mRNA_Ecto-sp13_S_contig11844.1584.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11844.1584.1 vs. uniprot
Match: A0A6H5JGW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW6_9PHAE) HSP 1 Score: 541 bits (1393), Expect = 4.930e-179 Identity = 312/374 (83.42%), Postives = 316/374 (84.49%), Query Frame = 1
Query: 1 GRPPTRGEPVWVETVLQSHEGSVVDDLSAAFELAEAGVSADGVAGRREEMAVRGSGVDGGGGNGALLVHGPPGVGKTRLVEALAARLGCRLVKLSPGRLAAIGGIHADRVLSEAFQFCRRCVSRRVVLLLDSIDRLTPAARGNVGASRGEVDAGMLNAFVLAVEQGRRDPRWRGRVAVVGVTSWPDQVHPTARRCAGQEVLVLPPRH-----------------------------------PLRARILSRALLHTGKWEEAHTDKGGKSPATSAQQDAFEEVVGLCQGFTAGDMCAVAXXXXXXXXXXXSRLPDNDDGGRQTAEQRALARAEALRAGFRQVRQRVAAGRGXXXXXXXXXASVAGVPRVRWSEV 1017
GR PTRGEPVWVETVL+SHE SVVDDLSAAFELAE GVSADGVAGRREEM VRG G GALLVHGPPGVGKTRLVEALAARLGCRLVKLSPGRLAAIGG+HADRVLSEAFQ+C RCVSRRVVLLLDSIDRLTPAARGNVGASRGEVDAG LNAFVLAVEQGRRDPRWRGRVAVVGVTSWPDQVHPTARRCAGQEVLVLPPRH PLRARILSRALLHTGKWEEA D+GGKSPAT AQQDAFEEVVGLCQGFTAGDMCAVA XXXXXX SRLPDNDD GRQTAEQRALARAEALRAGFRQVRQRVAAGRGXXXXXXXXXASVAGVPRVRWSEV
Sbjct: 566 GRRPTRGEPVWVETVLRSHEASVVDDLSAAFELAETGVSADGVAGRREEMTVRGGGXXXXX-XGALLVHGPPGVGKTRLVEALAARLGCRLVKLSPGRLAAIGGVHADRVLSEAFQYCHRCVSRRVVLLLDSIDRLTPAARGNVGASRGEVDAGKLNAFVLAVEQGRRDPRWRGRVAVVGVTSWPDQVHPTARRCAGQEVLVLPPRHVSSLLFAARTTVAVAVPLSPRPRSIRTPATGERSQPLRARILSRALLHTGKWEEARADEGGKSPATKAQQDAFEEVVGLCQGFTAGDMCAVAAXXXXXXR---SRLPDNDDEGRQTAEQRALARAEALRAGFRQVRQRVAAGRGXXXXXXXXXASVAGVPRVRWSEV 935
BLAST of mRNA_Ecto-sp13_S_contig11844.1584.1 vs. uniprot
Match: D7FVM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM1_ECTSI) HSP 1 Score: 385 bits (988), Expect = 2.820e-126 Identity = 235/339 (69.32%), Postives = 240/339 (70.80%), Query Frame = 1
Query: 1 GRPPTRGEPVWVETVLQSHEGSVVDDLSAAFELAEAGVSADGVAGRREEMAVRGSGVDGGGGNGALLVHGPPGVGKTRLVEALAARLGCRLVKLSPGRLAAIGGIHADRVLSEAFQFCRRCVSRRVVLLLDSIDRLTPAARGNVGASRGEVDAGMLNAFVLAVEQGRRDPRWRGRVAVVGVTSWPDQVHPTARRCAGQEVLVLPPRHPLRARILSRALLHTGKWEEAHTDKGGKSPATSAQQDAFEEVVGLCQGFTAGDMCAVAXXXXXXXXXXXSRLPDNDDGGRQTAEQRALARAEALRAGFRQVRQRVAAGRGXXXXXXXXXASVAGVPRVRWSEV 1017
GRPPT GEPVWVETVL+SHE SVVDDLSAAFELAE GVSA GVAGRREEM VRG G GGG NGALLVHGP GVGKTRLVEALAARLGCRLVKLSPGRLAAIGG+HADRVLSEAFQ+CRRCVS RVVLLLDSIDRLTPAARGNVGASRGEVDAG+LNAFVLAVEQGRRDPR RGRVAVVGVTSWPDQ PLRARILSRALLHTGKWEEA D+GG SPATSAQQ VRQRVAAGRGXXXXXXXXXASVAGVPRVRWSEV
Sbjct: 10 GRPPTLGEPVWVETVLRSHEASVVDDLSAAFELAETGVSASGVAGRREEMTVRGGGGRGGG-NGALLVHGPSGVGKTRLVEALAARLGCRLVKLSPGRLAAIGGVHADRVLSEAFQYCRRCVSHRVVLLLDSIDRLTPAARGNVGASRGEVDAGLLNAFVLAVEQGRRDPRCRGRVAVVGVTSWPDQRS-----------------QPLRARILSRALLHTGKWEEASADEGGISPATSAQQ----------------------------------------------------------------VRQRVAAGRGXXXXXXXXXASVAGVPRVRWSEV 266
BLAST of mRNA_Ecto-sp13_S_contig11844.1584.1 vs. uniprot
Match: A0A058Z3F1_FONAL (Uncharacterized protein n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058Z3F1_FONAL) HSP 1 Score: 78.6 bits (192), Expect = 2.840e-12 Identity = 71/213 (33.33%), Postives = 97/213 (45.54%), Query Frame = 1
Query: 196 LLVHGPPGVGKTRLVEALAARLGCRLVKLSPGRLAAIGGIHADRVLSEAFQFCRRCVSRR---VVLLLDSIDRLTPA----ARGNVGASRGEVDAGML------NAFVLAVEQGRRDPRWRGRVAVVGVTSWPDQVHPTARRCA--GQEVLVLPPRHPLRARILSRALLHTGKWEEAHTDKGGKSPATSAQQDAFEEVVGLCQGFTAGDMCAV 789
+L+HGPPGVGKT LV +A LG L+ + P + + ++R L E F RR + ++ +D ID L PA G+ + V A +L +A A G RG V VV T+ PD V P RR +EV + PP RAR+L RAL+ A GG PA + E+ C GF A D+ A+
Sbjct: 249 VLLHGPPGVGKTHLVRGVALALGALLLPVDPSAVLSSVTGESERRLRECFDRARRFAAESGSPCIIFIDEIDALCPARSLDGSGSASGTTTRVIAQLLTLMDGFHARSDAARVGGPGGCLRGEVVVVAATNRPDAVDPALRRPGRFDREVGIAPPDARARARLL-RALVGATLGHGAAPPPGG--PAV-LEGGFLAELATRCIGFVAADLAAL 457
BLAST of mRNA_Ecto-sp13_S_contig11844.1584.1 vs. uniprot
Match: C5K6M4_PERM5 (AAA ATPase, putative n=2 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5K6M4_PERM5) HSP 1 Score: 69.3 bits (168), Expect = 2.940e-9 Identity = 57/201 (28.36%), Postives = 84/201 (41.79%), Query Frame = 1
Query: 196 LLVHGPPGVGKTRLVEALAARLGCRLVKLSPGRLAAIGGIHADRVLSEAFQFCRRCVSRRVVLLLDSIDRLTPAARGNVGASRGEVDAGMLNAFVLAVEQGRRDPRWRGRVAVVGVTSWPDQVHPTARRCA--GQEVLVLPPRHPLRARILSRALLHTGKWEEAHTDKGGKSPATSAQQDAFEEVVGLCQGFTAGDMCAVA 792
+L+HGPPG GKT L A+A LGC K+S + + G+ + + F + ++L+D ID + P R E A + +++ Q D W+ V V+G TS PD V P RR +E+ + P RA IL T G S A E+ C G+ D+ A+A
Sbjct: 206 VLLHGPPGSGKTMLATAIAGELGCAWFKVSAPEI--VSGVSGESEATLRSLFATAVSNAPCIVLIDEIDAICP---------RRETAAREMERRIVSQMQISMDALWKTGVVVIGTTSRPDSVEPALRRSGRFDREIAMGMPDRAARAMIL-------------RTVTNGMSLAEDVD---IVELGRRCPGYVGADLSALA 379
BLAST of mRNA_Ecto-sp13_S_contig11844.1584.1 vs. uniprot
Match: A0A7J6NX26_PEROL (Uncharacterized protein n=3 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6NX26_PEROL) HSP 1 Score: 68.2 bits (165), Expect = 8.940e-9 Identity = 54/201 (26.87%), Postives = 83/201 (41.29%), Query Frame = 1
Query: 196 LLVHGPPGVGKTRLVEALAARLGCRLVKLSPGRLAAIGGIHADRVLSEAFQFCRRCVSRRVVLLLDSIDRLTPAARGNVGASRGEVDAGMLNAFVLAVEQGRRDPRWRGRVAVVGVTSWPDQVHPTARRCA--GQEVLVLPPRHPLRARILSRALLHTGKWEEAHTDKGGKSPATSAQQDAFEEVVGLCQGFTAGDMCAVA 792
+L+HGPPG GKT L A+A LGC K+S + + G+ + + F + ++L+D ID + P R E A + +++ Q D W+ V V+G TS PD V P RR +E+ + P RA IL E+ + G+ C G+ D+ A+A
Sbjct: 209 VLLHGPPGSGKTMLATAIAGELGCAWFKVSAPEI--VSGVSGESEATLRSLFSTAVSNAPCIVLIDEIDAICP---------RRETAAREMERRIVSQMQISMDGLWKTGVVVIGTTSRPDSVEPALRRSGRFDREIAMGMPDRAARAMILKTVTEGMSLGEDVDVVELGRR----------------CPGYVGADLSALA 382
BLAST of mRNA_Ecto-sp13_S_contig11844.1584.1 vs. uniprot
Match: A0A7J6UHL3_PEROL (Uncharacterized protein n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6UHL3_PEROL) HSP 1 Score: 67.8 bits (164), Expect = 9.340e-9 Identity = 54/201 (26.87%), Postives = 83/201 (41.29%), Query Frame = 1
Query: 196 LLVHGPPGVGKTRLVEALAARLGCRLVKLSPGRLAAIGGIHADRVLSEAFQFCRRCVSRRVVLLLDSIDRLTPAARGNVGASRGEVDAGMLNAFVLAVEQGRRDPRWRGRVAVVGVTSWPDQVHPTARRCA--GQEVLVLPPRHPLRARILSRALLHTGKWEEAHTDKGGKSPATSAQQDAFEEVVGLCQGFTAGDMCAVA 792
+L+HGPPG GKT L A+A LGC K+S + + G+ + + F + ++L+D ID + P R E A + +++ Q D W+ V V+G TS PD V P RR +E+ + P RA IL E+ + G+ C G+ D+ A+A
Sbjct: 201 VLLHGPPGSGKTMLATAIAGELGCAWFKVSAPEI--VSGVSGESEATLRNLFSTAVSNAPCIVLIDEIDAICP---------RRETAAREMERRIVSQMQISMDGLWKTGVVVIGTTSRPDSVEPALRRSGRFDREIAMGMPDRAARAMILKTVTEGMSLGEDVDVVELGRR----------------CPGYVGADLSALA 374
BLAST of mRNA_Ecto-sp13_S_contig11844.1584.1 vs. uniprot
Match: A0A7J6LS50_PEROL (Uncharacterized protein (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LS50_PEROL) HSP 1 Score: 67.8 bits (164), Expect = 1.130e-8 Identity = 54/201 (26.87%), Postives = 83/201 (41.29%), Query Frame = 1
Query: 196 LLVHGPPGVGKTRLVEALAARLGCRLVKLSPGRLAAIGGIHADRVLSEAFQFCRRCVSRRVVLLLDSIDRLTPAARGNVGASRGEVDAGMLNAFVLAVEQGRRDPRWRGRVAVVGVTSWPDQVHPTARRCA--GQEVLVLPPRHPLRARILSRALLHTGKWEEAHTDKGGKSPATSAQQDAFEEVVGLCQGFTAGDMCAVA 792
+L+HGPPG GKT L A+A LGC K+S + + G+ + + F + ++L+D ID + P R E A + +++ Q D W+ V V+G TS PD V P RR +E+ + P RA IL E+ + G+ C G+ D+ A+A
Sbjct: 226 VLLHGPPGSGKTMLATAIAGELGCAWFKVSAPEI--VSGVSGESEATLRNLFSTAVSNAPCIVLIDEIDAICP---------RRETAAREMERRIVSQMQISMDGLWKTGVVVIGTTSRPDSVEPALRRSGRFDREIAMGMPDRAARAMILKTVTEGMSLGEDVDVVELGRR----------------CPGYVGADLSALA 399
BLAST of mRNA_Ecto-sp13_S_contig11844.1584.1 vs. uniprot
Match: A0A7J6LFE1_PEROL (Uncharacterized protein n=3 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LFE1_PEROL) HSP 1 Score: 67.8 bits (164), Expect = 1.190e-8 Identity = 54/201 (26.87%), Postives = 83/201 (41.29%), Query Frame = 1
Query: 196 LLVHGPPGVGKTRLVEALAARLGCRLVKLSPGRLAAIGGIHADRVLSEAFQFCRRCVSRRVVLLLDSIDRLTPAARGNVGASRGEVDAGMLNAFVLAVEQGRRDPRWRGRVAVVGVTSWPDQVHPTARRCA--GQEVLVLPPRHPLRARILSRALLHTGKWEEAHTDKGGKSPATSAQQDAFEEVVGLCQGFTAGDMCAVA 792
+L+HGPPG GKT L A+A LGC K+S + + G+ + + F + ++L+D ID + P R E A + +++ Q D W+ V V+G TS PD V P RR +E+ + P RA IL E+ + G+ C G+ D+ A+A
Sbjct: 234 VLLHGPPGSGKTMLATAIAGELGCAWFKVSAPEI--VSGVSGESEATLRNLFSTAVSNAPCIVLIDEIDAICP---------RRETAAREMERRIVSQMQISMDGLWKTGVVVIGTTSRPDSVEPALRRSGRFDREIAMGMPDRAARAMILKTVTEGMSLGEDVDVVELGRR----------------CPGYVGADLSALA 407
BLAST of mRNA_Ecto-sp13_S_contig11844.1584.1 vs. uniprot
Match: A0A8I2YSD0_9AGAM (P-loop containing nucleoside triphosphate hydrolase protein n=2 Tax=Boletus reticuloceps TaxID=495285 RepID=A0A8I2YSD0_9AGAM) HSP 1 Score: 65.5 bits (158), Expect = 5.540e-8 Identity = 57/202 (28.22%), Postives = 90/202 (44.55%), Query Frame = 1
Query: 196 LLVHGPPGVGKTRLVEALAARLGCRLVKLSPGRLAAIGGIHADRVLSEAFQFCRRCVSRRVVLLLDSIDRLTPAARGNVGASRGEVDAGMLNAFVLAVEQGRRDPRWRG--RVAVVGVTSWPDQVHPTARRCA--GQEVLVLPPRHPLRARILSRALLHTGKWEEAHTDKGGKSPATSAQQDAFEEVVGLCQGFTAGDMCAV 789
+L+HGPPG GKT L A+AA ++ ++ L++ + L E F+ R +++LD ID L P + G GEV+ ++ A +L + G D + G RV V+G T+ P+ + P RR +E + P R IL L K+P + +Q D + G G+ D+ AV
Sbjct: 298 ILLHGPPGTGKTHLARAIAASTSSSVIVINGPELSSAYHGETEARLREVFRNAR--AKSPCIVVLDEIDALVPQREDSAG---GEVEKRVV-ATLLTIMDGMEDEKTSGTERVVVIGTTNRPNAIDPALRRPGRFDREFEIGVPDAEARLAILEVLL--------------AKTPHSISQAD-LRALAGRAHGYVGADLSAV 478
BLAST of mRNA_Ecto-sp13_S_contig11844.1584.1 vs. uniprot
Match: A0A662U524_9CREN (AAA family ATPase (Fragment) n=1 Tax=Thermoprotei archaeon TaxID=2250277 RepID=A0A662U524_9CREN) HSP 1 Score: 64.7 bits (156), Expect = 8.170e-8 Identity = 57/201 (28.36%), Postives = 93/201 (46.27%), Query Frame = 1
Query: 196 LLVHGPPGVGKTRLVEALAARLGCRLVKLSPGRLAAIGGIHADRVLSEAFQFCRRCVSRRVVLLLDSIDRLTPAARGNVGASRGEVDAGMLNAFVLAVEQGRRDPRWRGRVAVVGVTSWPDQVHPTARRCA--GQEVLVLPPRHPLRARILSRALLHTGKWEEAHTDKGGKSPATSAQQDA-FEEVVGLCQGFTAGDMCAV 789
+L+HGPPGVGKT L +ALA +G + ++ + + ++ L E F+ + + ++ +D ID + P VG EV+ ++ A +L + G ++ RGR+ V+G T+ D V P RR +E+ + PP R IL E HT +D EE+ L G+T D+ A+
Sbjct: 222 ILLHGPPGVGKTLLAKALANEIGAYFIAINGPEIMSKFYGESEARLREIFEEAEK--NAPAIIFIDEIDAIAPKREEVVG----EVEKRVV-AQLLTLMDGLKE---RGRIIVIGATNRIDAVDPALRRPGRFDREIEIPPPDKRARRAIL-----------EVHTRN------VPLDEDVNLEEIAELTHGYTGADLAAL 395 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11844.1584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11844.1584.1 >prot_Ecto-sp13_S_contig11844.1584.1 ID=prot_Ecto-sp13_S_contig11844.1584.1|Name=mRNA_Ecto-sp13_S_contig11844.1584.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=340bp GRPPTRGEPVWVETVLQSHEGSVVDDLSAAFELAEAGVSADGVAGRREEMback to top mRNA from alignment at Ecto-sp13_S_contig11844:219..4350- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11844.1584.1 ID=mRNA_Ecto-sp13_S_contig11844.1584.1|Name=mRNA_Ecto-sp13_S_contig11844.1584.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11844:219..4350- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11844:219..4350- >mRNA_Ecto-sp13_S_contig11844.1584.1 ID=mRNA_Ecto-sp13_S_contig11844.1584.1|Name=mRNA_Ecto-sp13_S_contig11844.1584.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1020bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11844:219..4350- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |