mRNA_Ecto-sp13_S_contig11841.1583.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11841.1583.1
Unique NamemRNA_Ecto-sp13_S_contig11841.1583.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11841.1583.1 vs. uniprot
Match: A0A6H5JAU5_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU5_9PHAE)

HSP 1 Score: 491 bits (1264), Expect = 9.330e-172
Identity = 236/247 (95.55%), Postives = 240/247 (97.17%), Query Frame = 1 
Query:    1 QLQINFNMSFLDLPCEFLSVDALDVLGSNRVNITGKEVQKWHLDPQGVKQAFHGRNRQQRDIVQFDEGVVASLQQDLHEDGVHAAVLTEENFDTWLQEHDFTFVAFHAPWCGWCQRLMPTLEVLAEVLEESQRGITVGTVDCTTQQNLCTKRFPVRAFPTLKLFNEEKLLKPDYSGDRTVEAFSTYLYSKADGKTMKHQKRGRKGFTEVGLHDDKWPGCMVTGHIMVNRVPGNFHIEAASKSHTFHG 741
            +LQINFNMSFLDLPCE+LSVDALDVLGSNRVNITGKEVQKWHLDPQGVKQAFHGRNRQQRDIVQFDE VVASLQ DLHE+GVHAAVLTEENFDTWL EHDFTFVAFHAPWCGWCQRLMPTLEVLAEVLEESQRGITVGTVDCTTQQNLCTKRF V AFPTLKLFNEEKLLKPDYSGDRTV+AFSTYLYSKADGKTMKHQKRGRK F EVGLHDDKWPGCMVTGHIMVNRVPGNFHIEAASKSHTFHG
Sbjct:   93 KLQINFNMSFLDLPCEYLSVDALDVLGSNRVNITGKEVQKWHLDPQGVKQAFHGRNRQQRDIVQFDEAVVASLQ-DLHENGVHAAVLTEENFDTWLLEHDFTFVAFHAPWCGWCQRLMPTLEVLAEVLEESQRGITVGTVDCTTQQNLCTKRFSVLAFPTLKLFNEEKLLKPDYSGDRTVQAFSTYLYSKADGKTMKHQKRGRKEFPEVGLHDDKWPGCMVTGHIMVNRVPGNFHIEAASKSHTFHG 338
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BLAST of mRNA_Ecto-sp13_S_contig11841.1583.1 vs. uniprot
Match: D8LK23_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK23_ECTSI)

HSP 1 Score: 501 bits (1289), Expect = 1.890e-170
Identity = 239/247 (96.76%), Postives = 243/247 (98.38%), Query Frame = 1 
Query:    1 QLQINFNMSFLDLPCEFLSVDALDVLGSNRVNITGKEVQKWHLDPQGVKQAFHGRNRQQRDIVQFDEGVVASLQQDLHEDGVHAAVLTEENFDTWLQEHDFTFVAFHAPWCGWCQRLMPTLEVLAEVLEESQRGITVGTVDCTTQQNLCTKRFPVRAFPTLKLFNEEKLLKPDYSGDRTVEAFSTYLYSKADGKTMKHQKRGRKGFTEVGLHDDKWPGCMVTGHIMVNRVPGNFHIEAASKSHTFHG 741
            +LQINFNMSFLDLPCE+LSVDALDVLGSNRVNITGKEVQKWHLDPQGVKQAFHGRNRQQRDIVQFDEGVVASLQ DLHEDGVHAAVLTEENFDTWL EHDFTFVAFHAPWCGWCQRLMPTLEVLAEVLEESQRGITVGTVDCTTQQNLCTKRFPVRAFPTLKLFNEEKLLKPDYSGDRTVEAFSTYLYSKADGK MKHQ++GRKGF EVGLHDDKWPGCMVTGHIMVNRVPGNFHIEAASKSHTFHG
Sbjct:  468 KLQINFNMSFLDLPCEYLSVDALDVLGSNRVNITGKEVQKWHLDPQGVKQAFHGRNRQQRDIVQFDEGVVASLQ-DLHEDGVHAAVLTEENFDTWLLEHDFTFVAFHAPWCGWCQRLMPTLEVLAEVLEESQRGITVGTVDCTTQQNLCTKRFPVRAFPTLKLFNEEKLLKPDYSGDRTVEAFSTYLYSKADGKPMKHQRKGRKGFPEVGLHDDKWPGCMVTGHIMVNRVPGNFHIEAASKSHTFHG 713
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BLAST of mRNA_Ecto-sp13_S_contig11841.1583.1 vs. uniprot
Match: A0A7S2B692_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B692_9STRA)

HSP 1 Score: 221 bits (564), Expect = 1.100e-66
Identity = 117/249 (46.99%), Postives = 158/249 (63.45%), Query Frame = 1 
Query:    1 QLQINFNMSFLDLPCEFLSVDALDVLGSNRVNITGKEVQKWHLDPQGVKQAFHGRNRQQRDIVQFDEGVVASLQQDLHEDGVHAAVLTEENFDTWLQEHDFTFVAFHAPWCGWCQRLMPTLEVLAEVLEESQRGIT-----VGTVDCTTQQNLCTKRFPVRAFPTLKLFNEEKLLKPDYSGDRTVEAFSTYLYSKAD-GKTMKHQKRGRKGFTEVGLHDDKWPGCMVTGHIMVNRVPGNFHIEAASKSH 729
            QL+INFN++ +DL C++ SVD  DVLG+N  N+T K V+KW LD  GVK+ F GRN++Q++I            ++LH +GVHA  L E  F+ +L+ H FTFV F+APWC WCQRL PT E  AE +E S+  +      +  VDC   +NLC ++  V AFPTL+LF + ++  PDY  DRTVEA   +  SK +  + MK     R+   E    D   PGCM++GH++VNRVPGNFH+EA SKSH
Sbjct:   39 QLRINFNITLMDLSCDYASVDVYDVLGTNTQNLT-KNVEKWQLDENGVKRIFQGRNKEQKEISHDTHHPEI---EELHANGVHANALDEAGFEEYLKSHKFTFVNFYAPWCIWCQRLEPTWEAFAEDIESSEGTVEELQVEIVKVDCVANRNLCAQQ-RVMAFPTLRLFKDGEVFAPDYKQDRTVEALRDFAKSKLELEEKMKDWHPKRRARIEAANVDH--PGCMISGHLLVNRVPGNFHLEARSKSH 280
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BLAST of mRNA_Ecto-sp13_S_contig11841.1583.1 vs. uniprot
Match: A0A4D9D0F3_9STRA (Thioredoxin domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0F3_9STRA)

HSP 1 Score: 220 bits (561), Expect = 5.380e-66
Identity = 110/242 (45.45%), Postives = 159/242 (65.70%), Query Frame = 1 
Query:    4 LQINFNMSFLDLPCEFLSVDALDVLGSNRVNITGKEVQKWHLDPQGVKQAFHGRNRQQRDIVQFDEGVVASLQQDLHEDGVHAAVLTEENFDTWLQEHDFTFVAFHAPWCGWCQRLMPTLEVLAEVLEESQRGITVGTVDCTTQQNLCTKRFPVRAFPTLKLFNEEKLLKPDYSGDRTVEAFSTYLYSKADGKTMKHQKRGRKGFTEVGLHDDKWPGCMVTGHIMVNRVPGNFHIEAASKSH 729
            +QINFN++ LDLPC +  VD LDVLG+NR+N++ K ++KW+LD  G ++ F GRNR++R I+  +      +   L ++G HA  LT ++FD +L+ ++FTFV+F+APWC WCQRL PT E  AE +EE+Q  + V  +DC T   LC  +  V AFPTL++FN  + L PDY+ DRT+ A ++++  K   +  K      K + E      + PGCM++GH++VNRVPGNFHIEA S  H
Sbjct:   69 IQINFNVTMLDLPCRYAVVDVLDVLGTNRMNVS-KNIEKWNLDEAGRRRYFQGRNREERSILHDEHHGALEV---LLQNGEHAVPLTADSFDEYLESNEFTFVSFYAPWCIWCQRLAPTWEAFAEHVEEAQIPVKVAKIDCVTHVQLCRDQ-KVHAFPTLRMFNRARPLPPDYNTDRTLVALTSFVTRKLAVEEKK------KSWPERDQEYVEHPGCMLSGHLLVNRVPGNFHIEARSAVH 299
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BLAST of mRNA_Ecto-sp13_S_contig11841.1583.1 vs. uniprot
Match: A0A7S2PQU9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PQU9_9STRA)

HSP 1 Score: 218 bits (555), Expect = 6.370e-65
Identity = 117/247 (47.37%), Postives = 152/247 (61.54%), Query Frame = 1 
Query:    1 QLQINFNMSFLDLPCEFLSVDALDVLGSNRVNITGKEVQKWHLDPQGVKQAFHGRNRQQRDIVQFDEGVVASLQQDLHEDGVHAAVLTEENFDTWLQEHDFTFVAFHAPWCGWCQRLMPTLEVLAEVLEESQRGITVGTVDCTTQQNLCTKRFPVRAFPTLKLFNEEKLLKPDYSGDRTVEAFSTYLYSKADGKTMKHQ----KRGRKGFTEVGLHDDKWPGCMVTGHIMVNRVPGNFHIEAASKSH 729
            Q+++NFN++ LDL C+++SVD LD LG+NR NIT K V+KW LD +GV++ F GRNR+ R +   +    A    DLH +GVHA  LT E  D +L+     F+ F+APWC WCQRL PT E  AE  E+    I + TVDC  Q +LC K   +RAFPTL+ F   K + PDY  DRTV A   +   K +  T K+     K       ++G   D  PGC V+GH+MVNRVPGNFHIEA SK+H
Sbjct:   78 QVRLNFNVTMLDLHCDYVSVDVLDALGTNRQNIT-KNVEKWQLDSEGVRRIFSGRNREMRAVSHEEH---AESLDDLHANGVHAVPLTAETIDKFLEISKTAFIDFYAPWCVWCQRLHPTWEKFAEQAEDEGLEIRIATVDCVAQMDLCRK-MNIRAFPTLRWFQNGKPVSPDYKQDRTVSALMGFTKRKLE-MTKKYNTIESKMDNPPGRQLGSRPDH-PGCQVSGHLMVNRVPGNFHIEAKSKNH 317
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BLAST of mRNA_Ecto-sp13_S_contig11841.1583.1 vs. uniprot
Match: A0A7R9VXN1_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VXN1_9STRA)

HSP 1 Score: 217 bits (552), Expect = 1.870e-64
Identity = 115/251 (45.82%), Postives = 159/251 (63.35%), Query Frame = 1 
Query:    1 QLQINFNMSFLDLPCEFLSVDALDVLGSNRVNITGKEVQKWHLDPQGVKQAFHGRNRQQRDIVQFDEGVVASLQQDLHEDGVHAAVLTEENFDTWLQEHDFTFVAFHAPWCGWCQRLMPTLEVLAEVLEESQRGITVGTVDCTTQQNLCTKRFPVRAFPTLKLFNEEKLLKPDYSGDRTVEAFSTYLYSKA--DGKTMKHQKRG-----RKGFTEVGLHDD-KWPGCMVTGHIMVNRVPGNFHIEAASKSH 729
            Q+++NFN++ LDL C+++SVD  D LG+NR N+T K ++KW LD +G ++ F GRNR+ R++         SL++ +HEDGVHA  LT+E F  +L E++  FV  +APWC WCQRLMPT E  AE +EE+   + VG+VDC T+  LC     V AFPT++ +   K + PDY  DRTV A + +   K   D K     KR      RK + E+  +   + PGC V+GH+MVNRVPGNFHIEA S +H
Sbjct:   75 QIRLNFNITLLDLHCDYVSVDVWDSLGTNRQNVT-KNIEKWQLDAEGNRRIFSGRNRETREVRHXXXX--ESLEE-MHEDGVHAKPLTKETFQAFLDENEMAFVDLYAPWCIWCQRLMPTWEKFAEEVEENNMPVGVGSVDCVTEAELCRNE-RVMAFPTIRWYQHGKAVSPDYKMDRTVAALTGFAKRKLEMDEKFKDWDKREQDPEKRKRYREMNAYSRAEHPGCQVSGHLMVNRVPGNFHIEAKSVNH 320
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BLAST of mRNA_Ecto-sp13_S_contig11841.1583.1 vs. uniprot
Match: A0A7S2E6Q8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2E6Q8_TRICV)

HSP 1 Score: 216 bits (551), Expect = 2.690e-64
Identity = 111/251 (44.22%), Postives = 154/251 (61.35%), Query Frame = 1 
Query:    1 QLQINFNMSFLDLPCEFLSVDALDVLGSNRVNITGKEVQKWHLDPQGVKQAFHGRNRQQRDIVQFDEGVVASLQQDLHEDGVHAAVLTEENFDTWLQEHDFTFVAFHAPWCGWCQRLMPTLEVLAEVLEESQRGITVGTVDCTTQQNLCTKRFPVRAFPTLKLFNEEKLLKPDYSGDRTVEAFSTYLYSKA-------DGKTMKHQKRGRKGFTEVGLHDDKWPGCMVTGHIMVNRVPGNFHIEAASKSHT 732
            Q+++NFN++   L C+F+SVD  D LG+NR N+T K V+KW LD +GV++ F GRNR+ R++            ++LHEDGVHA +LT E F  +L +++  FV  +APWC WCQRLMPT E  AE +EE +  + VG VDC T+  LC ++  V AFPTL+ +       PDY  DRTV A + Y   K        D +  K +   + G      +  ++PGC V+GH+MVNRVPGNFHIEA +K H+
Sbjct:   76 QIRLNFNITLHALHCDFVSVDVWDALGTNRQNVT-KNVEKWQLDGEGVRRIFSGRNREAREVKHXXXXXXL---EELHEDGVHATMLTSETFQKFLDDNEMAFVDLYAPWCIWCQRLMPTWEKFAEAVEEEKMPVGVGAVDCVTEAMLCREQ-RVMAFPTLRWYQGGVAQSPDYKMDRTVAALTGYARRKLETNERYKDWEKKKAEDPNKAGRAPPQYNRAEYPGCQVSGHLMVNRVPGNFHIEAKAKDHS 321
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BLAST of mRNA_Ecto-sp13_S_contig11841.1583.1 vs. uniprot
Match: A0A7S3JS36_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JS36_9STRA)

HSP 1 Score: 216 bits (549), Expect = 4.420e-64
Identity = 116/257 (45.14%), Postives = 160/257 (62.26%), Query Frame = 1 
Query:    4 LQINFNMSFLDLPCEFLSVDALDVLGSNRVNITGKEVQKWHLDPQGVKQAFHGRNRQQRDIVQFDEGVVASLQQDLHEDGVHAAVLTEENFDTWLQEHDFTFVAFHAPWCGWCQRLMPTLEVLAEVLEESQRG------------ITVGTVDCTTQQNLCTKRFPVRAFPTLKLFNEEKLLKPDYSGDRTVEAFSTYLYSKAD-GKTMK--HQKRGRKGFTEVGLHDDKWPGCMVTGHIMVNRVPGNFHIEAASKSH 729
            L+INFN++ ++L C+F +VD +D+LG+N +N+T K V+KW LD  G +  F GRNR+QRDI            ++LH++G+HA  + E +FD +L E+ + FV F+APWC WCQRL PT E LAE LE   +G            + V  VDC   +NLC  +  ++AFPTL+ F + K    DY  DRTV AF  +L  K +  KTM+  H +R ++   E+  H    PGCMV+GH++VNRVPGNFHIEA SK H
Sbjct:   66 LRINFNITMMELQCDFAAVDVVDILGTNSMNVT-KNVEKWQLDENGKRMIFQGRNREQRDIAHDSHHPEL---EELHKNGIHAIQIAEADFDQFLSENPYVFVNFYAPWCIWCQRLEPTWEALAEELERINQGDNGQEDTEISIDVDVVKVDCVANRNLCAAQ-KIQAFPTLRFFKDGKQYGIDYKQDRTVSAFIDFLKQKVELEKTMQDWHPRRKQR-MLEIKEH----PGCMVSGHVLVNRVPGNFHIEARSKLH 312
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BLAST of mRNA_Ecto-sp13_S_contig11841.1583.1 vs. uniprot
Match: A0A7S2RKA3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKA3_9STRA)

HSP 1 Score: 215 bits (547), Expect = 7.970e-64
Identity = 116/251 (46.22%), Postives = 163/251 (64.94%), Query Frame = 1 
Query:    1 QLQINFNMSFLDLPCEFLSVDALDVLGSNRVNITGKEVQKWHLDPQGVKQAFHGRNRQQRDIVQFDEGVVASLQQDLHEDGVHAAVLTEENFDTWLQEHDFTFVAFHAPWCGWCQRLMPTLEVLAEVLEE-----SQRGITVGTVDCTTQQNLCTKRFPVRAFPTLKLFNEEKLLKPDYSGDRTVEAFSTYLYSKADGKT-MK--HQKRGRKGFTEVGLHDDKWPGCMVTGHIMVNRVPGNFHIEAASKSH 729
            QL+INFN++ +DL C++  VD  DVLG+N  NI+ K ++KW LD +GV++ F GRNR+Q+DI         S+++ LH +GVHA  L +E+FD +L+EH F+FV F+APWC WCQRL PT E  AE LE       +  + V  VDC   + +C ++  ++AFPTL+LF + ++ +PDY  DRTV A   Y  +K + ++ MK  H KR  +    V   +   PGCM++G + VNRVPGNFHIEA SKSH
Sbjct:   66 QLRINFNITLMDLHCDYAVVDVYDVLGTNTQNIS-KNIEKWQLDERGVRRIFSGRNREQKDIAHDTHH--PSIEE-LHMNGVHAIPLDDESFDEFLKEHRFSFVNFYAPWCVWCQRLEPTWEAFAEELERLEGTPDELQVDVARVDCVANREVCMQQ-RIQAFPTLRLFKDGQIFQPDYKQDRTVAALKQYAQNKLELESRMKDWHPKRVER----VQAQNKDHPGCMISGTLDVNRVPGNFHIEARSKSH 307
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BLAST of mRNA_Ecto-sp13_S_contig11841.1583.1 vs. uniprot
Match: A0A7S1FM79_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FM79_9STRA)

HSP 1 Score: 213 bits (543), Expect = 2.530e-63
Identity = 111/248 (44.76%), Postives = 156/248 (62.90%), Query Frame = 1 
Query:    4 LQINFNMSFLDLPCEFLSVDALDVLGSNRVNITGKEVQKWHLDPQGVKQAFHGRNRQQRDIVQFDEGVVASLQQDLHEDGVHAAVLTEENFDTWLQEHDFTFVAFHAPWCGWCQRLMPTLEVLAEVLEESQRGITVGTVDCTTQQNLCTKRFPVRAFPTLKLFNEEKLLKPDYSGDRTVEAFSTYLYSKA--DGKTMKHQK----RGRKGFTEVGLHDDKWPGCMVTGHIMVNRVPGNFHIEAASKSH 729
            L++NFN++F DL C++ SVD LD LG+NR N+T K V+KW LD  G+++ F GRNR+ + +VQ +    ASL++ +HEDGVHA VLT +  D +++ H+  ++ F APWC WCQRL PT E  AE +E  +  + VGTVDC  Q ++C K + +RAFP+LK F+      PDY GDRTV+A   Y       D K    QK    +G       G  +    GC ++G+++VNRVPGNFH+ A S +H
Sbjct:   63 LRLNFNLTFQDLHCDYASVDVLDSLGTNRQNVT-KNVEKWQLDSNGIRRIFSGRNREVKKVVQQEHS--ASLEE-MHEDGVHAVVLTRDTIDEFIKSHEMAYINFFAPWCIWCQRLHPTWERFAEEVEYEEMPVGVGTVDCVEQADVCRK-YMIRAFPSLKWFSNGSNKTPDYKGDRTVDALVDYATRMVHMDTKYKDWQKAAADKGEDAVKPFGREEHM--GCQISGYLLVNRVPGNFHVIANSVNH 303
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11841.1583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAU5_9PHAE9.330e-17295.55Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
D8LK23_ECTSI1.890e-17096.76DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A7S2B692_9STRA1.100e-6646.99Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A4D9D0F3_9STRA5.380e-6645.45Thioredoxin domain-containing protein n=2 Tax=Mono... [more]
A0A7S2PQU9_9STRA6.370e-6547.37Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7R9VXN1_9STRA1.870e-6445.82Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2E6Q8_TRICV2.690e-6444.22Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S3JS36_9STRA4.420e-6445.14Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2RKA3_9STRA7.970e-6446.22Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1FM79_9STRA2.530e-6344.76Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11841contigEcto-sp13_S_contig11841:131..5239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score490.0
Seed ortholog evalue6.5e-136
Seed eggNOG ortholog2880.D8LK23
Preferred nameDDX39A
Model size741
KEGG koko:K12812,ko:K13182,ko:K20365,ko:K20367
KEGG Pathwayko03013,ko03015,ko03040,ko05164,map03013,map03015,map03040,map05164
KEGG ModuleM00406,M00430
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003723,GO:0003724,GO:0003725,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005730,GO:0005737,GO:0005911,GO:0006139,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0007275,GO:0008026,GO:0008104,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009506,GO:0009555,GO:0009791,GO:0009908,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0010468,GO:0010501,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0022414,GO:0030054,GO:0031123,GO:0031124,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0034641,GO:0042221,GO:0042623,GO:0042802,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0046483,GO:0046686,GO:0046907,GO:0048229,GO:0048367,GO:0048437,GO:0048438,GO:0048443,GO:0048466,GO:0048608,GO:0048653,GO:0048731,GO:0048827,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051716,GO:0055044,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0070035,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0090567,GO:0097159,GO:0099402,GO:0140098,GO:1901360,GO:1901363,GO:1990904
Exons7
EggNOG free text desc.mRNA-containing ribonucleoprotein complex export from nucleus
EggNOG OGsCOG0445@1,COG0513@1,KOG0329@2759,KOG2667@2759
EC3.6.4.13
Cds size720
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03041,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11841.1583.1prot_Ecto-sp13_S_contig11841.1583.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11841 152..5239 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462625.139131-UTR-Ecto-sp13_S_contig11841:130..1511681462625.139131-UTR-Ecto-sp13_S_contig11841:130..151Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11841 131..151 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462625.15399-CDS-Ecto-sp13_S_contig11841:151..2331681462625.15399-CDS-Ecto-sp13_S_contig11841:151..233Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11841 152..233 +
1681462625.1738698-CDS-Ecto-sp13_S_contig11841:1517..15641681462625.1738698-CDS-Ecto-sp13_S_contig11841:1517..1564Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11841 1518..1564 +
1681462625.183408-CDS-Ecto-sp13_S_contig11841:1900..19721681462625.183408-CDS-Ecto-sp13_S_contig11841:1900..1972Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11841 1901..1972 +
1681462625.1937733-CDS-Ecto-sp13_S_contig11841:2606..27131681462625.1937733-CDS-Ecto-sp13_S_contig11841:2606..2713Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11841 2607..2713 +
1681462625.2080157-CDS-Ecto-sp13_S_contig11841:3337..34761681462625.2080157-CDS-Ecto-sp13_S_contig11841:3337..3476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11841 3338..3476 +
1681462625.2169755-CDS-Ecto-sp13_S_contig11841:4342..44561681462625.2169755-CDS-Ecto-sp13_S_contig11841:4342..4456Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11841 4343..4456 +
1681462625.2264516-CDS-Ecto-sp13_S_contig11841:5080..52391681462625.2264516-CDS-Ecto-sp13_S_contig11841:5080..5239Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11841 5081..5239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11841.1583.1

>prot_Ecto-sp13_S_contig11841.1583.1 ID=prot_Ecto-sp13_S_contig11841.1583.1|Name=mRNA_Ecto-sp13_S_contig11841.1583.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=240bp
MSFLDLPCEFLSVDALDVLGSNRVNITGKEVQKWHLDPQGVKQAFHGRNR
QQRDIVQFDEGVVASLQQDLHEDGVHAAVLTEENFDTWLQEHDFTFVAFH
APWCGWCQRLMPTLEVLAEVLEESQRGITVGTVDCTTQQNLCTKRFPVRA
FPTLKLFNEEKLLKPDYSGDRTVEAFSTYLYSKADGKTMKHQKRGRKGFT
EVGLHDDKWPGCMVTGHIMVNRVPGNFHIEAASKSHTFHG
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mRNA from alignment at Ecto-sp13_S_contig11841:131..5239+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11841.1583.1 ID=mRNA_Ecto-sp13_S_contig11841.1583.1|Name=mRNA_Ecto-sp13_S_contig11841.1583.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5109bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11841:131..5239+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTCCAAATCAACTTCAACATGAGCTTCCTGGACCTTCCGTGCGAGTT
CCTCTCGGTGGACGCTCTCGACGTCCTCGGGAGTAACCGCGTCAACATCA
CCGGTATGCATACCATGCATTACGACAGCCTTTCTCGTTCAATGCGACGG
CAGAATATTAGACTGCTGCTGGATACAGATACTGCATTTTTTCTTGTGGT
GGGTCGTTGAGGTTCGCGGAGCTGTTCAAATCGAGAAGCACGTCAGCTGT
TTGGCTTGGGAAACGTCATCACAGCTGGCAGTCAGCCGTGGGTTCGTCCT
GCTGCCTGCGTTTGTTTTCATCTTGCTTCGCAACCCACTCCGGAAGTGAC
CCCTTGTATGTATGCGTGTTTACCGTCACGCACAAAACCAACAACATGAA
CGGCCGCCCGATGTGGAAGAATAGCGCCGCCGTGGTTCATTTAGACGTGC
AGGCTAGGGCCTGGCACTCGATGTCGGTTTTGCAAAGCATCTGTCACAGC
TAGAGCCAAGCGTACTTGTTACTTACATCGTCGGGTGTTCGTTCAGGGAC
AGAAAGAACAACTCTTGTTTTTTGCTATTATCGAAGAGATAGAATTTGTT
GCGTTTTTGTAGGAAAAAAACAACATACAACATGAAACTGACAAGGAGAT
GTTTGGTTTTGTTTTGTTGTTGCTGTACTAGTAGCTATTGGCCCAATGAC
GAAGACTTACCTTTGCGCTAGGCTTGGCCAGCATCGACGACTAGGCCGTG
TGACCCGCATGCCTCAATGTGGGGGTGCCTGGAAGCATGGCCCGGTCAGC
GTTAGCGTGGCAGTTGTTGAGCCGATGAGTGCGAAATGCTTATGAGAACT
GAGGGCTACTGTTGCCTTGCATGTTTTTTTCACCTGTGGGTTTTCGGCAC
ACGCTTTACGCATTCACACTCAGAAAGATTGTGTCTACATGAGTAGTAGA
TATGCGCAAGTATGTCTCGATTGAATCGGTGTTGGATGACGTTTGGACCG
AAAGGACAAAAGGATGTATCCGACTACACCCGGCGCCGAGCCAAAATGTT
ATCGCCTTTGGTGCGTTTGCGAATCGTCTTGTCATGCATCTTGCGGATAA
ACTGCGGGTAAACTGCGAATAACTTGCAGTGTTAAGTTTGACGGTGGGAG
AGAGTGCGTGGGCAGTGGGTGGCTTTTCCATTCTAGAGCACTCCCCCCCA
CAAGACGTACGCCCACAAAGGAGTCGACTTTGTGATTGTCGAAAAAGTGC
CGACGAAGCTCCAACACAAAAAGTATCAACCTCCTTGGTTGGTCTCCCGC
ATCCAAATCCTTTCGCATCTATTCCATCGTGCTCACTTGCTGTTCTGCTC
TGCGTCCCCCCCCCCCCCCCCCCCCCCTCGTCATCAGGAAAGGAAGTGCA
GAAGTGGCACTTGGATCCACAGGGCGTCAAGCAGGTAAAATACAGTACCT
GTGTGTTACCGACCGATCGCGCAACTGGGGTTTCTAATTTTGTTTTTTTT
CTATGTTGTGGTTGTGGTTGTGCGTGTTGCAAAATCTCCTGGCGGTGACA
CGCTGGGACGCGCGGCGGCTTCGGGCGCAGTGCCGTGTGTCGCAGCACGC
TCATTATTCTTTGTTGCACTATGTTGTTTGGCGGTGTGACTGCTGATGAT
GCTTCTTCTGCTGCTGCCGCTGTATCTGCGGTGTGTGTGCTGATTACGCT
TTTTGTCTCCGTTCCTGGGCCGTCTTCTTTTTTTTTCCCGTCTGGTGCGG
CCGACCGGCGGTTGGAAAAGGCGTTTCACGGGCGAAACCGTCAGCAAAGG
GACATCGTGCAGTTCGACGAGGGGGTCGTGGCTAGTCTACAGGTGAGGTT
CGGGTTGCAGCGGGTGAAAAAGAGCTGTGCGAAGGCGGTTACACAAGGTG
ATGATTGAGATGGAGGCGTGGTTGTTTACGGTTGAGCTCAGGGTTGGACG
AAGGACTTGTGGTGAGGGTTGACGGAGGCTACGGTATGCGCGAAACAATG
CAGTCCGTTCTGTGTCTTTGGTGGTAAAGCATGCGTACGCCGCTGCTCTT
GTGGGACTCTGATTGTTGTGCCGCGTGGAGAGCTCAGTTTCCCTTTTGGG
GTGTTCCATCGCGAGGCCTTCCTTGCTGCTTGCCAATGGGCGGTCGCGTT
TCTGTATGGTTAGCGCCGTTTGTTGGTGGTGATCTCGTCGTCCTCGTCCT
CGTCGTTGGTTGTTCTGCTATTGGTCAAGTAGCCGAACAATTAAGCTGCG
TTTTGCGGTGTCGGTGTTTCCGTACTTTTTTTTTTCGTCCTTATAGGGAG
TACGAAGACTTTTTTGGGGTCCAAACTAACGCCTCGTTCGAAGTTGCCGG
CTGCCCTTCTGTCTGTACTGTACCACCTACCTACGTATTGGTGTTGTCAA
ACACGACGACTTAATGATACGCAATTTTTTTTTTTTCTTTTTTCGGGGTT
TTTCCTCGTTTTCCGGCGCCCGTGAGCAGGACTTGCACGAAGACGGCGTT
CACGCCGCGGTGCTGACGGAGGAGAACTTCGACACTTGGCTGCAAGAACA
CGACTTCACTTTCGTAGCCTTCCACGCACCCTGGTACGACTGTGACCACT
GTGTTGCCACTTTATTGAGTTGTTTTCTTCCTGTCTCGTTTGCTTTTCTT
CTCTGTCTTTGCCTCTCTCTCTCGCGCGCTTTTGCTTCTTCTCTCGCTCT
TTTACCCATGATCTCGCTCTTTTGTGTGCTCCAATCGTCTACATGCAGCA
GCCGGTTGCCCCCCCCCCCCCCCCACCGCATTTTGTGCTGTTTCTCCCCA
CCACTGCACTCTTTTAGCCTGGTGGGCTATGTGTTTTGTTTGTTGCCTAG
TGGGACATGGTGTTGACTTGTGTGTGGCCTACGTTCTTTGGCGTGCCGGC
TTCCTCCTTTCCGTGATTGTTGTAGTTTTAGTTTTGCTTTGACTCTTGCT
TTCGGTTCGTGTTTTTTTTTGCGAATCGAATGTCCGCTTGCCTCGCATGC
TTGCACCCTCCTCCACTGTCTGTGTGAGTTTTGTTCTGACGTTCTTGTCT
CCCCGGTTCGATGTAAAGGAAGCGAGTGTCTCGTTCCGTAACTACCGTTC
CATATTGTGTTTCTTGTCGTCGCGAATGAAGATGAAGAACTTGCACAACA
TGCATGCATCAAGACTCTTTTGCCTCGGGTTGGGCGGGGTTGGAAATGCA
CACACAGGTGCGGGTGGTGCCAGCGACTGATGCCGACGCTGGAGGTGCTG
GCTGAGGTGCTGGAAGAGAGCCAGAGGGGGATCACGGTGGGAACGGTGGA
CTGCACCACGCAGCAGAACCTCTGCACCAAGCGATTCCCTGTTCGGGTGC
GTCGTGGTACTGTACACGTAGACCATAGATATTGGTGTGATACTTTTTAT
TTGCTCACGTCGTGGTCGACACCACAGCACTACTGTATGTACACGTAAAA
GTTGTTTGATTGGTTTGATTTGCTCCATGGTACGCATGAAGAGGAGGAGT
TCTGTCCTTGACATTTGTCGACTTCAGGTTCACACCACGATATGTAACAG
GCTGTTGGCCTTTTTTTTTTTTTCGTCGACGTTTGTGTGCCCGACCAGTC
GCTCAAGGCGTGCGTGTAGTACCAACCTTCGATAGCAAAAGTTGTTGAGT
TTCTCGGTGACGGTGTGTAGGCATCGTTTGCGATGTATCATAGCCAACCG
ACCCATCCCCCTCACGTCTGATCCTCTCTTTCTTTCTTTACTTTGCACGG
GTGATGCCACGCAGTGTTTGTGTGTTCCCCCCCCACGCATCCTACGGTTA
TTCGGCTGATCAGGTTTCCACGTCGCCAACACCTGTAGGAGTTGCGAATA
TGGCTTTGCGGCAGCACTTCTTCTTGTTTCGATCGCTTGGTTTCACCCCC
CCCCACCTATTTCCCCTCCGGTACTTCGTGAAAGCATGTAATCCTCGCGC
GGACAGCGTGCCCCCCACTACAGCTTCCTGGCGGCAGTGTCTCCTGTTGG
GTGTAGTTTTGTTTTTGAGATGAAAGCTGGTCTTGCGAGTTTTGATGGCC
GATGCGTTTTTTGTTTTTCCGTCTGAGGAAATTGAGCATGGCATCAACAT
CGTGATTACCCCACCCTCCCCACCGCGGTCTTTGCTCTAACCAGCAAAGC
ATGCGTTCACATGAGTACCCCCCCCCCCCCCGACCCCTCGCCCCCGCCAC
GTTGTCGCCCAGGCGTTCCCGACGTTGAAGCTGTTCAACGAGGAGAAGCT
TCTGAAGCCAGATTACAGCGGGGACCGCACGGTGGAGGCTTTCTCCACCT
ACCTCTACTCCAAGGCCGATGGAAAGGTGCCTCATTTTAATTTATTTTTC
GCGTCGCATCGTGTTCTTTCTCCCTCTCCCTCTCTCACATCATCCCTCTT
GTTGAAGTCGAGGGATATACATGGCGTGTGCATGAGGTGGGCGGCGGTGG
TAAGAGAAGGCGGGGTGTCTCGTTGTGTGAGAGGCCTATCTGTCCTTTCG
TTGCTCTGCGTAGATCTAGTTGATCTCTTGACGGACGGGGATGCGGTGCA
TGTTTACGCAAGTAGGTGCACACGTTGGATTGGGCCCTGCACTGCACCTC
AGCCACCCAAGGGCGAAAGGGAGAGGGAGAGTTCCATCCCAAATCGTGTC
CCCCCTGCCGTCTTCCTGTGTCCTTGACGGTGAATTAGTCCACGAATACG
TGCGTAGCAATCGAGTGATCCATGAATGGACGGGGCGGCGTGCTTCCACC
GCCATACGAGGCTAGTTGTACTGCTTCAAGCATCTTCCGAATGTGGTACA
TGGTATAATGAATATACTCTAGCGGCCCCATTTCCATGATGTTCTCGGAA
ATAAAAAATGCGACCCGAATGCTTATAAGCACAACTCAATACTCGGAGAA
GTGTTTTCGATTTTCGCGTGTTTCGCATTTTTTTATTATGGTCCATCCAG
ACTATGAAACACCAGAAGAGAGGGAGGAAAGGGTTCACTGAGGTAGGTTT
GCACGATGACAAGTGGCCCGGCTGCATGGTGACGGGACACATCATGGTCA
ACCGCGTTCCGGGAAACTTCCACATCGAGGCCGCCTCCAAGAGCCACACC
TTCCATGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11841:131..5239+

>mRNA_Ecto-sp13_S_contig11841.1583.1 ID=mRNA_Ecto-sp13_S_contig11841.1583.1|Name=mRNA_Ecto-sp13_S_contig11841.1583.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=720bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11841:131..5239+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCTTCCTGGACCTTCCGTGCGAGTTCCTCTCGGTGGACGCTCTCGA
CGTCCTCGGGAGTAACCGCGTCAACATCACCGGAAAGGAAGTGCAGAAGT
GGCACTTGGATCCACAGGGCGTCAAGCAGGCGTTTCACGGGCGAAACCGT
CAGCAAAGGGACATCGTGCAGTTCGACGAGGGGGTCGTGGCTAGTCTACA
GCAGGACTTGCACGAAGACGGCGTTCACGCCGCGGTGCTGACGGAGGAGA
ACTTCGACACTTGGCTGCAAGAACACGACTTCACTTTCGTAGCCTTCCAC
GCACCCTGGTGCGGGTGGTGCCAGCGACTGATGCCGACGCTGGAGGTGCT
GGCTGAGGTGCTGGAAGAGAGCCAGAGGGGGATCACGGTGGGAACGGTGG
ACTGCACCACGCAGCAGAACCTCTGCACCAAGCGATTCCCTGTTCGGGCG
TTCCCGACGTTGAAGCTGTTCAACGAGGAGAAGCTTCTGAAGCCAGATTA
CAGCGGGGACCGCACGGTGGAGGCTTTCTCCACCTACCTCTACTCCAAGG
CCGATGGAAAGACTATGAAACACCAGAAGAGAGGGAGGAAAGGGTTCACT
GAGGTAGGTTTGCACGATGACAAGTGGCCCGGCTGCATGGTGACGGGACA
CATCATGGTCAACCGCGTTCCGGGAAACTTCCACATCGAGGCCGCCTCCA
AGAGCCACACCTTCCATGGG
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