mRNA_Ecto-sp13_S_contig11838.1579.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11838.1579.1 vs. uniprot
Match: A0A6H5K5G6_9PHAE (Deubiquitinating enzyme A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5G6_9PHAE) HSP 1 Score: 573 bits (1476), Expect = 1.180e-190 Identity = 372/420 (88.57%), Postives = 377/420 (89.76%), Query Frame = 1
Query: 1 AELLASERAHQDNLGSAGESSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGDEDAIAELSDPALSKSRVLRSRTHSDLYSSRSPAAAPA----APPQWAGENRGSSGRRPRSQSPAPTRNAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVRARGPSSVAARSGGSGGRGSPTGGSGEDSEEAAADRAFREAMRRTGLSVVDVEPDGNCLFRSVSHQIYGDADRHYPVRKACVEHMYRHRARFGVFVAEDFRDYLFRIRQPGVWGDDLEIRALEEMFDRPIEIYSSESEGLQPMKIDFDASGLDMGMAPIKLSYHGQSHYNSVRDYSLRYPLHPRRSKRILQIREAQHAHTPGSAVPASLSRPGGGKAGSRGVGVMEKSCNSRFAGFKESAASSFSVGGGSAR 1248
AELLASERAHQDNLGSAGE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX K DEDAIA LSDPALSKSRVLRSRTHSDLYSSRSP APP+ A ENRG+SGRRPRSQSPAPT NAAA XXXXXXXXXXXXXXXXX GGVRARGPSSVAAR GGSGGRGSPTGGSGEDSEEAA +RAFREAMRRTGLSVVDVEPDGNCLFRSVSHQIYGDADRHYPVRKACVEHMYRHRARFGVFVAEDFRDYLFRIRQPGVWGDDLEIRALEEMFDRPIEIYSSESEGLQPMKIDFDASGLDMGMAPIKLSYHGQSHYNSVRD+SLRYPLHPRRSKRILQIREAQHAHTPGSAVPASLSRPGGGKAGSRGVGV+EKSCNSRFAGFKESA SSF VGGGSAR
Sbjct: 805 AELLASERAHQDNLGSAGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAGA-KEDEDAIAGLSDPALSKSRVLRSRTHSDLYSSRSPEXXXXXXXXAPPR-ARENRGTSGRRPRSQSPAPTHNAAAPQHSGGGGSRDXXXXXXXXXXXXXXXXXTAAPA-GGVRARGPSSVAARGGGSGGRGSPTGGSGEDSEEAAVERAFREAMRRTGLSVVDVEPDGNCLFRSVSHQIYGDADRHYPVRKACVEHMYRHRARFGVFVAEDFRDYLFRIRQPGVWGDDLEIRALEEMFDRPIEIYSSESEGLQPMKIDFDASGLDMGMAPIKLSYHGQSHYNSVRDFSLRYPLHPRRSKRILQIREAQHAHTPGSAVPASLSRPGGGKAGSRGVGVIEKSCNSRFAGFKESATSSFCVGGGSAR 1221
BLAST of mRNA_Ecto-sp13_S_contig11838.1579.1 vs. uniprot
Match: D8LLK1_ECTSI (Deubiquitinating enzyme A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK1_ECTSI) HSP 1 Score: 309 bits (791), Expect = 1.130e-95 Identity = 246/321 (76.64%), Postives = 248/321 (77.26%), Query Frame = 1
Query: 4 ELLASERAHQDNLGSAGESSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------KGDEDAIAELSDPALSKSRVLRSRTHSDLYSSRSPAAAPAAPPQWAGENRGSSGRRPRSQSPAPTRNAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVRARGPSSVAARSGGSGGRGSPTGGSGEDSEEAAADRAFREAMRRTGLSVVDVEPDGNCLFRSVSHQIYGDADRHYPVRKACVEHMYRHRARFGVFVAEDFRDYLFRIRQPGVWGDDLEIRALEEMFDRPIEIYSSESEGLQPMKIDFDASGL 948
ELLASERAHQD+LGSAGES XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KGDEDAIA LSDPALSKSRV HS XXXXXXXXXXXXXXXXXXXXXXXXX GGVRARGPS VAAR G SGGRGSPTGGSGEDSEEAAADRAFREAMRRTGLSVVDVEPDGNCLFRSVSHQIYGDADRHYPVRKACVEHMYRHRARFGVFVAEDFRDYLFRIRQPGVWGDDLEIRALEEMFDRPIEIYSSESEGLQPMKIDFDASG+
Sbjct: 352 ELLASERAHQDSLGSAGESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITGGLGSASAKGDEDAIAGLSDPALSKSRV-----HSG------------------------------------------------GXXXXXXXXXXXXXXXXXXXXXXXXXPAGGVRARGPSPVAARGGDSGGRGSPTGGSGEDSEEAAADRAFREAMRRTGLSVVDVEPDGNCLFRSVSHQIYGDADRHYPVRKACVEHMYRHRARFGVFVAEDFRDYLFRIRQPGVWGDDLEIRALEEMFDRPIEIYSSESEGLQPMKIDFDASGI 619
BLAST of mRNA_Ecto-sp13_S_contig11838.1579.1 vs. uniprot
Match: D8LLK0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK0_ECTSI) HSP 1 Score: 192 bits (488), Expect = 6.260e-57 Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 1
Query: 952 MGMAPIKLSYHGQSHYNSVRDYSLRYPLHPRRSKRILQIREAQHAHTPGSAVPASLSRPGGGKAGSRGVGVMEKSCNSRFAGFKESAASSFSVGGGSAR 1248
MGMAPIKLSYHGQSHYNSVRDYSLRYPLHPRRSKRILQIREAQHAHTPGSAVPASLSRPGGGKAGSRGVGV+EKSCNSRFAGFKESAASSFSVGGGSAR
Sbjct: 1 MGMAPIKLSYHGQSHYNSVRDYSLRYPLHPRRSKRILQIREAQHAHTPGSAVPASLSRPGGGKAGSRGVGVIEKSCNSRFAGFKESAASSFSVGGGSAR 99
BLAST of mRNA_Ecto-sp13_S_contig11838.1579.1 vs. uniprot
Match: A0A836CLU3_9STRA (OTU domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLU3_9STRA) HSP 1 Score: 177 bits (448), Expect = 1.000e-49 Identity = 91/149 (61.07%), Postives = 108/149 (72.48%), Query Frame = 1
Query: 646 VEPDGNCLFRSVSHQIYGDADRHYPVRKACVEHMYRHRARFGVFVAEDFRDYLFRIRQPGVWGDDLEIRALEEMFDRPIEIYSSESEGLQPMKIDFDASGLDMG-------------MAPIKLSYHGQSHYNSVRDYSLRYPLHPRRSK 1053
+EPDGNCL+R+VS QIYG+ D H VRKACV+HM HR RFG FVA DF YL R RQPGVWGDDLEIRALEE+FDRP+ IY++E +PMK+DF+ + L+ G +API LSYHG SHYNSVRD L YPL PR+S+
Sbjct: 1 MEPDGNCLYRAVSDQIYGNCDNHLYVRKACVDHMSAHRTRFGTFVAGDFAAYLRRARQPGVWGDDLEIRALEEVFDRPVRIYAAEDPRARPMKMDFEHA-LEGGGEXXXXXXXXXRRVAPITLSYHGHSHYNSVRDARLVYPLQPRQSQ 148
BLAST of mRNA_Ecto-sp13_S_contig11838.1579.1 vs. uniprot
Match: A0A7S2D4I9_9STRA (Deubiquitinating enzyme A n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D4I9_9STRA) HSP 1 Score: 159 bits (402), Expect = 4.980e-39 Identity = 80/167 (47.90%), Postives = 106/167 (63.47%), Query Frame = 1
Query: 604 FREAMRRTGLSVVDVEPDGNCLFRSVSHQIYGDADRHYPVRKACVEHMYRHRARFGVFVAEDFRDYLFRIRQPGVWGDDLEIRALEEMFDRPIEIYSSESEG---LQPMKIDFDASGLDMGMAPIKLSYHGQSHYNSVRDYSLRYPLHPRRSKRILQIREAQHAHTP 1095
F + + G+ VV++E DGNCLFR+V HQIY D +RH +R+ HM +R RF +F DF Y+ RIR+ GVWGDDLEIRA+EE+ DR IEIY +ES+ ++P+K +FD + PIKLSYHG SHYNSV D P+ PR + I +R +H P
Sbjct: 514 FLRGLGKKGMQVVEMEADGNCLFRAVCHQIYDDPERHPELRRQVAAHMESNRERFSIFCTSDFGVYVERIRRNGVWGDDLEIRAMEELIDRSIEIYVAESKEDGTIEPLKTNFDEELTGADVTPIKLSYHGSSHYNSVVDEKTALPIVPRETSVIYDVRHKRHMDEP 680
BLAST of mRNA_Ecto-sp13_S_contig11838.1579.1 vs. uniprot
Match: A0A7S3HTQ3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HTQ3_9STRA) HSP 1 Score: 156 bits (394), Expect = 1.560e-37 Identity = 80/168 (47.62%), Postives = 109/168 (64.88%), Query Frame = 1
Query: 574 DSEEAAADRAFREAMRRTGLSVVDVEPDGNCLFRSVSHQIYGDADRHYPVRKACVEHMYRHRARFGVFVAEDFRDYLFRIRQPGVWGDDLEIRALEEMFDRPIEIYSSESEGLQPMKIDFDASGLDMGMAPIKLSYHGQSHYNSVRDYSLRYPLHPRRSKRILQIREA 1077
+ E AA +R F E + GL V +E DGNCLFR++SHQ+Y + DRH +R CVEH+ RHR RF VF +F ++L + + G W DDLEIRALEE+ DR I IYSS ++ +P+ +F+ L G+ P+ LSYHG SHYNS+ D PL R+S+ +L+ R A
Sbjct: 413 EEEIAARERLFLEKLEEKGLHVFAIEGDGNCLFRAISHQLYLEQDRHDELRARCVEHLIRHRKRFEVFSDGNFDEHLQEMSKQGTWADDLEIRALEEITDRVITIYSSTADTYEPINNNFEEKNLLQGVPPLTLSYHGSSHYNSIYDERYPLPLVERKSRLLLRSRLA 580
BLAST of mRNA_Ecto-sp13_S_contig11838.1579.1 vs. uniprot
Match: A0A7S1G634_9STRA (Deubiquitinating enzyme A (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G634_9STRA) HSP 1 Score: 133 bits (334), Expect = 1.330e-30 Identity = 74/146 (50.68%), Postives = 95/146 (65.07%), Query Frame = 1
Query: 595 DRAFREAMRRTGLSVVDVEPDGNCLFRSVSHQIYGDADRHYPVRKACVEHMYRHRARFGVFVAEDFRDYLFRIRQPGVWGDDLEIRALEEMFDRPIEIYSSESEG----LQPMKIDFDASGLDMG----MAPIKLSYHGQSHYNSV 1008
+ AFR AM GL + D+E DGNCLFR+V+HQ+Y D R+ VR+A E+M +R+ F VA DF YL R+R WG E ALEEM+DRP+EIYS ES G L+P+K+ FD L MG + P++LSYHG SH+NSV
Sbjct: 315 EEAFRVAMASAGLPITDMEADGNCLFRAVAHQVYADPSRYDAVRQAVCEYMEANRSMFEQAVAGDFDVYLSRMRLDKEWGGHPEQLALEEMYDRPMEIYSRESWGKTNSLEPLKLHFDGE-LPMGELADVTPLRLSYHGGSHFNSV 459
BLAST of mRNA_Ecto-sp13_S_contig11838.1579.1 vs. uniprot
Match: A0A2R5G0B2_9STRA (Deubiquitinating enzyme A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G0B2_9STRA) HSP 1 Score: 130 bits (328), Expect = 2.420e-29 Identity = 67/136 (49.26%), Postives = 94/136 (69.12%), Query Frame = 1
Query: 631 LSVVDVEPDGNCLFRSVSHQIYGDADRHYPVRKACVEHMYRHRARFGVFVAED-FRDYLFRIRQPGVWGDDLEIRALEEMFDRPIEIYSSESEG--LQPMKIDFDA---SGLDMG-MAPIKLSYHGQSHYNSVRDY 1017
L+V VEPDGNCLFR+V+HQ+YGD++RH VR C +++ ++R RF + D F DY+ RQ VWGDD EIRA+EE++DRP+EIY++ G +P+K+ F+ S MG PI++S+HG +HYNSV Y
Sbjct: 405 LTVYSVEPDGNCLFRAVAHQVYGDSERHDIVRSDCCDYLEKNRERFAPLLGSDQFDDYVANKRQLKVWGDDPEIRAMEELYDRPVEIYAATGLGSNTEPLKLHFEGDLPSDSKMGPYLPIRISFHGNNHYNSVIPY 540
BLAST of mRNA_Ecto-sp13_S_contig11838.1579.1 vs. uniprot
Match: A0A0M0JCE2_9EUKA (Deubiquitinating enzyme A n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JCE2_9EUKA) HSP 1 Score: 122 bits (307), Expect = 2.190e-28 Identity = 61/140 (43.57%), Postives = 89/140 (63.57%), Query Frame = 1
Query: 595 DRAFREAMRRTGLSVVDVEPDGNCLFRSVSHQIYGDADRHYPVRKACVEHMYRHRARFGVFVAEDFRDYLFRIRQPGVWGDDLEIRALEEMFDRPIEIYSSESEGLQPMKIDFDASGLDMGMAPIKLSYHGQSHYNSVRD 1014
+R F E +R GL + + DGNCLFRSVS ++YGDA+ H VR+ C++HM + R F +V EDF YL R R+ V+G+ LEI+A+ E+++RP+ ++ + PM F A AP++LSYHG+SHYN + D
Sbjct: 45 ERRFEERLRARGLHIRRMLDDGNCLFRSVSDRVYGDAEMHDVVRRLCLDHMEKERDHFSQYVTEDFDAYLRRKRRDRVFGNHLEIQAISEIYNRPVHVFDVRGDTEAPMNT-FTAPSEGEAGAPLRLSYHGRSHYNVIVD 183
BLAST of mRNA_Ecto-sp13_S_contig11838.1579.1 vs. uniprot
Match: A0A0N5ABF2_9BILA (Deubiquitinating enzyme A n=1 Tax=Syphacia muris TaxID=451379 RepID=A0A0N5ABF2_9BILA) HSP 1 Score: 122 bits (305), Expect = 1.400e-27 Identity = 61/138 (44.20%), Postives = 88/138 (63.77%), Query Frame = 1
Query: 604 FREAMRRT-GLSVVDVEPDGNCLFRSVSHQIYGDADRHYPVRKACVEHMYRHRARFGVFVAEDFRDYLFRIRQPGVWGDDLEIRALEEMFDRPIEIYSSESEGLQPMKIDFDASGLDMGMAPIKLSYHGQSHYNSVRD 1014
F + +RRT G + + DG CLFR+V+ Q+YGD + H VR+ C+++M ++R F FV E+F DYL R R+P V G+ +E++A+ E+F RPIE+Y +E +AS AP++LSYHG SHYNSV D
Sbjct: 10 FEDRLRRTRGFIIKQMRGDGACLFRAVADQVYGDEEMHLDVRRLCLDYMEKNRDHFSQFVTEEFSDYLARKRRPDVEGNHVELQAISEIFLRPIELYEYSTEPKNIFSPHIEASSSLQPNAPLRLSYHGSSHYNSVID 147 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11838.1579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11838.1579.1 >prot_Ecto-sp13_S_contig11838.1579.1 ID=prot_Ecto-sp13_S_contig11838.1579.1|Name=mRNA_Ecto-sp13_S_contig11838.1579.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=432bp AELLASERAHQDNLGSAGESSSAASTAIMTNSSASSIGTLGGGGGGGFTGback to top mRNA from alignment at Ecto-sp13_S_contig11838:1370..4730- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11838.1579.1 ID=mRNA_Ecto-sp13_S_contig11838.1579.1|Name=mRNA_Ecto-sp13_S_contig11838.1579.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3361bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11838:1370..4730- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11838:1370..4730- >mRNA_Ecto-sp13_S_contig11838.1579.1 ID=mRNA_Ecto-sp13_S_contig11838.1579.1|Name=mRNA_Ecto-sp13_S_contig11838.1579.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1296bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11838:1370..4730- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |