mRNA_Ecto-sp13_S_contig1185.1589.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1185.1589.1
Unique NamemRNA_Ecto-sp13_S_contig1185.1589.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1185.1589.1 vs. uniprot
Match: D7FU18_ECTSI (Phospholipid-transporting ATPase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU18_ECTSI)

HSP 1 Score: 216 bits (549), Expect = 2.050e-62
Identity = 113/128 (88.28%), Postives = 114/128 (89.06%), Query Frame = 1
Query:   16 QVMGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIETTNLTHTVARARARREVIQTRNLLLRGCVLRNTRWVVGLVLNTGPDTKIVMSSLE 399
            QVMGAHEPNP+AKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIE           R   EVIQTRNLLLRGCVLRNTRWVVGLVLNTGPDTKIVMSSLE
Sbjct:  116 QVMGAHEPNPQAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIEVEGAGDDGGSCR---EVIQTRNLLLRGCVLRNTRWVVGLVLNTGPDTKIVMSSLE 240          
BLAST of mRNA_Ecto-sp13_S_contig1185.1589.1 vs. uniprot
Match: A0A6H5KPG5_9PHAE (P-type phospholipid transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPG5_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 3.810e-62
Identity = 112/126 (88.89%), Postives = 113/126 (89.68%), Query Frame = 1
Query:   22 MGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIETTNLTHTVARARARREVIQTRNLLLRGCVLRNTRWVVGLVLNTGPDTKIVMSSLE 399
            MGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIE    +      R   EVIQTRNLLLRGCVLRNTRWVVGLVLNTGPDTKIVMSSLE
Sbjct:    1 MGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIEVEGASEDGGSCR---EVIQTRNLLLRGCVLRNTRWVVGLVLNTGPDTKIVMSSLE 123          
BLAST of mRNA_Ecto-sp13_S_contig1185.1589.1 vs. uniprot
Match: A0A836CFX1_9STRA (Phospholipid-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFX1_9STRA)

HSP 1 Score: 134 bits (336), Expect = 9.360e-34
Identity = 73/130 (56.15%), Postives = 88/130 (67.69%), Query Frame = 1
Query:    1 LPVITQVMGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIETTNLTHTVARARARREVIQTRNLLLRGCVLRNTRWVVGLVLNTGPDTKIVMS 390
            +P    ++   EP+P A AGICYVETKSLDGETNLKIRQ  +  +G V    +A AL+GRVVMEHPN+LI+NF+GT+    +      A A    I    LLLRGC LRNTR  +GLVLNTG DTKI+MS
Sbjct:  217 IPADVLLLSVAEPDPAAAAGICYVETKSLDGETNLKIRQVPKGLVGAVRRSAEAGALRGRVVMEHPNRLINNFAGTLV---MAAGRGGAVAAAAPIDAEALLLRGCTLRNTRHALGLVLNTGMDTKIMMS 343          
BLAST of mRNA_Ecto-sp13_S_contig1185.1589.1 vs. uniprot
Match: A0A3R6YRR3_9STRA (PhoLip_ATPase_N domain-containing protein (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YRR3_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.970e-32
Identity = 68/124 (54.84%), Postives = 83/124 (66.94%), Query Frame = 1
Query:   19 VMGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIETTNLTHTVARARARREVIQTRNLLLRGCVLRNTRWVVGLVLNTGPDTKIVMS 390
            ++  HE N   KAGICYVETKSLDGETNLK+RQA+ ST+    T  D  AL GRV  E PNK+I  F+G+     L  +VA      + I  +N+LLRGC LRNT W+ GLV+NTGPDTKI+ S
Sbjct:  140 ILAVHEVNAAHKAGICYVETKSLDGETNLKLRQAMESTL-HAQTEADIHALHGRVECEVPNKVISRFNGSFFVDLLDGSVAN-----DPISIKNILLRGCQLRNTEWMYGLVINTGPDTKIMQS 257          
BLAST of mRNA_Ecto-sp13_S_contig1185.1589.1 vs. uniprot
Match: A0A3M6VL00_9STRA (Phospholipid-transporting ATPase n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VL00_9STRA)

HSP 1 Score: 127 bits (318), Expect = 2.620e-31
Identity = 67/125 (53.60%), Postives = 84/125 (67.20%), Query Frame = 1
Query:   19 VMGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIETTNLTHTVARARARREVIQTRNLLLRGCVLRNTRWVVGLVLNTGPDTKIVMSS 393
            ++   EPNP   AGICYVETKSLDGETNLK+R A  +T+  V T    AAL G++  E+PNK+I  F GT+  T  T T   A    + I  +N+LLRGC LRNT W+ GLV+NTGPDTKI+ S+
Sbjct:  226 ILAVAEPNPNEPAGICYVETKSLDGETNLKLRHACDATM-HVQTAAQVAALSGQLRCENPNKVIGRFDGTLSVTEETKT---AETHPQPIAIKNVLLRGCQLRNTDWIYGLVVNTGPDTKIMQSA 346          
BLAST of mRNA_Ecto-sp13_S_contig1185.1589.1 vs. uniprot
Match: A0A024TFD6_9STRA (Phospholipid-transporting ATPase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TFD6_9STRA)

HSP 1 Score: 126 bits (316), Expect = 4.860e-31
Identity = 68/127 (53.54%), Postives = 85/127 (66.93%), Query Frame = 1
Query:   19 VMGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIETTNLTHTVARARARREVIQTRNLLLRGCVLRNTRWVVGLVLNTGPDTKIVMSSLE 399
            ++  HE + + KAGICYVETKSLDGETNLK+RQA+ ST+    T  +  AL GRV  E PNK I  F+G+     L  +VA      + I  +N+LLRGC LRNT W+ GLVLNTGPDTKI+ SS +
Sbjct:  179 ILAVHEVDADHKAGICYVETKSLDGETNLKLRQAMESTLD-AQTEAEVLALHGRVECEVPNKAISRFAGSFFVDLLDGSVAN-----DPISIKNILLRGCQLRNTEWMYGLVLNTGPDTKIMQSSAK 299          
BLAST of mRNA_Ecto-sp13_S_contig1185.1589.1 vs. uniprot
Match: W4FH78_9STRA (Phospholipid-transporting ATPase n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FH78_9STRA)

HSP 1 Score: 126 bits (316), Expect = 4.860e-31
Identity = 67/127 (52.76%), Postives = 85/127 (66.93%), Query Frame = 1
Query:   19 VMGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIETTNLTHTVARARARREVIQTRNLLLRGCVLRNTRWVVGLVLNTGPDTKIVMSSLE 399
            ++  HE + + KAGICYVETKSLDGETNLK+RQA+ ST+  V T  + +AL GRV  E PNK I  F+G+         +A      + I  +N+LLRGC LRNT W+ GLVLNTGPDTKI+ SS +
Sbjct:  183 ILAVHEVDVDHKAGICYVETKSLDGETNLKLRQAMESTL-EVQTEAEVSALHGRVECEQPNKAISRFAGSFFVDQHDGYIAN-----DPISIKNILLRGCQLRNTEWMYGLVLNTGPDTKIMQSSAK 303          
BLAST of mRNA_Ecto-sp13_S_contig1185.1589.1 vs. uniprot
Match: A0A024TEN3_9STRA (Phospholipid-transporting ATPase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TEN3_9STRA)

HSP 1 Score: 125 bits (315), Expect = 6.620e-31
Identity = 68/124 (54.84%), Postives = 83/124 (66.94%), Query Frame = 1
Query:   19 VMGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIETTNLTHTVARARARREVIQTRNLLLRGCVLRNTRWVVGLVLNTGPDTKIVMS 390
            ++  HE N   KAGICYVETKSLDGETNLK+RQA+ ST+    T  D  AL GRV  E PNK+I  F+G+     L  +VA      + I  +N+LLRGC LRNT W+ GLV+NTGPDTKI+ S
Sbjct:  168 ILAVHEVNAAHKAGICYVETKSLDGETNLKLRQAMESTL-HAQTEADIHALHGRVECEVPNKVISRFNGSFFVDLLDGSVAN-----DPISIKNILLRGCQLRNTEWMYGLVINTGPDTKIMQS 285          
BLAST of mRNA_Ecto-sp13_S_contig1185.1589.1 vs. uniprot
Match: A0A397D2J7_9STRA (Phospholipid-transporting ATPase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397D2J7_9STRA)

HSP 1 Score: 125 bits (314), Expect = 8.410e-31
Identity = 67/127 (52.76%), Postives = 84/127 (66.14%), Query Frame = 1
Query:   19 VMGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIETTNLTHTVARARARREVIQTRNLLLRGCVLRNTRWVVGLVLNTGPDTKIVMSSLE 399
            ++  HE + + KAGICYVETKSLDGETNLK+RQA+ ST+  V T  + +AL GRV  E PNK I  F+G+         +A        I  +N+LLRGC LRNT W+ GLVLNTGPDTKI+ SS +
Sbjct:  204 ILAVHEVDVDHKAGICYVETKSLDGETNLKLRQAMESTL-EVQTEAEVSALHGRVECEQPNKAISRFAGSFFVDQHDGYIAN-----HPISIKNILLRGCQLRNTEWMYGLVLNTGPDTKIMQSSAK 324          
BLAST of mRNA_Ecto-sp13_S_contig1185.1589.1 vs. uniprot
Match: A0A485KCV2_9STRA (Phospholipid-transporting ATPase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KCV2_9STRA)

HSP 1 Score: 125 bits (314), Expect = 9.040e-31
Identity = 65/131 (49.62%), Postives = 85/131 (64.89%), Query Frame = 1
Query:    1 LPVITQVMGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAALKGRVVMEHPNKLIDNFSGTIETTNLTHTVARARARREVIQTRNLLLRGCVLRNTRWVVGLVLNTGPDTKIVMSS 393
            +P    ++   EP+P   +GICYVETKSLDGETNLK+RQA+ +T+G +    D   +KG VV E PN  I+ F+G I+       VA     +E +  +N+LLRGC LRNT WV GLVLNTG DTKI+ S+
Sbjct:  193 IPADVLILSVEEPDPSVPSGICYVETKSLDGETNLKLRQALPATMGTLRETHDLDKIKGTVVCETPNPYINKFAGNIDV-----WVAGQDWPKEPLSIKNILLRGCTLRNTDWVYGLVLNTGSDTKIMQSA 318          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1185.1589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU18_ECTSI2.050e-6288.28Phospholipid-transporting ATPase, putative n=1 Tax... [more]
A0A6H5KPG5_9PHAE3.810e-6288.89P-type phospholipid transporter n=1 Tax=Ectocarpus... [more]
A0A836CFX1_9STRA9.360e-3456.15Phospholipid-transporting ATPase n=1 Tax=Tribonema... [more]
A0A3R6YRR3_9STRA1.970e-3254.84PhoLip_ATPase_N domain-containing protein (Fragmen... [more]
A0A3M6VL00_9STRA2.620e-3153.60Phospholipid-transporting ATPase n=2 Tax=Peronospo... [more]
A0A024TFD6_9STRA4.860e-3153.54Phospholipid-transporting ATPase n=2 Tax=Aphanomyc... [more]
W4FH78_9STRA4.860e-3152.76Phospholipid-transporting ATPase n=11 Tax=Aphanomy... [more]
A0A024TEN3_9STRA6.620e-3154.84Phospholipid-transporting ATPase n=1 Tax=Aphanomyc... [more]
A0A397D2J7_9STRA8.410e-3152.76Phospholipid-transporting ATPase (Fragment) n=1 Ta... [more]
A0A485KCV2_9STRA9.040e-3149.62Phospholipid-transporting ATPase n=1 Tax=Aphanomyc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1185contigEcto-sp13_S_contig1185:16556..17761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score214.9
Seed ortholog evalue2.1e-53
Seed eggNOG ortholog2880.D7FU18
Model size399
KEGG koko:K01530,ko:K14802
KEGG TC3.A.3.8
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.phospholipid-translocating ATPase activity
EggNOG OGsCOG0474@1,KOG0206@2759
EC3.6.3.1
Cds size378
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462625.7308605-UTR-Ecto-sp13_S_contig1185:16555..165761681462625.7308605-UTR-Ecto-sp13_S_contig1185:16555..16576Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1185 16556..16576 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462625.7406197-CDS-Ecto-sp13_S_contig1185:16576..167891681462625.7406197-CDS-Ecto-sp13_S_contig1185:16576..16789Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1185 16577..16789 +
1681462625.748622-CDS-Ecto-sp13_S_contig1185:17596..177611681462625.748622-CDS-Ecto-sp13_S_contig1185:17596..17761Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1185 17597..17761 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1185.1589.1prot_Ecto-sp13_S_contig1185.1589.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1185 16577..17761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1185.1589.1

>prot_Ecto-sp13_S_contig1185.1589.1 ID=prot_Ecto-sp13_S_contig1185.1589.1|Name=mRNA_Ecto-sp13_S_contig1185.1589.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
MGAHEPNPEAKAGICYVETKSLDGETNLKIRQAIRSTIGRVSTPRDAAAL
KGRVVMEHPNKLIDNFSGTIETTNLTHTVARARARREVIQTRNLLLRGCV
LRNTRWVVGLVLNTGPDTKIVMSSLE
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mRNA from alignment at Ecto-sp13_S_contig1185:16556..17761+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1185.1589.1 ID=mRNA_Ecto-sp13_S_contig1185.1589.1|Name=mRNA_Ecto-sp13_S_contig1185.1589.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1206bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1185:16556..17761+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCCGGTAATTACGCAGGTGATGGGCGCGCACGAGCCTAACCCGGAGGC GAAGGCCGGCATCTGCTACGTCGAGACCAAGTCTCTCGACGGAGAGACTA ACCTCAAGATCCGACAGGCCATCCGGTCGACGATCGGGCGGGTGTCGACG CCGCGCGACGCCGCGGCGCTCAAGGGGCGCGTGGTGATGGAGCACCCGAA CAAGCTGATCGACAACTTCTCGGGGACCATCGAGGTGGAGGGGGCCGGCG AGGACGGCGGGTCTTGCAGGTGTGTTTTTTCAATGTCTTTTGTTGTTGGT AGTGGTGATGGTGGTGGTGTTTTTGTGTTGGTGTTGGTGTCGGTGATGGT GATGCTGTTGCTGTTGCTGTTGTTGCCGTTGTTGTCTGTTGGTGTTGTTG GTGTTGCTGCTGCTGCTGCTGTTGTTGTTACTCTTTTGTTGTTTGTTGGT GCTGCTGTTGTTGTTGCTGTTGCTGCTGCTGTTGTTCTGGTTTGTTTTTC GAGGAGAGCCCCAACAAACCACCCGCTAATCTCTCTCCCCCGAGAACACG CGCACTTGTTCTCCCTGATACGTACACCACCCCTTCCCTCAATCACGGGT TGAGCCTGTGAACAGCATGCATCATCCTAAGGGGTTTCCATGGAAAGGAG GCCGAAACGGCGGCATGTTGACCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCTCACCCACACAACCAAACCAAAACAAACCAAACACAAAA ANNNNNNNNNNGTGTGTGAGGCTAAAAACCGCAATCACTCCTCTGGGGGT TTCCACGAAAAGGGGCCCCAAAGGGGGCCAGTTTTCCCCCCCCCCCCCCC CCCCCTCTCGTCGACGTCGTCGTCTCTGAAAATGTCACACGAACACACAC ATGCTTTGTTGTTTTAGGTTTCCATGGGCAACGTCAAATTCTTTGTCCCC TCCCTCCCCTTTTATTATTTTCACTTTTTACTCTTGAAGTATTTTCATTT GGTCGGCCGGTTGAACGCAATCGATGGTAAATAATGAGAAGACCACAAAT CTCACACACACAGTCGCGCGCGCTCGCGCGCGCAGGGAGGTGATCCAGAC GCGAAACCTTCTGCTCCGGGGCTGCGTGTTGCGGAACACTCGGTGGGTGG TGGGACTCGTCCTCAATACCGGCCCGGACACCAAGATCGTCATGAGCTCT TTAGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1185:16556..17761+

>mRNA_Ecto-sp13_S_contig1185.1589.1 ID=mRNA_Ecto-sp13_S_contig1185.1589.1|Name=mRNA_Ecto-sp13_S_contig1185.1589.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1185:16556..17761+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGCGCACGAGCCTAACCCGGAGGCGAAGGCCGGCATCTGCTACGT
CGAGACCAAGTCTCTCGACGGAGAGACTAACCTCAAGATCCGACAGGCCA
TCCGGTCGACGATCGGGCGGGTGTCGACGCCGCGCGACGCCGCGGCGCTC
AAGGGGCGCGTGGTGATGGAGCACCCGAACAAGCTGATCGACAACTTCTC
GGGGACCATCGAGACCACAAATCTCACACACACAGTCGCGCGCGCTCGCG
CGCGCAGGGAGGTGATCCAGACGCGAAACCTTCTGCTCCGGGGCTGCGTG
TTGCGGAACACTCGGTGGGTGGTGGGACTCGTCCTCAATACCGGCCCGGA
CACCAAGATCGTCATGAGCTCTTTAGAG
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