mRNA_Ecto-sp13_S_contig1185.1587.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1185.1587.1
Unique NamemRNA_Ecto-sp13_S_contig1185.1587.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1185.1587.1 vs. uniprot
Match: A0A6H5KR82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR82_9PHAE)

HSP 1 Score: 323 bits (829), Expect = 1.640e-99
Identity = 168/172 (97.67%), Postives = 170/172 (98.84%), Query Frame = 1 
Query:    1 MAAQQSDVGEGDAPLLRELDGMARNALKTQVEVSGSDDELLTVLAKFRHTLLGIPLPPPAPVDYDQALKDAQRESIEMNGRLFKGNVDELQKTLRGLIDPLVVGDETLTRAVCHDIIRASSRTSSGGDAYAVMAALLSRPAKGDLLTPSGSGSSPIGISVAAADGEVVITVE 516
            MAAQQSDVGEGDAPLLRELDGMARNALKTQVEVSGSDDELLTVLAKFRHTLLGIPLPPPAPVDYDQALKDAQRESIEMNGRLF+GNVDEL KTLRGLIDPLVVGDETLTRAVCHDIIRASSRTSSGGDAYAVMAALLSRPAKGDLLTPSGSGSSPIGIS+A ADGEVVITVE
Sbjct: 1139 MAAQQSDVGEGDAPLLRELDGMARNALKTQVEVSGSDDELLTVLAKFRHTLLGIPLPPPAPVDYDQALKDAQRESIEMNGRLFEGNVDELLKTLRGLIDPLVVGDETLTRAVCHDIIRASSRTSSGGDAYAVMAALLSRPAKGDLLTPSGSGSSPIGISIAGADGEVVITVE 1310
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BLAST of mRNA_Ecto-sp13_S_contig1185.1587.1 vs. uniprot
Match: D7FU20_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU20_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 1.380e-67
Identity = 115/128 (89.84%), Postives = 121/128 (94.53%), Query Frame = 1 
Query:  139 FRHTLLGIPLPPPAPVDYDQALKDAQRESIEMNGRLFKGNVDELQKTLRGLIDPLVVGDETLTRAVCHDIIRASSRTSSGGDAYAVMAALLSRPAKGDLLTPSGSGSSPIGISVAAADGEVVITVETR 522
            F  TLLGI LPPP PVDYDQA KDAQRESI+MNGRLF+GNVDEL +TLRGLIDPLVVGDETLTRAVCHDI+RASSRTSSGGDAYAVMAALLSRPA+GDLLTPSGSGSSPIGISVA+ADGEVVITVE R
Sbjct:   41 FGSTLLGIMLPPPGPVDYDQAWKDAQRESIKMNGRLFEGNVDELLETLRGLIDPLVVGDETLTRAVCHDIMRASSRTSSGGDAYAVMAALLSRPAEGDLLTPSGSGSSPIGISVASADGEVVITVENR 168
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BLAST of mRNA_Ecto-sp13_S_contig1185.1587.1 vs. uniprot
Match: A0A4D9DEA1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DEA1_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.450e-29
Identity = 74/156 (47.44%), Postives = 101/156 (64.74%), Query Frame = 1 
Query:   43 LLRELDGMARNALKTQVEVSGSDDELLTVLAKFRHTLLGIPLPPPAPVDYDQALKDAQRESIEMNGRLFKGNVDELQKTLRGLIDPLVVGDETLTRAVCHDIIRASSRTSSGGDAYAVMAALLSRPAKGDLLTPSGSGSS-PIGISVAAADGEVVI 507
            LL  +DG +R  L+ +V  + + D  LT+L + +  L  + LPPPA VD  QA KDAQRE++ +NGR F G+   LQ  +  L+ PLVV  ET T  +C DI+RASSRT+SGGD+Y +  +LL RP  G+LLTP+ + SS PI I + A +G V I
Sbjct:  625 LLSRIDGRSRLTLQARVHKAATPDMFLTLLHRSQSFLNCLHLPPPAAVDVPQAWKDAQRETVVLNGRSFSGDPSGLQSEMHRLVAPLVVDSETAT-LLCQDILRASSRTASGGDSYVITTSLLVRP--GNLLTPATAASSIPISIHIGAEEGVVDI 777
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BLAST of mRNA_Ecto-sp13_S_contig1185.1587.1 vs. uniprot
Match: K8YUK8_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YUK8_NANGC)

HSP 1 Score: 102 bits (253), Expect = 1.290e-22
Identity = 60/113 (53.10%), Postives = 77/113 (68.14%), Query Frame = 1 
Query:  172 PPAPVDYDQALKDAQRESIEMNGRLFKGNVDELQKTLRGLIDPLVVGDETLTRAVCHDIIRASSRTSSGGDAYAVMAALLSRPAKGDLLTPSGSGSS-PIGISVAAADGEVVI 507
            PPA VD  QA KDAQRE++ +NGR F G+   LQ  +  L+ PLVV  ET T  +C DI+RASSRT+SGGD+Y +  +LL RP  G+LLTP+ + SS PI I + A +G V I
Sbjct:    1 PPAAVDVLQAWKDAQRETVVLNGRSFSGDPSGLQSEMHRLVAPLVVDSETAT-LLCQDILRASSRTASGGDSYVITTSLLVRP--GNLLTPAMAASSIPISIHIGAEEGVVDI 110
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BLAST of mRNA_Ecto-sp13_S_contig1185.1587.1 vs. uniprot
Match: A0A7S1UIL6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIL6_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.210e-21
Identity = 69/165 (41.82%), Postives = 93/165 (56.36%), Query Frame = 1 
Query:   25 GEGDAP--------LLRELDGMARNALKTQVEVSGSDDELLTVLAKFRHTLLGIPLPPPAPVDYDQALKDAQRESIEMNGRLFKGNVDELQKTLRGLIDPLVV-GDETLTRAVCHDIIRASSRTSSGGDAYAVMAALLSRPAKG----DLLTPSGSGSSPIGISV 480
            GEG  P        L+   D    NALKTQV++      LLTV+  FR  L  +PLP P  V  +QALKDA RE + +NG   +GN D L++T+R  +  LV   ++ L  +V  D++RASSRT+ GGDAY ++ +L  R A      DLLTPS     PI ++V
Sbjct:  809 GEGSVPDNAPPEVRLVSLWDVQTLNALKTQVQLCKERRALLTVMHLFRDFLHRVPLPRPLAVQAEQALKDAGRERVRVNGVPVEGNADVLRETVREALLSLVDDSNDVLVNSVVTDVMRASSRTAHGGDAYLILQSLFVRQADDGMPVDLLTPSPEQPPPIEVTV 973
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BLAST of mRNA_Ecto-sp13_S_contig1185.1587.1 vs. uniprot
Match: W7TIK0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIK0_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.030e-9
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:  289 LIDPLVVGDETLTRAVCHDIIRASSRTSSGGDAYAVMAALLSRPAKGDLLTPSGSGSS-PIGISVAAADGEVVI 507
            L+ PLVV  ET T  +C DI+RASSRT+SGGD+Y +  +LL RP  G+LLTP+ + SS PI I + A +G V I
Sbjct:    4 LVAPLVVDSETAT-LLCQDILRASSRTASGGDSYVITTSLLVRP--GNLLTPAMAASSIPISIHIGAEEGVVDI 74
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1185.1587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KR82_9PHAE1.640e-9997.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU20_ECTSI1.380e-6789.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4D9DEA1_9STRA1.450e-2947.44Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
K8YUK8_NANGC1.290e-2253.10Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A7S1UIL6_9STRA1.210e-2141.82Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
W7TIK0_9STRA1.030e-954.05Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1185contigEcto-sp13_S_contig1185:177..2844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score63.9
Seed ortholog evalue8.4e-08
Seed eggNOG ortholog36331.EPrPI00000023414
Model size525
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs1MDHU@121069,2CWNU@1,2RUWM@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_001130.1
Cds size525
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462625.5847232-CDS-Ecto-sp13_S_contig1185:176..3681681462625.5847232-CDS-Ecto-sp13_S_contig1185:176..368Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1185 177..368 -
1681462625.5953307-CDS-Ecto-sp13_S_contig1185:1365..14671681462625.5953307-CDS-Ecto-sp13_S_contig1185:1365..1467Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1185 1366..1467 -
1681462625.6113856-CDS-Ecto-sp13_S_contig1185:2259..24001681462625.6113856-CDS-Ecto-sp13_S_contig1185:2259..2400Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1185 2260..2400 -
1681462625.6226044-CDS-Ecto-sp13_S_contig1185:2754..28441681462625.6226044-CDS-Ecto-sp13_S_contig1185:2754..2844Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1185 2755..2844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1185.1587.1prot_Ecto-sp13_S_contig1185.1587.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1185 177..2844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1185.1587.1

>prot_Ecto-sp13_S_contig1185.1587.1 ID=prot_Ecto-sp13_S_contig1185.1587.1|Name=mRNA_Ecto-sp13_S_contig1185.1587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=175bp
MAAQQSDVGEGDAPLLRELDGMARNALKTQVEVSGSDDELLTVLAKFRHT
LLGIPLPPPAPVDYDQALKDAQRESIEMNGRLFKGNVDELQKTLRGLIDP
LVVGDETLTRAVCHDIIRASSRTSSGGDAYAVMAALLSRPAKGDLLTPSG
SGSSPIGISVAAADGEVVITVETR*
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mRNA from alignment at Ecto-sp13_S_contig1185:177..2844-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1185.1587.1 ID=mRNA_Ecto-sp13_S_contig1185.1587.1|Name=mRNA_Ecto-sp13_S_contig1185.1587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2668bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1185:177..2844- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGCTCAGCAGAGCGACGTGGGTGAGGGGGACGCTCCTCTCTTGCG
CGAGCTCGACGGCATGGCTCGGAACGCGCTCAAGACCCAGGTGAGCACGG
GGAGTGCGACGGGAGGTGACAGCGGCGGCGGCAACGACGTGTCCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTCGATGCGCGCACGCACGTGTTGATTGGT
GGCTTGCGGCGTAAATTTTCTCGGCTTTTTTTTTTCTGTCGTAGACGGGG
GAGGGGGAGACCCAAACCGCGCGTGCTGGTCTTTCGGCCCGCGGTTTCAC
GGCGCTTGCCTCACTCTCGCCATCCTTCTTCTCGCTCATCTGGTCCGATC
TTGCCCGCGCCCCAATCGGACTGCACCGAAGCGACGGCGTCGGCCCCGCC
TAACGGTTCGTCGATTTTTTTTTTTTTTGGTGTAACATCGTCAGGTGGAG
GTCAGTGGTTCCGATGACGAGCTGCTCACGGTGCTCGCCAAGTTTCGGCA
CACGCTGCTCGGCATCCCGCTGCCGCCGCCGGCACCGGTGGACTACGACC
AGGCCTTGAAGGACGCCCAGAGGGAATCAATAGAGGTAGGTCTTTGTTGG
GCACCGGGGACGGGGAAGGGGGGGGGCGGGCGTTGAAGGCAGGCGTTGAA
GGGCGCGCAGTGGGAATCGATAAAGGTCTATTGGGAACCGGGAGGTCGAG
CGATGGAGCATAACGATTTTCCCGGAAATTATGCGTGTTTTGTGTGTGTC
TTTTTTCCATGCACATGTCTGTTGGATTCTGGCGGGGCTCCAGTACGGGG
CCGCTTCTGTGCTCTGGCCTAGTGTGACTGAATTTGCATGACTTTAGTCC
GTGCGGTCTGAGCTGAGAAATTGAGTTCGTTTCGGCATGATGCCTCGGCG
ATTGGTGCCTGGTTTTTATGGCAACGATTGTTTCTTCTCCCATCTGTTCT
AAGGAGCCAGAGGAACCCCCGCTGCTGTCGGCTTGTGTGCTTTTTTTCTA
GTCCGCCCGGATTTTACGTTGACGGTCGTTGCCGGGTTTCTTTTCCCCCT
TGATCCCGTTTGTTCTGCGGGGCAACAACGGAACAAAAACCAGAATCTCT
CTATCGATCCACATATGCAGTTCAACGTTTTTTCTAGCTGCAGGCGCATG
CCCCCTTCGAATAACCTAGCTTGCCATTCACCCCGAGCGCGTAGTTCCAC
CGCTACCTGGTTGTGTATGCTCTTGTCGCCAGACGTCTTCTCGTCATACC
TAGCGGTAACTTCAATTCACACCTGTTGCCGTATTTTTTTTCTCAAGAGG
TGTGCTTGTGTTTTCTAATCGTCGTCGTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCGTCGTGGTCGTGGTGGTACAGATGAACGGACGGCTGTTCAAGGG
CAACGTGGACGAGCTTCAGAAGACGCTGCGCGGGCTGATAGACCCGCTCG
TGGTGGGGGACGAGACCCTGACGAGAGCGGTGCGTGAGGATGTCGTCGTA
ACCGTCGTAGCCGCGTGTGCCTCTCCAAGTAGTCGCGTCGATTCTGCGCG
AACCGGCTGACCAATGAGAAGACGTCGGTCTCAACACGTGTTTACGTGTT
GGTGTGCGATCTGTATTCGTCATTATTGGTATTGGAAGGATCGACCGTGC
TAGCCGGCTGACCAATGAGAAGACGCCAGTCTCAGTGCGGCTGAGAACAG
AACATGCTTCTTAAGGCCGTATGGTCTGGGAGCCTGTGAGGGGGTAGTCA
TGGAGGAGGCTAAGCTGCTCTCTCCAGACCGAAGACAGAAACGGTAGCAA
ACGAGGAAAACTGTGTGTCTACCATGGCTAAGGCTTGTACTTTTGTACGT
ACTCGCGGTCGTTCCGGCCCCCTGTTCATGTTGTTGCTTCATCTATTTTC
TTTGTGGTGTGCACTACTCTTGAATGGTGTCGTTTTGTGTGTGTTTGATC
GTGTGAAGTATTTTTTTAGTGAGCAATGGCCACGCTTACCAGCTGACCAA
TGAAAAGACGTCTTACCGACGGGTAAGGAATGACGATCCTTGAAAGGGAG
GCGACCAAGATTTGAATTTTTCGCAACGCGCTGAACGCGAATGTGTGTGT
GTCTTGCTTTCGGGCGCACTTGCGCTCTTTTTGAGAGTCTAAACCTTGCT
GGGAATGGTGAGGGACAGTATTTTTTTTTGTTGGTATATTCCTCCGGTTG
TAACGGTATGTAAATGTTTTTCGGGCTCATGGTACGGAACGCATCTGAAA
CAAATGTCATTGGGGCACTTCGTTACTATATGTGTATGGTCGGAGGAATT
TTTTCTTCTTGTTTTCGCTTTGGTCTTTGGTCGCCAACCAGCGCAATGTA
CTCTAGATAAATCACGGAATCGCTCACCCACGTCCTTCTTTTTTTTTTGT
TGCTCATGTTTCGGATGTGCTGCGTTTTTGGGCGTGGGTTCTCGTGGGCC
CTTGTGGTGGGTTCTTGTGGAAGCAGGTGTGCCACGACATCATACGCGCG
TCGAGTCGGACCTCCTCCGGCGGCGACGCCTACGCGGTCATGGCGGCTCT
GCTGTCCAGGCCCGCGAAGGGGGACCTGCTCACTCCGTCAGGGTCGGGGT
CTTCCCCGATCGGCATCAGCGTCGCCGCTGCGGACGGAGAGGTCGTCATC
ACCGTAGAGACCCGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1185:177..2844-

>mRNA_Ecto-sp13_S_contig1185.1587.1 ID=mRNA_Ecto-sp13_S_contig1185.1587.1|Name=mRNA_Ecto-sp13_S_contig1185.1587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=525bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1185:177..2844- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGCTCAGCAGAGCGACGTGGGTGAGGGGGACGCTCCTCTCTTGCG
CGAGCTCGACGGCATGGCTCGGAACGCGCTCAAGACCCAGGTGGAGGTCA
GTGGTTCCGATGACGAGCTGCTCACGGTGCTCGCCAAGTTTCGGCACACG
CTGCTCGGCATCCCGCTGCCGCCGCCGGCACCGGTGGACTACGACCAGGC
CTTGAAGGACGCCCAGAGGGAATCAATAGAGATGAACGGACGGCTGTTCA
AGGGCAACGTGGACGAGCTTCAGAAGACGCTGCGCGGGCTGATAGACCCG
CTCGTGGTGGGGGACGAGACCCTGACGAGAGCGGTGTGCCACGACATCAT
ACGCGCGTCGAGTCGGACCTCCTCCGGCGGCGACGCCTACGCGGTCATGG
CGGCTCTGCTGTCCAGGCCCGCGAAGGGGGACCTGCTCACTCCGTCAGGG
TCGGGGTCTTCCCCGATCGGCATCAGCGTCGCCGCTGCGGACGGAGAGGT
CGTCATCACCGTAGAGACCCGGTGA
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