko:K10770,ko:K14685,ko:K17867,ko:K18670
KEGG TC2.A.100.1
KEGG Pathwayko04216,ko04978,map04216,map04978
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008198,GO:0008270,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016300,GO:0016491,GO:0016604,GO:0016705,GO:0016706,GO:0016740,GO:0016741,GO:0030488,GO:0031974,GO:0031981,GO:0032259,GO:0033554,GO:0034470,GO:0034641,GO:0034660,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051213,GO:0051716,GO:0055114,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:0140101,GO:1901360,GO:1901363
Exons6
EggNOG free text desc.dioxygenase activity
EggNOG OGsCOG3145@1,KOG4176@2759
EC2.1.1.229,2.7.12.1
Cds size735
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko02000,ko03012,ko03016
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11866.1595.1prot_Ecto-sp13_S_contig11866.1595.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11866 884..4602 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462626.2172408-UTR-Ecto-sp13_S_contig11866:277..8831681462626.2172408-UTR-Ecto-sp13_S_contig11866:277..883Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11866 278..883 -
1681462626.3173587-UTR-Ecto-sp13_S_contig11866:4602..46911681462626.3173587-UTR-Ecto-sp13_S_contig11866:4602..4691Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11866 4603..4691 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462626.2474215-CDS-Ecto-sp13_S_contig11866:883..10331681462626.2474215-CDS-Ecto-sp13_S_contig11866:883..1033Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11866 884..1033 -
1681462626.262367-CDS-Ecto-sp13_S_contig11866:1379..15161681462626.262367-CDS-Ecto-sp13_S_contig11866:1379..1516Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11866 1380..1516 -
1681462626.273464-CDS-Ecto-sp13_S_contig11866:2321..23981681462626.273464-CDS-Ecto-sp13_S_contig11866:2321..2398Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11866 2322..2398 -
1681462626.2817113-CDS-Ecto-sp13_S_contig11866:2987..31371681462626.2817113-CDS-Ecto-sp13_S_contig11866:2987..3137Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11866 2988..3137 -
1681462626.294045-CDS-Ecto-sp13_S_contig11866:3760..39331681462626.294045-CDS-Ecto-sp13_S_contig11866:3760..3933Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11866 3761..3933 -
1681462626.308617-CDS-Ecto-sp13_S_contig11866:4554..46021681462626.308617-CDS-Ecto-sp13_S_contig11866:4554..4602Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11866 4555..4602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11866.1595.1

>prot_Ecto-sp13_S_contig11866.1595.1 ID=prot_Ecto-sp13_S_contig11866.1595.1|Name=mRNA_Ecto-sp13_S_contig11866.1595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=245bp
MGRTVAVHFCSLVPPKPQEGLRCTSETAGVDVPGLTLIKGFVTEEEEGSL
LKHFVQGDDVRWTGPLKRRVQHFGRVFDYHTRHVDFDAPAPPLPECLTDV
VREMGDRGLKPSDPDQLTLNEYQPGQGISPHVDTHSAFEDGLASLSLGSG
CVMDMRHPDGVRVKNLYLPRGSLLVMEGPARYEWSHGIASRKTDMVDGVL
TRRTTRISFTFRRVRDPAVACGCDFAKSCDRETPVATATFLKKG*
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mRNA from alignment at Ecto-sp13_S_contig11866:278..4691-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11866.1595.1 ID=mRNA_Ecto-sp13_S_contig11866.1595.1|Name=mRNA_Ecto-sp13_S_contig11866.1595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4414bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11866:278..4691- (Ectocarpus species13 EcNAP12_S_4_19m)
AGAACCGAGGCATTCGGGTTGTGACGTACGACGCAGTCGCAGATGCGACG GCTGCCCAAGCGGGTCTGGCGGCGGGACTTTCTCTTCGAATGGGCCGAAC CGTGGCGGTTCATTTTTGCTCCCTGGTCCCTCCGAAGGTGATATATACAT TCTTGTTGTAACTATATTTTTTGTCTTCCGTGTCGTCGGTAAGAGTGACT TACTGTAATGCGCACATCGGGGCAAACCGGGTGCCTGTTGCTATTATTTT CCACGCCACGCGACAACGAGCCGGGGAAAGAGGCACCACTGCATTTTTCC CATGTAGTCCCAGCCAATCAGCGATACACGCCTTTCCTCAAGTACCACAC CTTGTTTGAAAGTGTTCGGACCACTCGGAAGCAATGTGAATGTCCCAAGG GTCCCTAAATCTCCGAAAAGGATGGTAGAAAAGCTAGCAACAGTAGTTTT CCAAGATTACTGCTGTGCAGCGATGACGCGTCGTTTCCTCCTGGGTCAAG CCCGCGGAAGATGCACTCTTCTGTCATACCCCGATCACATCTACAGCACG ACGCCGGTCTTTTGCCCCCCGACTGCAACACCCCCCCCGATATGACCACC CACGCAAATGATTGAAGCATCAGCAATCCTGACTGCTGACCATCGCCTAA CTTTTCCCCAACGCGGACATGTCCGACAAAACTCTCCTTGCTACTCAGGG GTAATTGACGGTTTGGTTGTCGTATTTCTGTCTCTCTCTCTCTTTTTGTT TTCGATAGCCGCAGGAAGGCTTGCGCTGTACTTCGGAGACCGCTGGCGTG GACGTTCCAGGCCTGACGTTGATCAAAGGGTTTGTTACAGAGGAGGAAGA AGGTTCCTTGCTGAAGCACTTCGTGCAGGGTGACGACGTCCGATGGACAG GCCCTCTCAAGCGTCGAGTTCAGCATTTCGGGTGAGAGCTTTCGCGTACG TATCGGAGGGGAAGGGTTCGATGGTCCTCTGCAGAAGGCTCGGGATACGT AGAAGCATTCACTTAGCGCCCGCAATAAAGAACCACTTCTTACAGTTTTG GTTGAGGCTAGGATTCTTACAGTAGTTCCTAGGTTATGTTGCGAATGGCC GCTACATGTGTTGTAGTTTAGGGGTTCTTAACCAAGCTTACAAGGTGCTC AAGTTCTTCGGAAGTTTAGTGTTTTTCGAGGCTATATCAATTTCTTCATT TACTGCCACGTTGTTAAGGGCGGGTACTAGCTGCCAGGGCTATTCGCTTG GGTTACGACCATACCGCTGCCTCGGACTTGTTGTGTGCGTTGTTCCGCTT CTGGTAGTGGTACCGTTTTCCTGTCAGCGTGCCCTCTTCCCTGTTTCTCC AATCTCTCGATTCGTGTAATGGGGTTCGACGATGCGCGGCGTTACCGTCT CATTTCGGCACCCATCCCCCTCCGGTGAGACCGACCGTTATTGCTTGCCG TGTGCTACTGAGATGAATCGATATCTTGTCGAGGAGGTTGAAGGCAAAAT CGACAAAATTATCCACAGCAGAGGCGTGCGTGTTGATTACCTTTGTCGTG TCAGGCGGGTCTTCGACTACCACACAAGGCATGTGGACTTCGATGCCCCC GCCCCGCCGCTGCCGGAGTGCCTGACGGACGTCGTGAGGGAGATGGGGGA TCGAGGTCTCAAACCGTCGGACCCGGATCAGTTGACCCTGAATGAGTACC AACCGTGAGCGACGCACAAATGAAAAAGCGTGAAGGAATCGTCAGCTGTC TGTCTACTATTCCCTGTTTTTTTTTTTGAGTTTGGCATCACAAGCCAACA GGATATTAATTGTACTTGAAAGTAAGTGCTCTCGGATCAATCGCCCGGAA GATCACCGCGTTAGGTGTGCTTGTGTATGTACATGCCACCGTCCGTTATT TGTAGCTTTGTTATTTGTAGCTGTGCTGCAAAGGAGGCCGGGGCGTGTGT TTCAATGTCATTCGGCGTGATTCCGCGCGAAGTCGTGAGTTTATGACGAC CTCGAGCTTTCCCCCTCTGCTACCCACATCAGGCTGGCACGAGTTGCCAC TCACCACATGGAAAGGGTCGTACTGTACGACTTTTTCTGCGGTTGCTGTC GATAATTGAGGAGACCTATTCCCAGAACCTAATAATGCTCGGCCGCGGTA TTAACCATTCGCGTCTGGTACAGAAGATAAAACATGGTGCATGAACATCC GTTTCGTTTGTTCGGCAGCGATAAGGGATTCGGAGTGCCGCTTGCACCCC TCCATTTTCCCGCCAAACGCATGAGTTTTGTTTTGTTCCCCAGGGGACAG GGGATATCTCCCCACGTGGACACCCACTCGGCGTTCGAAGACGGCTTGGC TTCGCTTTCTCTCGGCAGCGGTAAGTGTCAACTGCCATGCGTCAAGTGTC AAGCTCTTCTTTTAATGGCAGAGGCAAGCTTTGTCGGAGAGTAAGTAGCC CAGGCCTTTGTAGACACGGTGAGGTGTAGAGGGCGACGCACTGCAGGAGG AAGGCGGACAAAAAAGCTGCCCAGGCTTTTCTCCGTTGTGACTTCGAGTG ATGCGTCATAAAACGTGGAGAAACTTGTATTGATGGATGCCTGGAGTGGT TACGTGTGTGCACTGTGTTTATTGGGTGTGTATGCCGTGGCGCTACTGAT GTATGCTTGCAGTAGTGCCACCTATCTTGTGCGATGCGGCGGCGGGGCGA TACTCCATCGCTTGCTCTCGACAACGTGTTTTCGCTAGCTGTGTCTCTTC TTGGTGACGACACACGAAGAACGTGCGGTACCACGGGCAGCGTCAGGGGA GGTGCCTGTTGGAGATTTTTTTGGGGGGAAATTACCGACTCGTGTTTACA AGGGCGATTATTTGGCAAGGGGGCACAAGTTGCGTAGCTTGCGCGAAACC GCTCGCCTTTTGCTCGCCCCAGCCCCTGGAAACATTTCAATCACGTCAAT CCGTGTCCCCAACACCTGGCGTGCGTACGCTGATCGACTTTGTTTTCTTC GTTCCCCAGCAACGTGTGGCCTCGAGCTTTTTTTTGTGCTTCTTGCTGTC GCCGCCGTCACCCCTACACAGACAGCTGTCCTAATCGTAACCATGACGTC ATTCTTTTCTGTCTAAAGTGTTACTCCTACTGACGGTAACAAGCCCGTAC CACCACCGCTGGTCTACATACGCAGGCTGCGTGATGGACATGCGGCATCC GGACGGTGTGCGCGTGAAGAACTTGTACCTTCCGCGAGGCTCGTTACTTG TCATGGAGGGTCCCGCACGATACGAGTGGTCCCACGGGATCGCCAGCCGC AAGACGGACATGGTATGTGCGGTGTTTTGTCTCGGAATCCTGTCCTACCT CCACCGTATCTACCTCCGTTGTATGCCACGACGCGTCGATGACTGTAAGG TTTGGTCGTTTGACGCCGTGTGTGGTTGAGGAAGCCGGCGACAATGCACA TGGTGTGTTGCCACGCGTCTATTTTGTGTTTGAAGCCGAAGTGGGAGCAT TTGGCGAGTTGTCCTTCCTGGTTGAATGGTGGAAGGCATCGCAAGCCGTT CTTCCTCAATTGCGCGCTGTTGAGCGGTAACCAATTTCGGACCCTGACGC CTCCCCCCCTCGCTCCTCCATGTTCTCATGACGCCTGTGATTGCCACACA TTTCTCAGGTTGACGGCGTGCTGACCAGGCGGACGACGCGTATTTCGTTC ACGTTCAGGCGCGTGCGAGACCCGGCGGTGGCGTGCGGGTGCGACTTCGC TAAGAGCTGCGATCGAGAGACGCCTGTTGCCACCGCCACCTTTCTCAAGA AAGGGTGACCCTAAGGGATTTTTTGTACGAAAACCAGCACGCTACGGGGC GTTGGGATGCCAATCCGATGCAACCGTGATAACATAGGCCATGTCCTCTT GCGTAGCCCCCCGGAAGGCAAGCCACCTACCTTCCGAAGGGGAGCCTTGC AAAGAGTCCAACATATTGGTGGTGTAGAGGATTTGCTTTGAAGATTTTTC ACGGAACAACAACAGCAGCAGGTATGGTTTGGCTGAGGGAGTGTCTGTTG TCTTTGGACCCAGGCCATTCGTTGGTAACAACGGAGGGTTTTGGGTTTCC GCCTGCCGGGCTCATTCTGCGCCACGCGTCGAACGCCGTGGGGTATTGGG GGAGTCTTGAGGGAAGAACTGCTGCTGCTGCTGTTTACGAACTCAGACTA TACGCTGTGTTTGTGCTGTGTCCCTTCGTCCGGACAGCAGTACATTCTAG ATTCGGACACGTGGCACAGAATCGGCTTCCGCCAGTATGCATTTGAGATG ACTCTTACGACTGGAGGCTGTGTGTAGAACATGTTTATTTTCGAGTTGCC ACAAAATAAAGGCAGCTCGATGGCATTTTCACGGTACACCAAGAAGAGGT TTTCATTCCATGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11866:278..4691-

>mRNA_Ecto-sp13_S_contig11866.1595.1 ID=mRNA_Ecto-sp13_S_contig11866.1595.1|Name=mRNA_Ecto-sp13_S_contig11866.1595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=735bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11866:278..4691- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCCGAACCGTGGCGGTTCATTTTTGCTCCCTGGTCCCTCCGAAGCC
GCAGGAAGGCTTGCGCTGTACTTCGGAGACCGCTGGCGTGGACGTTCCAG
GCCTGACGTTGATCAAAGGGTTTGTTACAGAGGAGGAAGAAGGTTCCTTG
CTGAAGCACTTCGTGCAGGGTGACGACGTCCGATGGACAGGCCCTCTCAA
GCGTCGAGTTCAGCATTTCGGGCGGGTCTTCGACTACCACACAAGGCATG
TGGACTTCGATGCCCCCGCCCCGCCGCTGCCGGAGTGCCTGACGGACGTC
GTGAGGGAGATGGGGGATCGAGGTCTCAAACCGTCGGACCCGGATCAGTT
GACCCTGAATGAGTACCAACCGGGACAGGGGATATCTCCCCACGTGGACA
CCCACTCGGCGTTCGAAGACGGCTTGGCTTCGCTTTCTCTCGGCAGCGGC
TGCGTGATGGACATGCGGCATCCGGACGGTGTGCGCGTGAAGAACTTGTA
CCTTCCGCGAGGCTCGTTACTTGTCATGGAGGGTCCCGCACGATACGAGT
GGTCCCACGGGATCGCCAGCCGCAAGACGGACATGGTTGACGGCGTGCTG
ACCAGGCGGACGACGCGTATTTCGTTCACGTTCAGGCGCGTGCGAGACCC
GGCGGTGGCGTGCGGGTGCGACTTCGCTAAGAGCTGCGATCGAGAGACGC
CTGTTGCCACCGCCACCTTTCTCAAGAAAGGGTGA
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