mRNA_Ecto-sp13_S_contig1185.1589.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1185.1589.1 vs. uniprot
Match: D7FU18_ECTSI (Phospholipid-transporting ATPase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU18_ECTSI) HSP 1 Score: 216 bits (549), Expect = 2.050e-62 Identity = 113/128 (88.28%), Postives = 114/128 (89.06%), Query Frame = 1
Query: 16 QVMGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIETTNLTHTVARARARREVIQTRNLLLRGCVLRNTRWVVGLVLNTGPDTKIVMSSLE 399
QVMGAHEPNP+AKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIE R EVIQTRNLLLRGCVLRNTRWVVGLVLNTGPDTKIVMSSLE
Sbjct: 116 QVMGAHEPNPQAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIEVEGAGDDGGSCR---EVIQTRNLLLRGCVLRNTRWVVGLVLNTGPDTKIVMSSLE 240
BLAST of mRNA_Ecto-sp13_S_contig1185.1589.1 vs. uniprot
Match: A0A6H5KPG5_9PHAE (P-type phospholipid transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPG5_9PHAE) HSP 1 Score: 215 bits (547), Expect = 3.810e-62 Identity = 112/126 (88.89%), Postives = 113/126 (89.68%), Query Frame = 1
Query: 22 MGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIETTNLTHTVARARARREVIQTRNLLLRGCVLRNTRWVVGLVLNTGPDTKIVMSSLE 399
MGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIE + R EVIQTRNLLLRGCVLRNTRWVVGLVLNTGPDTKIVMSSLE
Sbjct: 1 MGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIEVEGASEDGGSCR---EVIQTRNLLLRGCVLRNTRWVVGLVLNTGPDTKIVMSSLE 123
BLAST of mRNA_Ecto-sp13_S_contig1185.1589.1 vs. uniprot
Match: A0A836CFX1_9STRA (Phospholipid-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFX1_9STRA) HSP 1 Score: 134 bits (336), Expect = 9.360e-34 Identity = 73/130 (56.15%), Postives = 88/130 (67.69%), Query Frame = 1
Query: 1 LPVITQVMGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIETTNLTHTVARARARREVIQTRNLLLRGCVLRNTRWVVGLVLNTGPDTKIVMS 390
+P ++ EP+P A AGICYVETKSLDGETNLKIRQ + +G V +A AL+GRVVMEHPN+LI+NF+GT+ + A A I LLLRGC LRNTR +GLVLNTG DTKI+MS
Sbjct: 217 IPADVLLLSVAEPDPAAAAGICYVETKSLDGETNLKIRQVPKGLVGAVRRSAEAGALRGRVVMEHPNRLINNFAGTLV---MAAGRGGAVAAAAPIDAEALLLRGCTLRNTRHALGLVLNTGMDTKIMMS 343
BLAST of mRNA_Ecto-sp13_S_contig1185.1589.1 vs. uniprot
Match: A0A3R6YRR3_9STRA (PhoLip_ATPase_N domain-containing protein (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YRR3_9STRA) HSP 1 Score: 125 bits (315), Expect = 1.970e-32 Identity = 68/124 (54.84%), Postives = 83/124 (66.94%), Query Frame = 1
Query: 19 VMGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIETTNLTHTVARARARREVIQTRNLLLRGCVLRNTRWVVGLVLNTGPDTKIVMS 390
++ HE N KAGICYVETKSLDGETNLK+RQA+ ST+ T D AL GRV E PNK+I F+G+ L +VA + I +N+LLRGC LRNT W+ GLV+NTGPDTKI+ S
Sbjct: 140 ILAVHEVNAAHKAGICYVETKSLDGETNLKLRQAMESTL-HAQTEADIHALHGRVECEVPNKVISRFNGSFFVDLLDGSVAN-----DPISIKNILLRGCQLRNTEWMYGLVINTGPDTKIMQS 257
BLAST of mRNA_Ecto-sp13_S_contig1185.1589.1 vs. uniprot
Match: A0A3M6VL00_9STRA (Phospholipid-transporting ATPase n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VL00_9STRA) HSP 1 Score: 127 bits (318), Expect = 2.620e-31 Identity = 67/125 (53.60%), Postives = 84/125 (67.20%), Query Frame = 1
Query: 19 VMGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIETTNLTHTVARARARREVIQTRNLLLRGCVLRNTRWVVGLVLNTGPDTKIVMSS 393
++ EPNP AGICYVETKSLDGETNLK+R A +T+ V T AAL G++ E+PNK+I F GT+ T T T A + I +N+LLRGC LRNT W+ GLV+NTGPDTKI+ S+
Sbjct: 226 ILAVAEPNPNEPAGICYVETKSLDGETNLKLRHACDATM-HVQTAAQVAALSGQLRCENPNKVIGRFDGTLSVTEETKT---AETHPQPIAIKNVLLRGCQLRNTDWIYGLVVNTGPDTKIMQSA 346
BLAST of mRNA_Ecto-sp13_S_contig1185.1589.1 vs. uniprot
Match: A0A024TFD6_9STRA (Phospholipid-transporting ATPase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TFD6_9STRA) HSP 1 Score: 126 bits (316), Expect = 4.860e-31 Identity = 68/127 (53.54%), Postives = 85/127 (66.93%), Query Frame = 1
Query: 19 VMGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIETTNLTHTVARARARREVIQTRNLLLRGCVLRNTRWVVGLVLNTGPDTKIVMSSLE 399
++ HE + + KAGICYVETKSLDGETNLK+RQA+ ST+ T + AL GRV E PNK I F+G+ L +VA + I +N+LLRGC LRNT W+ GLVLNTGPDTKI+ SS +
Sbjct: 179 ILAVHEVDADHKAGICYVETKSLDGETNLKLRQAMESTLD-AQTEAEVLALHGRVECEVPNKAISRFAGSFFVDLLDGSVAN-----DPISIKNILLRGCQLRNTEWMYGLVLNTGPDTKIMQSSAK 299
BLAST of mRNA_Ecto-sp13_S_contig1185.1589.1 vs. uniprot
Match: W4FH78_9STRA (Phospholipid-transporting ATPase n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FH78_9STRA) HSP 1 Score: 126 bits (316), Expect = 4.860e-31 Identity = 67/127 (52.76%), Postives = 85/127 (66.93%), Query Frame = 1
Query: 19 VMGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIETTNLTHTVARARARREVIQTRNLLLRGCVLRNTRWVVGLVLNTGPDTKIVMSSLE 399
++ HE + + KAGICYVETKSLDGETNLK+RQA+ ST+ V T + +AL GRV E PNK I F+G+ +A + I +N+LLRGC LRNT W+ GLVLNTGPDTKI+ SS +
Sbjct: 183 ILAVHEVDVDHKAGICYVETKSLDGETNLKLRQAMESTL-EVQTEAEVSALHGRVECEQPNKAISRFAGSFFVDQHDGYIAN-----DPISIKNILLRGCQLRNTEWMYGLVLNTGPDTKIMQSSAK 303
BLAST of mRNA_Ecto-sp13_S_contig1185.1589.1 vs. uniprot
Match: A0A024TEN3_9STRA (Phospholipid-transporting ATPase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TEN3_9STRA) HSP 1 Score: 125 bits (315), Expect = 6.620e-31 Identity = 68/124 (54.84%), Postives = 83/124 (66.94%), Query Frame = 1
Query: 19 VMGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIETTNLTHTVARARARREVIQTRNLLLRGCVLRNTRWVVGLVLNTGPDTKIVMS 390
++ HE N KAGICYVETKSLDGETNLK+RQA+ ST+ T D AL GRV E PNK+I F+G+ L +VA + I +N+LLRGC LRNT W+ GLV+NTGPDTKI+ S
Sbjct: 168 ILAVHEVNAAHKAGICYVETKSLDGETNLKLRQAMESTL-HAQTEADIHALHGRVECEVPNKVISRFNGSFFVDLLDGSVAN-----DPISIKNILLRGCQLRNTEWMYGLVINTGPDTKIMQS 285
BLAST of mRNA_Ecto-sp13_S_contig1185.1589.1 vs. uniprot
Match: A0A397D2J7_9STRA (Phospholipid-transporting ATPase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397D2J7_9STRA) HSP 1 Score: 125 bits (314), Expect = 8.410e-31 Identity = 67/127 (52.76%), Postives = 84/127 (66.14%), Query Frame = 1
Query: 19 VMGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIETTNLTHTVARARARREVIQTRNLLLRGCVLRNTRWVVGLVLNTGPDTKIVMSSLE 399
++ HE + + KAGICYVETKSLDGETNLK+RQA+ ST+ V T + +AL GRV E PNK I F+G+ +A I +N+LLRGC LRNT W+ GLVLNTGPDTKI+ SS +
Sbjct: 204 ILAVHEVDVDHKAGICYVETKSLDGETNLKLRQAMESTL-EVQTEAEVSALHGRVECEQPNKAISRFAGSFFVDQHDGYIAN-----HPISIKNILLRGCQLRNTEWMYGLVLNTGPDTKIMQSSAK 324
BLAST of mRNA_Ecto-sp13_S_contig1185.1589.1 vs. uniprot
Match: A0A485KCV2_9STRA (Phospholipid-transporting ATPase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KCV2_9STRA) HSP 1 Score: 125 bits (314), Expect = 9.040e-31 Identity = 65/131 (49.62%), Postives = 85/131 (64.89%), Query Frame = 1
Query: 1 LPVITQVMGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIETTNLTHTVARARARREVIQTRNLLLRGCVLRNTRWVVGLVLNTGPDTKIVMSS 393
+P ++ EP+P +GICYVETKSLDGETNLK+RQA+ +T+G + D +KG VV E PN I+ F+G I+ VA +E + +N+LLRGC LRNT WV GLVLNTG DTKI+ S+
Sbjct: 193 IPADVLILSVEEPDPSVPSGICYVETKSLDGETNLKLRQALPATMGTLRETHDLDKIKGTVVCETPNPYINKFAGNIDV-----WVAGQDWPKEPLSIKNILLRGCTLRNTDWVYGLVLNTGSDTKIMQSA 318 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1185.1589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1185.1589.1 >prot_Ecto-sp13_S_contig1185.1589.1 ID=prot_Ecto-sp13_S_contig1185.1589.1|Name=mRNA_Ecto-sp13_S_contig1185.1589.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp MGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALback to top mRNA from alignment at Ecto-sp13_S_contig1185:16556..17761+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1185.1589.1 ID=mRNA_Ecto-sp13_S_contig1185.1589.1|Name=mRNA_Ecto-sp13_S_contig1185.1589.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1206bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1185:16556..17761+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1185:16556..17761+ >mRNA_Ecto-sp13_S_contig1185.1589.1 ID=mRNA_Ecto-sp13_S_contig1185.1589.1|Name=mRNA_Ecto-sp13_S_contig1185.1589.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1185:16556..17761+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |