mRNA_Ecto-sp13_S_contig11847.1585.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11847.1585.1
Unique NamemRNA_Ecto-sp13_S_contig11847.1585.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11847.1585.1 vs. uniprot
Match: D7FU60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU60_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 2.550e-80
Identity = 137/164 (83.54%), Postives = 142/164 (86.59%), Query Frame = 2
Query:  650 LRHALSATCFDAQVDTGSKRSSLWKRAQRALPSEMVMRRCQDVGGPVTLAQDSGDSKIYRQTPKALKSGAGFQQSRSHGRHFLVLVISAMVVGVAESKLVEFQSEFKCMWYDLPHPVQFAMLLMTPALFFGINRIFGKLDKAAHARLSRAVTAWMDEKRQVHRI 1141
            LR         ++V TGSKRSSLWKRAQ ALPSEMVM   QDVG P+TLAQ  G SKIYRQTPKALK GAGFQQS SHGRHFLVLVISAMVVGVAESKLVEFQS FKCMWYDLPHPVQFA+LLM PALFFGINRIFGKLDKAA+ARLSRAVTAWMDEKRQVHRI
Sbjct:   58 LRSHADTAVHTSEVCTGSKRSSLWKRAQPALPSEMVMLGSQDVGRPLTLAQAPGHSKIYRQTPKALKRGAGFQQSGSHGRHFLVLVISAMVVGVAESKLVEFQSGFKCMWYDLPHPVQFAVLLMMPALFFGINRIFGKLDKAAYARLSRAVTAWMDEKRQVHRI 221          
BLAST of mRNA_Ecto-sp13_S_contig11847.1585.1 vs. uniprot
Match: A0A6H5KYN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYN8_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 6.380e-62
Identity = 108/130 (83.08%), Postives = 114/130 (87.69%), Query Frame = 2
Query:  752 MVMRRCQDVGGPVTLAQDSGDSKIYRQTPKALKSGAGFQQSRSHGRHFLVLVISAMVVGVAESKLVEFQSEFKCMWYDLPHPVQFAMLLMTPALFFGINRIFGKLDKAAHARLSRAVTAWMDEKRQVHRI 1141
            MVM  CQDVG   TLAQ SG SK +RQTPKALK GAGFQQS SH RHFLVLV SAMVVGVAESKLVEF+S FKC+WYDLPHPVQFA+LLM PALFFGIN IFGKLDK A+ARLSRAVTAWMDEKRQ+HRI
Sbjct:    1 MVMLGCQDVGRSATLAQGSGYSKSFRQTPKALKRGAGFQQSGSHDRHFLVLVTSAMVVGVAESKLVEFRSGFKCIWYDLPHPVQFAVLLMMPALFFGINWIFGKLDKVAYARLSRAVTAWMDEKRQLHRI 130          
BLAST of mRNA_Ecto-sp13_S_contig11847.1585.1 vs. uniprot
Match: D7G956_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G956_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 3.930e-26
Identity = 56/79 (70.89%), Postives = 67/79 (84.81%), Query Frame = 2
Query:  908 ISAMVVGVAESK-LVEFQSEFKCMWYDLPHPVQFAMLLMTPALFFGINRIFGKLDKAAHARLSRAVTAWMDEKRQVHRI 1141
            +S  VVGVAES  LV+  S FKCMWY+L HPVQFA+LL+ PALF G+NR+FG LDKAA+ARLSRAV+AWM+EKRQV +I
Sbjct:    1 MSVTVVGVAESNMLVDLPSGFKCMWYNLSHPVQFAVLLVMPALFLGVNRMFGMLDKAAYARLSRAVSAWMNEKRQVDQI 79          
BLAST of mRNA_Ecto-sp13_S_contig11847.1585.1 vs. uniprot
Match: A0A6H5JLZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLZ1_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 8.140e-23
Identity = 52/84 (61.90%), Postives = 65/84 (77.38%), Query Frame = 2
Query:  890 HFLVL-VISAMVVGVAES-KLVEFQSEFKCMWYDLPHPVQFAMLLMTPALFFGINRIFGKLDKAAHARLSRAVTAWMDEKRQVH 1135
            H LV  V+SA  V + ES +LVEF S F+CMW DLPHP QFA++ +  AL FG++RIFGKLD AA+ARLSRAVTAW++E+R  H
Sbjct:   21 HLLVATVMSATTVKIVESNRLVEFPSVFRCMWNDLPHPAQFAIIFLMLALLFGVHRIFGKLDDAAYARLSRAVTAWINERRHAH 104          
BLAST of mRNA_Ecto-sp13_S_contig11847.1585.1 vs. uniprot
Match: D7G968_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G968_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 3.510e-17
Identity = 49/91 (53.85%), Postives = 63/91 (69.23%), Query Frame = 2
Query:  833 TPKALKSGAGFQQSRSHGRHFLVLVISAMVVGVAES-KLVEFQSEFKCMWYDLPHPVQFAMLLMTPALFFGINRIFGKLDKAAHARLSRAV 1102
            T KA K   G ++ RSH    +   +SAM+VG+ ES +LVEF S   C W DLPHP QFA++ +  AL FG+++IFGKLD AA+ARLSRAV
Sbjct:    7 TRKARKRRPGLRR-RSH--LLVATAMSAMIVGIVESNRLVEFPSGVMCTWNDLPHPAQFAVIFLMLALLFGVHQIFGKLDSAAYARLSRAV 94          
BLAST of mRNA_Ecto-sp13_S_contig11847.1585.1 vs. uniprot
Match: D7G963_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G963_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 5.930e-15
Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = 2
Query:  920 VVGVAESKLVEFQSEFKCMWYDLPHPVQFAMLLMTPALFFGINRIFGKLDKAAHARL 1090
            +V V  ++L+EF S FKC WY LPHPVQF +L++ PAL +G+NR+F +L+KA+HARL
Sbjct:    1 MVLVENNRLLEFSSRFKCTWYGLPHPVQFMVLILMPALLYGVNRLFDRLEKASHARL 57          
BLAST of mRNA_Ecto-sp13_S_contig11847.1585.1 vs. uniprot
Match: D7G973_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G973_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.250e-13
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 2
Query:  887 RHFLVLVISAMVVGVAES-KLVEFQSEFKCMWYDLPHPVQFAMLLMTPALFFGINRIFGKLDKAAHARLS-RAVTAWMDEK 1123
            R  L+   SA+ + + ES +L+EF S FKC WY LPHPVQF +L++ PAL +G+NR+F +L+KA+HA L   A  A ++EK
Sbjct:   25 RFALLFATSALNMVLLESNRLLEFPSGFKCTWYGLPHPVQFTILILMPALLYGVNRLFDRLEKASHAGLCPHATAACVEEK 105          
BLAST of mRNA_Ecto-sp13_S_contig11847.1585.1 vs. uniprot
Match: A0A6H5JJ82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ82_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.410e-13
Identity = 38/85 (44.71%), Postives = 56/85 (65.88%), Query Frame = 2
Query:  884 GRHFLVLVISAMVVGVAESK-LVEFQSEFKCMWYDLPHPVQFAMLLMTPALFFGINRIFGKLDKAAHARLSRAVTAWMDEKRQVH 1135
            GR  ++ +IS   V V E K L+EF S F+CMW DLPH +QFA+LL+   + +G+NR+F K D+A + RL+ A    ++E+R  H
Sbjct:   56 GRRAMLALISVAHVDVVEGKWLIEFPSGFRCMWNDLPHGLQFAILLLMLGILYGVNRLFDKADEAIYTRLTCATAGLLNERRLHH 140          
BLAST of mRNA_Ecto-sp13_S_contig11847.1585.1 vs. uniprot
Match: A0A6H5L6K1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6K1_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 6.930e-13
Identity = 35/85 (41.18%), Postives = 56/85 (65.88%), Query Frame = 2
Query:  884 GRHFLVLVISAMVVGVAESK-LVEFQSEFKCMWYDLPHPVQFAMLLMTPALFFGINRIFGKLDKAAHARLSRAVTAWMDEKRQVH 1135
            GR  ++ ++SA+ V + E K L+EF   F+C+W DLPH +QFA+L +   + +G+NR+F K D+A H RL+ A    ++E+R  H
Sbjct:   58 GRRAILALVSAVHVDLVEGKWLIEFPPRFRCIWNDLPHGLQFAILFLMLGVLYGVNRLFDKADQAMHTRLTCATARLLNERRHHH 142          
BLAST of mRNA_Ecto-sp13_S_contig11847.1585.1 vs. uniprot
Match: A0A6H5L9J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9J2_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.410e-12
Identity = 38/86 (44.19%), Postives = 55/86 (63.95%), Query Frame = 2
Query:  887 RHFLVLVISAMVVGVAE-SKLVEFQSEFKCMWYDLPHPVQFAMLLMTPALFFGINRIFGKLDKAAHARLSRAVTAWMDEKRQVHRI 1141
            R  L+  I+A+  G+ + S LV+  S FKC WY+L HP QFA+L +   + + INR+F ++DK  +ARLS A  AWMDE R   ++
Sbjct:  124 RRILLATIAALNAGLVDGSLLVDLPSGFKCAWYNLEHPAQFAILFLMVGVVYFINRLFNEVDKVMYARLSCATEAWMDEIRHSRQV 209          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11847.1585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FU60_ECTSI2.550e-8083.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYN8_9PHAE6.380e-6283.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G956_ECTSI3.930e-2670.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLZ1_9PHAE8.140e-2361.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G968_ECTSI3.510e-1753.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G963_ECTSI5.930e-1557.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G973_ECTSI1.250e-1349.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJ82_9PHAE2.410e-1344.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6K1_9PHAE6.930e-1341.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L9J2_9PHAE2.410e-1244.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11847contigEcto-sp13_S_contig11847:2..3836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2351
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-13_003650.1
Cds size393
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11847.1585.1prot_Ecto-sp13_S_contig11847.1585.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11847 806..2615 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462625.39224-UTR-Ecto-sp13_S_contig11847:1..4371681462625.39224-UTR-Ecto-sp13_S_contig11847:1..437Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11847 2..437 +
1681462625.4031882-UTR-Ecto-sp13_S_contig11847:490..8051681462625.4031882-UTR-Ecto-sp13_S_contig11847:490..805Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11847 491..805 +
1681462625.4858408-UTR-Ecto-sp13_S_contig11847:2615..37821681462625.4858408-UTR-Ecto-sp13_S_contig11847:2615..3782Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11847 2616..3782 +
1681462625.4952118-UTR-Ecto-sp13_S_contig11847:3796..38361681462625.4952118-UTR-Ecto-sp13_S_contig11847:3796..3836Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11847 3797..3836 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462625.412371-CDS-Ecto-sp13_S_contig11847:805..9271681462625.412371-CDS-Ecto-sp13_S_contig11847:805..927Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11847 806..927 +
1681462625.42144-CDS-Ecto-sp13_S_contig11847:1725..17931681462625.42144-CDS-Ecto-sp13_S_contig11847:1725..1793Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11847 1726..1793 +
1681462625.4328687-CDS-Ecto-sp13_S_contig11847:2165..22451681462625.4328687-CDS-Ecto-sp13_S_contig11847:2165..2245Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11847 2166..2245 +
1681462625.458661-CDS-Ecto-sp13_S_contig11847:2492..26151681462625.458661-CDS-Ecto-sp13_S_contig11847:2492..2615Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11847 2493..2615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11847.1585.1

>prot_Ecto-sp13_S_contig11847.1585.1 ID=prot_Ecto-sp13_S_contig11847.1585.1|Name=mRNA_Ecto-sp13_S_contig11847.1585.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
MVMRRCQDVGGPVTLAQDSGDSKIYRQTPKALKSGAGFQQSRSHGRHFLV
LVISAMVVGVAESKLVEFQSEFKCMWYDLPHPVQFAMLLMTPALFFGINR
IFGKLDKAAHARLSRAVTAWMDEKRQVHRI*
back to top

mRNA from alignment at Ecto-sp13_S_contig11847:2..3836+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11847.1585.1 ID=mRNA_Ecto-sp13_S_contig11847.1585.1|Name=mRNA_Ecto-sp13_S_contig11847.1585.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3835bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11847:2..3836+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCTGGCTCTTCTGGGCACCATAGCAAATCATCATACGCGTGCAGTCCGA AGTCGTTGTTTTTCTCCCGACACCTCCTCGTTTGGTCTGCAGTCTCTGCA TAACAAGAATAGCAGTAGTAGGTGTGTTGTTGGGGATAGGCCGTTAGGCA GTGTACGGGTGTGCTGCCTCGAATGTGTTGCGATGGCCGGGGGTCTTGTG AGGGGAAACAGGCAACCCTTGTCGAGTGACCTGCTGGGTGCCTACTGGTG ATATGCTGCTCGATCCTTGTCTGGCTGCAAGCAAGAGCGAGGGGTTGGGC GCTTACTTCAAGAAAAGACTTCTCCACGGCAGTGTGGTCAGATTTCTCTA TTCCAATTCCTTCCATGTATCATCGCGACGGTGGGCGAATGGCGCCGCAG ACTTCCACCATCCTTCGCCCGACAATTGCAAGAAATTCACAACAATCCCT TCGAAGTGGAGAGCAAAGTTTGATCGGCGTTTATTGGCGCATCGTTTCTC CCTGTGCAAAAGAGTGGGTCGCGCCGCACGCTGACGTGAACCATAGTTCC GTTTCAACGCCATTCACGCAGACCTTTTTGTCGTTGGTTCTCTCGCATGG GCGCAGAGAACTGTGCGTGTTCTCGGCAAGTGATCCAGCCGCAAGCGTCT CGCTCGTCTTTGAAAGGCGTGTTCGGTGGATTTTCCGCCCCTGTGTCTAT AATTGCGCCATGCCCTCTCGGCAACCTGCTTTGATGCCCAGGTTGATACT GGCAGCAAACGATCGTCGCTGTGGAAACGAGCGCAGCGTGCACTCCCATC GGAAATGGTGATGCGACGTTGCCAGGATGTGGGTGGCCCAGTGACTTTAG CCCAAGACTCTGGCGATTCGAAGATCTACCGGCAGACCCCAAAGGCCCTC AAGAGTGGTGCCGGTTTCCAACAAAGGTACACGCTCAAGCCAGGTTCGCA GTGACGTGATTTACCCGTTTGCACCTGGGAAGCGCGTGCGGGAACATTAC ATGTGTGTATGCTCTCTAACGCCGTGGCGAAGAATAGGAGCCTGGATGTA GATTTGAGTTACCGAGAACGCGCGGACATTTTGAATTCTACCGCACAGGG GGAATTGTGGGTGGAGGGCAGGGGAGCTTGATGACGAGCTTTCTTCGTGT TTGCTATCGAAGTCCTCCGCTCTCGCATACGCTCCCTATGTAGCGTCGAG ACTTGTCTTGAGGGAGGCGACCGCTTTGAAGACACTCTCGTCTGGCCAGC ATGGGTCTGAATTTTGGCGTTGGTCGTCATCACACACCAGGCAATGATGC TTGAGCGCATCCGTATGGCACACGTAGCTGTTGTTGTGTTTTGAGACCTG ACGGCTTGAGGCCGTCCGAGGTTCTATTCACCCTCGCTGCTTGCCGACCG CCTTCGCACAGTACCGTCGCTTCCCCCCGCCAGGGGATATCGGTAAACGA CAGATTCCCGCTCAATGTAGTGCGCGCTGGCCGGGTCTTGTGTACTCTTC TAGTGGTTGACATGAGGCCTCTCTGTATCCGCGAAGGTATCCACACGCTC CCTACACGCCCACCGCTTTCGTACAGCAGCTCCGTTTTGCCTGGCGACAT GATGTCGCTAAAACGAGAGAAATCCGCTCAATGTGGACAGATACCAGTCA CTGTAGTGGCTGGGTTTTGTTTTTCTCGCGGTTGAGCTTGCGCCCTCTCT GTACCCGCGCGTCTGTATCACCAGTAGATCTCACGGCCGTCACTTCCTGG TGTTGGTGATATCAGCCATGGTCGTGGGAGTCGCGGAAAGCAGTAAGTGA CGCACCCGTACTGCTTGTTGGAATCGGCCCCCGTTGGTCTATCCACGTGC CGTGAGTACTTTTTTTTAAGGACAGGGGACCTCGGTTGTATGTGTGGTCA TCAGTGTTATTGCTGGACGCTAGTGTATTCCTGGTATGTGTTTGGCGCAT GTACTGCAGGGGAACGCCATTTTCAGGTAGCTAGGTTTTTTGTATTATGT TGTGCTGTAGCGTCGACCGTGCAAACCGACTGCCTACTTTGAAGGGGCTA GTCGCACTGTGTGTGTGTTCGCGATCGTCTGTGTGTTTCTCGCTGATATC GGGCAACGACATGCATGCGTGAAATCGCGGCTCCTTCACCTGCGAATTTG CTGTGCCATTGCAGAGCTGGTTGAGTTCCAGTCGGAGTTCAAGTGCATGT GGTACGACCTGCCGCACCCTGTTCAGTTTGCGATGTTGCTGATGGTGAGT GAATGCCCTCCTTGGTAGAGCATACCCATATGCTTCAACGTGGATCAGTC CGACTGGTGGAGAGTGCTGGTACTGATGCTTTGTCTCGGCGTCTGCACGC CTGCTCTGTTCCTGCCGTCCGCGTTTGACGCGCAAAGCAAGGAGGCAGGA CCATCGATGGCGATAGGACAGGCTCACATGTATCATAATTCGAGCTCATG TATTTTCTCTGGCGCACCCGATGCTGCTTCGAATCCCGCAGACGCCCGCG CTTTTCTTCGGAATCAACCGGATCTTCGGCAAGCTCGACAAAGCCGCGCA CGCTCGGCTGTCTCGCGCTGTGACTGCTTGGATGGATGAGAAAAGGCAGG TGCATCGGATATAATCCGAAACCACGCGACTCAATGCTCAGGACTTGCGT GCCCTGTTCGAATTGGGAGTACTTTTTGGCCTCATAAGCAAACCTTCGCA GATCGAAGAACAGCAAAAATGGGCAGTTTGTGGTATGCGTTTTGTCTTAC AAAGTCTTCAGGCGGCTTACTTTTATGCCAATATTAGAACAACGGTCAGG TCAGGCGTGTTGCTAATGTTGGTACTCGCTGTACATTTTTCCTCGTTTCC TTCTTTTGTGCGTTCCATTATGGCGAGCGACCGCATGGCATTGCTGGTGC TCGCTGGTGGCTTTAATTTATCGGAGGTGCGTGCCGAGAGGGTTGGAAAC ATTTGTTTTCATGTTCCATGGTGTCGAAAGTTGCTCATTGCCGTACTTGA ATCCAGGCTGCAGTCTACCAGACACCGGGACGCCAGCCATCAACTCAGAA GCCGTTGGGATTTTATTTAGTTTTACCAGGGGGGCAAAGCGCCTGTTTTT TTGGGGAGGCAAAGCGCCAAGCGTCTGTAGGACGTGAACGCATCTAGGCA TAACAGGACGTGCATCTAGTAGGAGGACTTTTCGATGTTTTGTATATTCT TTTGTTTGGTGGGTTGCATGACGTAGTGGTAGCAGGTTGCATCGTAGTTG TTGCTCTGATGTGGCGTGGCGAAATGCTTCGTACGATTGGTCGGGTGTGC CTCTGAATGCCACGACCTGATGAGTGGTGATCATCCGCGGTGTGTCTATT TTCTCGTGTTTTTGCGTGGGTTCCTCCTTTTGAGTAGTCCTCGGGCATTT CGGGCTTGTACGATGCTTGTGGTCGTCACACACCCTGTAATGCTTTCTGC GAACGGCCGCGGTATCCATAGCTACATGGGGACTTTTGACCAATGGGGAG TTTTCTGAGCATGGAATGTCGCGTTGGTGGCGCCGACCGTTTCGAGGGCC CCCGTTGCTGACAGATTCAGGATTCCTTCGCTACCGGATCATGTCTCGAG CATCGAAACGCTGACACAACGGCGGGTGCTCCGAGCCGATTACCCAGATT GTCGTCTTCGTTTTTTTCGCCTCGGGGTAGAGAGAGGGATACAGTGGGTG GATTTCGAATGAATCACTCACCCAGCAGGGTTTGGGTGGCCGGTGATTGT CGACGCTAAAATCTTTTTGAAATGAGCGAGTGTGAAATGAGCGAGTGCAA CACGCGTCGTACGAACGCACAAGCACGCCTAGAGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11847:2..3836+

>mRNA_Ecto-sp13_S_contig11847.1585.1 ID=mRNA_Ecto-sp13_S_contig11847.1585.1|Name=mRNA_Ecto-sp13_S_contig11847.1585.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11847:2..3836+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGATGCGACGTTGCCAGGATGTGGGTGGCCCAGTGACTTTAGCCCA
AGACTCTGGCGATTCGAAGATCTACCGGCAGACCCCAAAGGCCCTCAAGA
GTGGTGCCGGTTTCCAACAAAGTAGATCTCACGGCCGTCACTTCCTGGTG
TTGGTGATATCAGCCATGGTCGTGGGAGTCGCGGAAAGCAAGCTGGTTGA
GTTCCAGTCGGAGTTCAAGTGCATGTGGTACGACCTGCCGCACCCTGTTC
AGTTTGCGATGTTGCTGATGACGCCCGCGCTTTTCTTCGGAATCAACCGG
ATCTTCGGCAAGCTCGACAAAGCCGCGCACGCTCGGCTGTCTCGCGCTGT
GACTGCTTGGATGGATGAGAAAAGGCAGGTGCATCGGATATAA
back to top