mRNA_Ecto-sp13_S_contig11839.1581.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11839.1581.1
Unique NamemRNA_Ecto-sp13_S_contig11839.1581.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11839.1581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11839contigEcto-sp13_S_contig11839:3461..3939 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size481
Hectar predicted targeting categoryother localisation
Exons1
Cds size477
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462624.8897035-UTR-Ecto-sp13_S_contig11839:3460..34621681462624.8897035-UTR-Ecto-sp13_S_contig11839:3460..3462Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11839 3461..3462 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462624.9028769-CDS-Ecto-sp13_S_contig11839:3462..39391681462624.9028769-CDS-Ecto-sp13_S_contig11839:3462..3939Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11839 3463..3939 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11839.1581.1prot_Ecto-sp13_S_contig11839.1581.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11839 3463..3939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11839.1581.1

>prot_Ecto-sp13_S_contig11839.1581.1 ID=prot_Ecto-sp13_S_contig11839.1581.1|Name=mRNA_Ecto-sp13_S_contig11839.1581.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=159bp
MMNMIICEGAATPAAFLDPTGFTTKQQQHPNARHVRPLYHQARGSQGRSP
PTQDARRTSPVRPLPSSAAGLLLQTASLASNRGLATSSSSSSSSNSRIAS
TPTTANDLLPSALRNGNVQAAAKSPAGGSVRSQVQQQQRRQRQQELQEQT
GSSGLSSTS
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mRNA from alignment at Ecto-sp13_S_contig11839:3461..3939+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11839.1581.1 ID=mRNA_Ecto-sp13_S_contig11839.1581.1|Name=mRNA_Ecto-sp13_S_contig11839.1581.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=479bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11839:3461..3939+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGATGATGAACATGATCATCTGCGAAGGCGCTGCCACGCCGGCAGCGTTC
CTAGACCCCACCGGTTTCACCACGAAGCAACAGCAACATCCCAATGCCAG
GCATGTACGTCCCTTGTACCACCAGGCACGCGGTAGCCAAGGTAGATCCC
CCCCGACTCAAGACGCTCGCAGAACCTCTCCTGTCCGACCGTTACCGTCG
TCGGCTGCTGGCCTGCTGCTGCAAACGGCGTCGCTGGCAAGCAACCGGGG
ACTGGCCACAAGCAGCAGCAGCAGCAGCAGCAGCAATAGCAGAATCGCCA
GTACTCCAACTACCGCCAACGACCTCCTTCCGTCAGCGTTGCGAAACGGA
AATGTGCAAGCGGCAGCGAAGAGCCCCGCCGGTGGGTCTGTTCGCTCTCA
GGTTCAACAACAGCAGCGGCGGCAGCGGCAGCAGGAACTACAGGAACAGA
CAGGGAGCAGCGGTCTTTCATCGACAAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11839:3461..3939+

>mRNA_Ecto-sp13_S_contig11839.1581.1 ID=mRNA_Ecto-sp13_S_contig11839.1581.1|Name=mRNA_Ecto-sp13_S_contig11839.1581.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=477bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11839:3461..3939+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGAACATGATCATCTGCGAAGGCGCTGCCACGCCGGCAGCGTTCCT
AGACCCCACCGGTTTCACCACGAAGCAACAGCAACATCCCAATGCCAGGC
ATGTACGTCCCTTGTACCACCAGGCACGCGGTAGCCAAGGTAGATCCCCC
CCGACTCAAGACGCTCGCAGAACCTCTCCTGTCCGACCGTTACCGTCGTC
GGCTGCTGGCCTGCTGCTGCAAACGGCGTCGCTGGCAAGCAACCGGGGAC
TGGCCACAAGCAGCAGCAGCAGCAGCAGCAGCAATAGCAGAATCGCCAGT
ACTCCAACTACCGCCAACGACCTCCTTCCGTCAGCGTTGCGAAACGGAAA
TGTGCAAGCGGCAGCGAAGAGCCCCGCCGGTGGGTCTGTTCGCTCTCAGG
TTCAACAACAGCAGCGGCGGCAGCGGCAGCAGGAACTACAGGAACAGACA
GGGAGCAGCGGTCTTTCATCGACAAGC
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