mRNA_Ecto-sp13_S_contig11844.1584.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11844.1584.1
Unique NamemRNA_Ecto-sp13_S_contig11844.1584.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11844.1584.1 vs. uniprot
Match: A0A6H5JGW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW6_9PHAE)

HSP 1 Score: 541 bits (1393), Expect = 4.930e-179
Identity = 312/374 (83.42%), Postives = 316/374 (84.49%), Query Frame = 1
Query:    1 GRPPTRGEPVWVETVLQSHEGSVVDDLSAAFELAEAGVSADGVAGRREEMAVRGSGVDGGGGNGALLVHGPPGVGKTRLVEALAARLGCRLVKLSPGRLAAIGGIHADRVLSEAFQFCRRCVSRRVVLLLDSIDRLTPAARGNVGASRGEVDAGMLNAFVLAVEQGRRDPRWRGRVAVVGVTSWPDQVHPTARRCAGQEVLVLPPRH-----------------------------------PLRARILSRALLHTGKWEEAHTDKGGKSPATSAQQDAFEEVVGLCQGFTAGDMCAVAXXXXXXXXXXXSRLPDNDDGGRQTAEQRALARAEALRAGFRQVRQRVAAGRGXXXXXXXXXASVAGVPRVRWSEV 1017
            GR PTRGEPVWVETVL+SHE SVVDDLSAAFELAE GVSADGVAGRREEM VRG G       GALLVHGPPGVGKTRLVEALAARLGCRLVKLSPGRLAAIGG+HADRVLSEAFQ+C RCVSRRVVLLLDSIDRLTPAARGNVGASRGEVDAG LNAFVLAVEQGRRDPRWRGRVAVVGVTSWPDQVHPTARRCAGQEVLVLPPRH                                   PLRARILSRALLHTGKWEEA  D+GGKSPAT AQQDAFEEVVGLCQGFTAGDMCAVA XXXXXX    SRLPDNDD GRQTAEQRALARAEALRAGFRQVRQRVAAGRGXXXXXXXXXASVAGVPRVRWSEV
Sbjct:  566 GRRPTRGEPVWVETVLRSHEASVVDDLSAAFELAETGVSADGVAGRREEMTVRGGGXXXXX-XGALLVHGPPGVGKTRLVEALAARLGCRLVKLSPGRLAAIGGVHADRVLSEAFQYCHRCVSRRVVLLLDSIDRLTPAARGNVGASRGEVDAGKLNAFVLAVEQGRRDPRWRGRVAVVGVTSWPDQVHPTARRCAGQEVLVLPPRHVSSLLFAARTTVAVAVPLSPRPRSIRTPATGERSQPLRARILSRALLHTGKWEEARADEGGKSPATKAQQDAFEEVVGLCQGFTAGDMCAVAAXXXXXXR---SRLPDNDDEGRQTAEQRALARAEALRAGFRQVRQRVAAGRGXXXXXXXXXASVAGVPRVRWSEV 935          
BLAST of mRNA_Ecto-sp13_S_contig11844.1584.1 vs. uniprot
Match: D7FVM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM1_ECTSI)

HSP 1 Score: 385 bits (988), Expect = 2.820e-126
Identity = 235/339 (69.32%), Postives = 240/339 (70.80%), Query Frame = 1
Query:    1 GRPPTRGEPVWVETVLQSHEGSVVDDLSAAFELAEAGVSADGVAGRREEMAVRGSGVDGGGGNGALLVHGPPGVGKTRLVEALAARLGCRLVKLSPGRLAAIGGIHADRVLSEAFQFCRRCVSRRVVLLLDSIDRLTPAARGNVGASRGEVDAGMLNAFVLAVEQGRRDPRWRGRVAVVGVTSWPDQVHPTARRCAGQEVLVLPPRHPLRARILSRALLHTGKWEEAHTDKGGKSPATSAQQDAFEEVVGLCQGFTAGDMCAVAXXXXXXXXXXXSRLPDNDDGGRQTAEQRALARAEALRAGFRQVRQRVAAGRGXXXXXXXXXASVAGVPRVRWSEV 1017
            GRPPT GEPVWVETVL+SHE SVVDDLSAAFELAE GVSA GVAGRREEM VRG G  GGG NGALLVHGP GVGKTRLVEALAARLGCRLVKLSPGRLAAIGG+HADRVLSEAFQ+CRRCVS RVVLLLDSIDRLTPAARGNVGASRGEVDAG+LNAFVLAVEQGRRDPR RGRVAVVGVTSWPDQ                    PLRARILSRALLHTGKWEEA  D+GG SPATSAQQ                                                                VRQRVAAGRGXXXXXXXXXASVAGVPRVRWSEV
Sbjct:   10 GRPPTLGEPVWVETVLRSHEASVVDDLSAAFELAETGVSASGVAGRREEMTVRGGGGRGGG-NGALLVHGPSGVGKTRLVEALAARLGCRLVKLSPGRLAAIGGVHADRVLSEAFQYCRRCVSHRVVLLLDSIDRLTPAARGNVGASRGEVDAGLLNAFVLAVEQGRRDPRCRGRVAVVGVTSWPDQRS-----------------QPLRARILSRALLHTGKWEEASADEGGISPATSAQQ----------------------------------------------------------------VRQRVAAGRGXXXXXXXXXASVAGVPRVRWSEV 266          
BLAST of mRNA_Ecto-sp13_S_contig11844.1584.1 vs. uniprot
Match: A0A058Z3F1_FONAL (Uncharacterized protein n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058Z3F1_FONAL)

HSP 1 Score: 78.6 bits (192), Expect = 2.840e-12
Identity = 71/213 (33.33%), Postives = 97/213 (45.54%), Query Frame = 1
Query:  196 LLVHGPPGVGKTRLVEALAARLGCRLVKLSPGRLAAIGGIHADRVLSEAFQFCRRCVSRR---VVLLLDSIDRLTPA----ARGNVGASRGEVDAGML------NAFVLAVEQGRRDPRWRGRVAVVGVTSWPDQVHPTARRCA--GQEVLVLPPRHPLRARILSRALLHTGKWEEAHTDKGGKSPATSAQQDAFEEVVGLCQGFTAGDMCAV 789
            +L+HGPPGVGKT LV  +A  LG  L+ + P  + +     ++R L E F   RR  +      ++ +D ID L PA      G+   +   V A +L      +A   A   G      RG V VV  T+ PD V P  RR     +EV + PP    RAR+L RAL+       A    GG  PA   +     E+   C GF A D+ A+
Sbjct:  249 VLLHGPPGVGKTHLVRGVALALGALLLPVDPSAVLSSVTGESERRLRECFDRARRFAAESGSPCIIFIDEIDALCPARSLDGSGSASGTTTRVIAQLLTLMDGFHARSDAARVGGPGGCLRGEVVVVAATNRPDAVDPALRRPGRFDREVGIAPPDARARARLL-RALVGATLGHGAAPPPGG--PAV-LEGGFLAELATRCIGFVAADLAAL 457          
BLAST of mRNA_Ecto-sp13_S_contig11844.1584.1 vs. uniprot
Match: C5K6M4_PERM5 (AAA ATPase, putative n=2 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5K6M4_PERM5)

HSP 1 Score: 69.3 bits (168), Expect = 2.940e-9
Identity = 57/201 (28.36%), Postives = 84/201 (41.79%), Query Frame = 1
Query:  196 LLVHGPPGVGKTRLVEALAARLGCRLVKLSPGRLAAIGGIHADRVLSEAFQFCRRCVSRRVVLLLDSIDRLTPAARGNVGASRGEVDAGMLNAFVLAVEQGRRDPRWRGRVAVVGVTSWPDQVHPTARRCA--GQEVLVLPPRHPLRARILSRALLHTGKWEEAHTDKGGKSPATSAQQDAFEEVVGLCQGFTAGDMCAVA 792
            +L+HGPPG GKT L  A+A  LGC   K+S   +  + G+  +   +    F     +   ++L+D ID + P         R E  A  +   +++  Q   D  W+  V V+G TS PD V P  RR     +E+ +  P    RA IL              T   G S A         E+   C G+   D+ A+A
Sbjct:  206 VLLHGPPGSGKTMLATAIAGELGCAWFKVSAPEI--VSGVSGESEATLRSLFATAVSNAPCIVLIDEIDAICP---------RRETAAREMERRIVSQMQISMDALWKTGVVVIGTTSRPDSVEPALRRSGRFDREIAMGMPDRAARAMIL-------------RTVTNGMSLAEDVD---IVELGRRCPGYVGADLSALA 379          
BLAST of mRNA_Ecto-sp13_S_contig11844.1584.1 vs. uniprot
Match: A0A7J6NX26_PEROL (Uncharacterized protein n=3 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6NX26_PEROL)

HSP 1 Score: 68.2 bits (165), Expect = 8.940e-9
Identity = 54/201 (26.87%), Postives = 83/201 (41.29%), Query Frame = 1
Query:  196 LLVHGPPGVGKTRLVEALAARLGCRLVKLSPGRLAAIGGIHADRVLSEAFQFCRRCVSRRVVLLLDSIDRLTPAARGNVGASRGEVDAGMLNAFVLAVEQGRRDPRWRGRVAVVGVTSWPDQVHPTARRCA--GQEVLVLPPRHPLRARILSRALLHTGKWEEAHTDKGGKSPATSAQQDAFEEVVGLCQGFTAGDMCAVA 792
            +L+HGPPG GKT L  A+A  LGC   K+S   +  + G+  +   +    F     +   ++L+D ID + P         R E  A  +   +++  Q   D  W+  V V+G TS PD V P  RR     +E+ +  P    RA IL          E+    + G+                 C G+   D+ A+A
Sbjct:  209 VLLHGPPGSGKTMLATAIAGELGCAWFKVSAPEI--VSGVSGESEATLRSLFSTAVSNAPCIVLIDEIDAICP---------RRETAAREMERRIVSQMQISMDGLWKTGVVVIGTTSRPDSVEPALRRSGRFDREIAMGMPDRAARAMILKTVTEGMSLGEDVDVVELGRR----------------CPGYVGADLSALA 382          
BLAST of mRNA_Ecto-sp13_S_contig11844.1584.1 vs. uniprot
Match: A0A7J6UHL3_PEROL (Uncharacterized protein n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6UHL3_PEROL)

HSP 1 Score: 67.8 bits (164), Expect = 9.340e-9
Identity = 54/201 (26.87%), Postives = 83/201 (41.29%), Query Frame = 1
Query:  196 LLVHGPPGVGKTRLVEALAARLGCRLVKLSPGRLAAIGGIHADRVLSEAFQFCRRCVSRRVVLLLDSIDRLTPAARGNVGASRGEVDAGMLNAFVLAVEQGRRDPRWRGRVAVVGVTSWPDQVHPTARRCA--GQEVLVLPPRHPLRARILSRALLHTGKWEEAHTDKGGKSPATSAQQDAFEEVVGLCQGFTAGDMCAVA 792
            +L+HGPPG GKT L  A+A  LGC   K+S   +  + G+  +   +    F     +   ++L+D ID + P         R E  A  +   +++  Q   D  W+  V V+G TS PD V P  RR     +E+ +  P    RA IL          E+    + G+                 C G+   D+ A+A
Sbjct:  201 VLLHGPPGSGKTMLATAIAGELGCAWFKVSAPEI--VSGVSGESEATLRNLFSTAVSNAPCIVLIDEIDAICP---------RRETAAREMERRIVSQMQISMDGLWKTGVVVIGTTSRPDSVEPALRRSGRFDREIAMGMPDRAARAMILKTVTEGMSLGEDVDVVELGRR----------------CPGYVGADLSALA 374          
BLAST of mRNA_Ecto-sp13_S_contig11844.1584.1 vs. uniprot
Match: A0A7J6LS50_PEROL (Uncharacterized protein (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LS50_PEROL)

HSP 1 Score: 67.8 bits (164), Expect = 1.130e-8
Identity = 54/201 (26.87%), Postives = 83/201 (41.29%), Query Frame = 1
Query:  196 LLVHGPPGVGKTRLVEALAARLGCRLVKLSPGRLAAIGGIHADRVLSEAFQFCRRCVSRRVVLLLDSIDRLTPAARGNVGASRGEVDAGMLNAFVLAVEQGRRDPRWRGRVAVVGVTSWPDQVHPTARRCA--GQEVLVLPPRHPLRARILSRALLHTGKWEEAHTDKGGKSPATSAQQDAFEEVVGLCQGFTAGDMCAVA 792
            +L+HGPPG GKT L  A+A  LGC   K+S   +  + G+  +   +    F     +   ++L+D ID + P         R E  A  +   +++  Q   D  W+  V V+G TS PD V P  RR     +E+ +  P    RA IL          E+    + G+                 C G+   D+ A+A
Sbjct:  226 VLLHGPPGSGKTMLATAIAGELGCAWFKVSAPEI--VSGVSGESEATLRNLFSTAVSNAPCIVLIDEIDAICP---------RRETAAREMERRIVSQMQISMDGLWKTGVVVIGTTSRPDSVEPALRRSGRFDREIAMGMPDRAARAMILKTVTEGMSLGEDVDVVELGRR----------------CPGYVGADLSALA 399          
BLAST of mRNA_Ecto-sp13_S_contig11844.1584.1 vs. uniprot
Match: A0A7J6LFE1_PEROL (Uncharacterized protein n=3 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LFE1_PEROL)

HSP 1 Score: 67.8 bits (164), Expect = 1.190e-8
Identity = 54/201 (26.87%), Postives = 83/201 (41.29%), Query Frame = 1
Query:  196 LLVHGPPGVGKTRLVEALAARLGCRLVKLSPGRLAAIGGIHADRVLSEAFQFCRRCVSRRVVLLLDSIDRLTPAARGNVGASRGEVDAGMLNAFVLAVEQGRRDPRWRGRVAVVGVTSWPDQVHPTARRCA--GQEVLVLPPRHPLRARILSRALLHTGKWEEAHTDKGGKSPATSAQQDAFEEVVGLCQGFTAGDMCAVA 792
            +L+HGPPG GKT L  A+A  LGC   K+S   +  + G+  +   +    F     +   ++L+D ID + P         R E  A  +   +++  Q   D  W+  V V+G TS PD V P  RR     +E+ +  P    RA IL          E+    + G+                 C G+   D+ A+A
Sbjct:  234 VLLHGPPGSGKTMLATAIAGELGCAWFKVSAPEI--VSGVSGESEATLRNLFSTAVSNAPCIVLIDEIDAICP---------RRETAAREMERRIVSQMQISMDGLWKTGVVVIGTTSRPDSVEPALRRSGRFDREIAMGMPDRAARAMILKTVTEGMSLGEDVDVVELGRR----------------CPGYVGADLSALA 407          
BLAST of mRNA_Ecto-sp13_S_contig11844.1584.1 vs. uniprot
Match: A0A8I2YSD0_9AGAM (P-loop containing nucleoside triphosphate hydrolase protein n=2 Tax=Boletus reticuloceps TaxID=495285 RepID=A0A8I2YSD0_9AGAM)

HSP 1 Score: 65.5 bits (158), Expect = 5.540e-8
Identity = 57/202 (28.22%), Postives = 90/202 (44.55%), Query Frame = 1
Query:  196 LLVHGPPGVGKTRLVEALAARLGCRLVKLSPGRLAAIGGIHADRVLSEAFQFCRRCVSRRVVLLLDSIDRLTPAARGNVGASRGEVDAGMLNAFVLAVEQGRRDPRWRG--RVAVVGVTSWPDQVHPTARRCA--GQEVLVLPPRHPLRARILSRALLHTGKWEEAHTDKGGKSPATSAQQDAFEEVVGLCQGFTAGDMCAV 789
            +L+HGPPG GKT L  A+AA     ++ ++   L++      +  L E F+  R       +++LD ID L P    + G   GEV+  ++ A +L +  G  D +  G  RV V+G T+ P+ + P  RR     +E  +  P    R  IL   L               K+P + +Q D    + G   G+   D+ AV
Sbjct:  298 ILLHGPPGTGKTHLARAIAASTSSSVIVINGPELSSAYHGETEARLREVFRNAR--AKSPCIVVLDEIDALVPQREDSAG---GEVEKRVV-ATLLTIMDGMEDEKTSGTERVVVIGTTNRPNAIDPALRRPGRFDREFEIGVPDAEARLAILEVLL--------------AKTPHSISQAD-LRALAGRAHGYVGADLSAV 478          
BLAST of mRNA_Ecto-sp13_S_contig11844.1584.1 vs. uniprot
Match: A0A662U524_9CREN (AAA family ATPase (Fragment) n=1 Tax=Thermoprotei archaeon TaxID=2250277 RepID=A0A662U524_9CREN)

HSP 1 Score: 64.7 bits (156), Expect = 8.170e-8
Identity = 57/201 (28.36%), Postives = 93/201 (46.27%), Query Frame = 1
Query:  196 LLVHGPPGVGKTRLVEALAARLGCRLVKLSPGRLAAIGGIHADRVLSEAFQFCRRCVSRRVVLLLDSIDRLTPAARGNVGASRGEVDAGMLNAFVLAVEQGRRDPRWRGRVAVVGVTSWPDQVHPTARRCA--GQEVLVLPPRHPLRARILSRALLHTGKWEEAHTDKGGKSPATSAQQDA-FEEVVGLCQGFTAGDMCAV 789
            +L+HGPPGVGKT L +ALA  +G   + ++   + +     ++  L E F+   +  +   ++ +D ID + P     VG    EV+  ++ A +L +  G ++   RGR+ V+G T+  D V P  RR     +E+ + PP    R  IL           E HT            +D   EE+  L  G+T  D+ A+
Sbjct:  222 ILLHGPPGVGKTLLAKALANEIGAYFIAINGPEIMSKFYGESEARLREIFEEAEK--NAPAIIFIDEIDAIAPKREEVVG----EVEKRVV-AQLLTLMDGLKE---RGRIIVIGATNRIDAVDPALRRPGRFDREIEIPPPDKRARRAIL-----------EVHTRN------VPLDEDVNLEEIAELTHGYTGADLAAL 395          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11844.1584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGW6_9PHAE4.930e-17983.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVM1_ECTSI2.820e-12669.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A058Z3F1_FONAL2.840e-1233.33Uncharacterized protein n=1 Tax=Fonticula alba Tax... [more]
C5K6M4_PERM52.940e-928.36AAA ATPase, putative n=2 Tax=Perkinsus marinus (st... [more]
A0A7J6NX26_PEROL8.940e-926.87Uncharacterized protein n=3 Tax=Perkinsus olseni T... [more]
A0A7J6UHL3_PEROL9.340e-926.87Uncharacterized protein n=2 Tax=Perkinsus olseni T... [more]
A0A7J6LS50_PEROL1.130e-826.87Uncharacterized protein (Fragment) n=1 Tax=Perkins... [more]
A0A7J6LFE1_PEROL1.190e-826.87Uncharacterized protein n=3 Tax=Perkinsus olseni T... [more]
A0A8I2YSD0_9AGAM5.540e-828.22P-loop containing nucleoside triphosphate hydrolas... [more]
A0A662U524_9CREN8.170e-828.36AAA family ATPase (Fragment) n=1 Tax=Thermoprotei ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11844contigEcto-sp13_S_contig11844:219..4350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score390.2
Seed ortholog evalue9.9e-106
Seed eggNOG ortholog2880.D7FVM1
Model size1020
KEGG koko:K14571
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.preribosome binding
EggNOG OGsCOG0464@1,KOG0733@2759
Cds size1020
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11844.1584.1prot_Ecto-sp13_S_contig11844.1584.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11844 219..4350 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462625.268824-CDS-Ecto-sp13_S_contig11844:218..3201681462625.268824-CDS-Ecto-sp13_S_contig11844:218..320Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11844 219..320 -
1681462625.2920837-CDS-Ecto-sp13_S_contig11844:620..8121681462625.2920837-CDS-Ecto-sp13_S_contig11844:620..812Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11844 621..812 -
1681462625.302101-CDS-Ecto-sp13_S_contig11844:1187..12921681462625.302101-CDS-Ecto-sp13_S_contig11844:1187..1292Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11844 1188..1292 -
1681462625.310091-CDS-Ecto-sp13_S_contig11844:1541..16671681462625.310091-CDS-Ecto-sp13_S_contig11844:1541..1667Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11844 1542..1667 -
1681462625.3203278-CDS-Ecto-sp13_S_contig11844:2493..25841681462625.3203278-CDS-Ecto-sp13_S_contig11844:2493..2584Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11844 2494..2584 -
1681462625.341179-CDS-Ecto-sp13_S_contig11844:3001..30791681462625.341179-CDS-Ecto-sp13_S_contig11844:3001..3079Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11844 3002..3079 -
1681462625.350658-CDS-Ecto-sp13_S_contig11844:3654..37431681462625.350658-CDS-Ecto-sp13_S_contig11844:3654..3743Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11844 3655..3743 -
1681462625.3613162-CDS-Ecto-sp13_S_contig11844:4113..43501681462625.3613162-CDS-Ecto-sp13_S_contig11844:4113..4350Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11844 4114..4350 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11844.1584.1

>prot_Ecto-sp13_S_contig11844.1584.1 ID=prot_Ecto-sp13_S_contig11844.1584.1|Name=mRNA_Ecto-sp13_S_contig11844.1584.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=340bp
GRPPTRGEPVWVETVLQSHEGSVVDDLSAAFELAEAGVSADGVAGRREEM
AVRGSGVDGGGGNGALLVHGPPGVGKTRLVEALAARLGCRLVKLSPGRLA
AIGGIHADRVLSEAFQFCRRCVSRRVVLLLDSIDRLTPAARGNVGASRGE
VDAGMLNAFVLAVEQGRRDPRWRGRVAVVGVTSWPDQVHPTARRCAGQEV
LVLPPRHPLRARILSRALLHTGKWEEAHTDKGGKSPATSAQQDAFEEVVG
LCQGFTAGDMCAVAAAAAAAAAAAGSRLPDNDDGGRQTAEQRALARAEAL
RAGFRQVRQRVAAGRGGAGGGGGGSASVAGVPRVRWSEV*
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mRNA from alignment at Ecto-sp13_S_contig11844:219..4350-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11844.1584.1 ID=mRNA_Ecto-sp13_S_contig11844.1584.1|Name=mRNA_Ecto-sp13_S_contig11844.1584.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11844:219..4350- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCGCCCTCCAACTAGAGGGGAACCGGTTTGGGTGGAGACCGTCTTGCA GAGTCACGAGGGCTCCGTCGTCGATGACCTCTCCGCCGCTTTCGAGCTAG CAGAGGCAGGGGTCAGCGCCGATGGGGTTGCTGGACGGAGAGAGGAGATG GCCGTGAGGGGCAGCGGGGTTGATGGCGGCGGCGGTAACGGTGCCTTGCT CGTTCACGGTCCTCCGGGGGTGGGAAAAACTCGCCTGGTAGGTGGTGAGA GATAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GACAGAGAGAGAGAGACAGAGAGATAGAGAAACAGAGAGACAGAGAGACA GAGAGGCAGAGAGACAGATAGACAGAGAGAGAGAGAGGAGAGATAGAGAG GGCGAAAACGCAAGGGCTAAGTTCAAGGTCAACACAGATAATAATCTGAC CAACATGTCTTGGACGCCTGCCGTCAGCAGCAGCCGTTAGCGCGGCAGCG TGCCTCACCCTCACCCCCATCCTCTTGATGACCTTTTTTACCGCGCGTAT ATAACAGGTTGAAGCGCTTGCGGCACGCCTTGGTTGTCGTCTTGTCAAGC TTTCTCCGGGAAGACTGGCCGCCATCGGGGGGATCCACGCCGACCGGTGA GATGACGTCACAGCATGGATGACGTCACAGCGTGGTGTTTCCCCCTGCCT TCACGGTACAAGCATGTTGTGGCCTATGCCAGCACTCCCCCCGTCACGTG CAGCCACCCCGCTTTGATAAGGAGCTAATCGTAGCCAAGTGACGGGTGGA GAACAAGACGCGAATAGTTGGGGTTGGCTCTGGTTAAGAATAGGACTTGT TCTCCATCTCGACAGGGATGGTTCCGTCCTTGACCAAGCACTACACCGAC TTAAAGAATGAGCAACTTTTGGGCCCCCGTCCCCCTGTTTAGGTGAAGGG CGCTCAAGCAACGACGGCGAGGAAAAACATGGTGTGAGCGATGAGGTGCT AGCTGAAGGTGTAGGCAAAGCGCATCATGAGAATCCTCCCAAACCTAACC AAGCAAGAAATAGTTTACTATCGGTTGGTCGGCGAGTATCATACGTTTTC CGGGACGACGTTGCGGTGCTGGACATAACGAGGTCGTGTACCTACGACCG TGCATGACAATGAAGATACCCCGACCCCCGACCCCCACCTCCGTCCCTGT CTCGTCTCTGTCCCGTGTCAGGGTCTTGTCGGAGGCGTTTCAATTCTGCC GCAGGTGCGTATCACGCAGGGTGGTACTCCTCCTCGACTCCATCGACAGG TGGGATGAAACCTTGACCTACAGAAAAACTACCCCCCCCCCCCCCCTGCA CAGTCACGAGTAGTTTTTTCAGGTCCTCTCGCCAACCCCACCTAATCCTG TCTGCGAGCCCCCGTGCTGGAATGCCCGGGGCCGGAAGTGGCGAAAAAAA ACAAGCAGCAACGAGCCACTCGCTAACCTCGATACTCGGACCCAAAAGGG GGTGGTATGAGAATGTCTTTCCGTGCGCTGTTGAATGAGCCCCGCGACGA GATGTGCAGCAGTACTCTGCAGCACGAAGTTTGGGTTGCACTCCACCGTC CATGGCGCAGCATTTCGACGAGATCAGCAGCAACATGTGTTGGAAACATG CGGTGTCGTCTACTGTAGAGAGTTAAAACGGGGGCGCTTGCTTTCCCTCC GTCTGTTGTCCGGCAGGCTTACGCCGGCGGCTCGGGGCAACGTGGGTGCT TCCCGCGGCGAGGTGGACGCCGGCATGCTGAACGCCTTCGTGCTCGCGGT GGAGCAGGTGCGCGGGTGTTCTTTCTGTGCGCAGGCGGTGGTGATGGTCT GTCGGAGTTTTTCTTTCGCCTCTCATTGGGCACTGATTAATCAGCGGTGG CAACAACCGTGTGTGCGCGTGATAGTGGTGCCGTTGGCCTGTATTGCTGC GATCCGGTAGCCGTGGGGCTTCGGCAGAGTAGGGCCAGTACCCTGTCTGG GTACATTGACTGCAGGGAAGCTGCCCCCTATGCGGTATTTTTGGATTGCT CTTTGTCACCAAAGGATCCAAGCAAGGGTTTTGTTTTTTCTGTACACGGC GGAAGGGATGCATGTTTATGGAGAATCCATTCGAGGTACTCGAGCATGGC GGGATGATGGATGTGCCGCTGCACCCTTCATATCCTTCCGTCCTCGCGAG ATGGAGGGTGAGAAGGAGACACGCGATGCCCTGTGTGGCTCGTACTCTTA CGGCCCAGGTGTGTTGCTTCGGTGTGCAAACAGAAGCTGAGAGCCCGGCT CTGTTGCCACGAAATCATCGCAGCGGATTCTGTCCCCTGTCTCTCTCTAT GTCTTTCTCCGGCTAAGTCTCTCTATTTCTCTTTCTCTCTCTGTTGTCTC TCTTTCTCTCTCTGTTGTCTCTCTTTCTCTCTTCTATTCCTCTGTTTGTT TGTCTGTCTGTGTGTCTGTCTCTCTCTTTCTTCTTTCTGTTTCTGTTGCT GTCTCTCTCAAGCATGTGCTGACAAGAACAGACAAAGCACGTCGCGCACG ATAATTCACCCTCATCCCACCGACCCGCCTAAACTACCGTGTTTCCTGCT GCTGCGCTCGATCGCCCACCACCCGGAAAAAAGGGACGACGGGATCCCCG CTGGCGAGGTCGCGTGGCCGTGGTGGGAGTGACCTCGTGGCCGGATCAGG TACATCCCACCGCTCGTCGGTGCGCCGGGCAGGAGGTGCTCGTCCTTCCC CCCAGGCACGTCGTTTTTTGTCGTCCATGTTGTGCGTTGTCGTATTGTTG TTGTTGTTGCTGCTGCTACTTCATTTCTCTAGGGTGGGCGGGCTACTGGA CTATTAGCTGCTGGTGGTGCTTCTGTAGTCTTGCTCTTGACCCTCGACAA CAGCAGTGGTCGCTACTTTTTACTGCACGCGTAACCGCTATCGTTGCCCT GTCTTTGTTCTCTCGCCCTCGTTGGATTTGCGCCCCGGCTACGGGGGAGC GCAGCCAGCCTCTGCGCGCCAGGATCTTGAGCCGCGCTCTACTGCACACG GGCAAGTGGGAAGAAGCCCACACCGACAAAGGGGGGAAATCCCCAGCCAC CAGTGCACAGCAGGTACGCGTGTTCATTTGACGTATGTAGATGGAGCAGT ACGCCCGCACCGGTTCGAATCATGTTGCCTTAACAAAGGCGTTCATAAGA AACGCCCTCTCGGTCGCTGGAGCGAGCGAGCGAGCGAGCCTCTCTCTCGG CATCGGCTCTTTGCATCATTCGGGACACGAAAGTCACCGTTGAAGCTGGG TGTGGACTTCAGTCCTGAGCCAGGAGGCGGCTGTGAGGTTGGGACGCGGC GGCCGACGCAACGACTCCTTGTGCGCGTGAGGGCCTCTGATGCGGCAAAC GGCCAGTGGAGACGCCATCCACCCCGGCATAAATCGTACGTGCCGAGCCA GCCGCCCGCCTTTCCTCGCCCGTCCCCGGCGTCCTCAGGACGCCTTTGAA GAAGTGGTCGGGCTTTGCCAGGGGTTCACGGCGGGGGACATGTGCGCTGT TGCTGCTGCGGCGGCTGCTGCTGCTGCTGCTGCTGGGTCGCGGCTACCGG ACAACGATGACGGGGGGAGACAAACGGCCGAGCAACGGGCTCTCGCACGC GCGGAAGCTCTTCGTGCAGGGTTCCGACAGGTCTGATACACGCTAGTACA AGAGCCTTTTTCTTTTGCGCTCCTTTGTGTGGGCATTCTTTGTGCAGGTT GGCGTGTTTTTGCCTTGGTCATCGGTCTGCTCCGTAGGCACGCGCTCCTA CAGAAAGCGGCCCTTGTGTTTTGGTTCATCCGAAACACCCTTGTCTCGTA CCCTGGAAGGTCGTAGATTCATACTCGTCTGCTAGAGAGGAAGTTATCTG TGCCACACTGTTTCCAACTCTGTCGGCACGACGGCACAGCCCCTGTCGAC CGTTCATATCGACCGCCTGGTCATAAACAGGTTCGACAGCGTGTGGCTGC CGGAAGGGGAGGGGCTGGCGGAGGCGGGGGCGGCTCGGCGTCTGTGGCCG GGGTACCGCGTGTGCGATGGTCAGAGGTATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11844:219..4350-

>mRNA_Ecto-sp13_S_contig11844.1584.1 ID=mRNA_Ecto-sp13_S_contig11844.1584.1|Name=mRNA_Ecto-sp13_S_contig11844.1584.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1020bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11844:219..4350- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCGCCCTCCAACTAGAGGGGAACCGGTTTGGGTGGAGACCGTCTTGCA
GAGTCACGAGGGCTCCGTCGTCGATGACCTCTCCGCCGCTTTCGAGCTAG
CAGAGGCAGGGGTCAGCGCCGATGGGGTTGCTGGACGGAGAGAGGAGATG
GCCGTGAGGGGCAGCGGGGTTGATGGCGGCGGCGGTAACGGTGCCTTGCT
CGTTCACGGTCCTCCGGGGGTGGGAAAAACTCGCCTGGTTGAAGCGCTTG
CGGCACGCCTTGGTTGTCGTCTTGTCAAGCTTTCTCCGGGAAGACTGGCC
GCCATCGGGGGGATCCACGCCGACCGGGTCTTGTCGGAGGCGTTTCAATT
CTGCCGCAGGTGCGTATCACGCAGGGTGGTACTCCTCCTCGACTCCATCG
ACAGGCTTACGCCGGCGGCTCGGGGCAACGTGGGTGCTTCCCGCGGCGAG
GTGGACGCCGGCATGCTGAACGCCTTCGTGCTCGCGGTGGAGCAGGGACG
ACGGGATCCCCGCTGGCGAGGTCGCGTGGCCGTGGTGGGAGTGACCTCGT
GGCCGGATCAGGTACATCCCACCGCTCGTCGGTGCGCCGGGCAGGAGGTG
CTCGTCCTTCCCCCCAGGCACCCTCTGCGCGCCAGGATCTTGAGCCGCGC
TCTACTGCACACGGGCAAGTGGGAAGAAGCCCACACCGACAAAGGGGGGA
AATCCCCAGCCACCAGTGCACAGCAGGACGCCTTTGAAGAAGTGGTCGGG
CTTTGCCAGGGGTTCACGGCGGGGGACATGTGCGCTGTTGCTGCTGCGGC
GGCTGCTGCTGCTGCTGCTGCTGGGTCGCGGCTACCGGACAACGATGACG
GGGGGAGACAAACGGCCGAGCAACGGGCTCTCGCACGCGCGGAAGCTCTT
CGTGCAGGGTTCCGACAGGTTCGACAGCGTGTGGCTGCCGGAAGGGGAGG
GGCTGGCGGAGGCGGGGGCGGCTCGGCGTCTGTGGCCGGGGTACCGCGTG
TGCGATGGTCAGAGGTATGA
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