mRNA_Ecto-sp13_S_contig11831.1577.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11831.1577.1
Unique NamemRNA_Ecto-sp13_S_contig11831.1577.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11831.1577.1 vs. uniprot
Match: A0A6H5KV34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV34_9PHAE)

HSP 1 Score: 926 bits (2393), Expect = 0.000e+0
Identity = 799/1051 (76.02%), Postives = 819/1051 (77.93%), Query Frame = 1 
Query:    7 EITALAARGVDVSAPFGAGGLSALHRATLWGSTDALRTLLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLSCIVQCPSAPAITTPLCLLRAGAFATAVDAQGTTALDIAVRYGRAVIVREIFSRREGAPRPIPGNLGLLYEAVRGGDAGIVACLVDNGWEGGVPVVAASPQPXXXAVPPSLESRETSGGPALLPVDRRGATESLPAAEAAAGSPXXXXXXXXXXXXGETLSPLMLAADSGRVDVVRALLRGRHGGFPNAGDTRGYTALHFATMRGSVGIAEALLQGAAGFHKGVRGGVNIGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADPD---VTNADGDTALHVAVATRRIGVGQALLRAGASVGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVD--GTESSSXXXXXXXXXXXXXXXXXXXXXXXRTARDKPEGDRRAEIAAVVRVTATVAPRXXXXXXXXXXXXXXXXXXXXXXXAFPNAGRGRCTRVSAAALATSLASPLSKKPSQKRRASTCIAATIRRGGGSPNTRKEGRTPLHFAAMNGRARTAKVLLAAGAPPAHRRNRKXXXXXXXXXXXXXXXXXXXXXXXXXXGGHVDAATAAGDTPLGVALXXXXXDIVVQLLRRGAAVVGRDGKAPCLDIXXXXXXXXXDLTSVLKTLLKDNPAGTGTARVLSAPLHAACRGGGRTLVEALLEKGADINASQDQAGEEEGRRRMLRPLHVAAAHGNAEAVGALTLRGCLLDVKTRDPSG---STPLXXXXXXXXXXXXXXXXXXXXXXXAVPRGQDGKQRATSLARLAADMRRGDMVALLARAIVDRDSSETWAREWAASRGFRVGGLSAATGAVGGAVIGAEXXXXXE-AGTLEQVAATVSRSARAGAAXXXXXXVVGAGEGTGVRKVVQETVS---------------------------------RGERARRRSFLSKGKGGEEVVVLGEARRVGPGRRGPRQRAGL 3033
            EITALAARGVDVSAP GAGGLSALHRATL GS DALRTLL+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   LLLSCIVQCPSAPAITTPLCLLRAGAFATA DAQGTTALDIAVRYGRA IVREIF RREGAPRPIP NLGLLYEAVRGGDAGIVACLVDNGWEGGVPVV ASPQP    VPPSLESRETSGGPA LPV R+G+              XXXXXXXXXXXXGETLSPLMLAADSGRVDVVRALLRGRHGGFPNAGDTRGYTALHFATMRGSVGIAEALLQGAAGFHKGV GG N G  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       VTNADGDTALHVAVATRRIGVGQALLRAGASVG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      G++ S+         XXXXXXXXXXXXX R ARDKP GDRRA++AA VRVT      XXXXXXXXXXXXXXXXXXXXXXX   NAGRGRCTRVSAAALATSLASPLSKKPSQKRRAS   AATIRRGGGSPN RKEGRTPLHFAAMNG    A+VLLAAGAPPAHRRNRK                          GGHV+AATAAGDTPLGVAL     DIVVQ++  G     RD KA CLDI         DLT+VLKTL KDNPAG GTARVLSAPLHAACRGGGRTLVEALLEKGAD+NAS+D                        EAVGALTLRGCLLDVKTRDPSG   STPL      XXXXXXXXXX       AVPRGQDGK+RATSLARLAADMRRGDMVALLARAIVDRDSSETWAREWAASRGFRVGGLSAA GAVGGA +GAE     E AGT+E VAATVSRSARAGAA      VVGAG G GVR                                         RGERARRRSFLS+GKGGEEVVVLGEAR +GPGRRGPRQRAGL
Sbjct:    4 EITALAARGVDVSAPSGAGGLSALHRATLSGSMDALRTLLEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPLLLSCIVQCPSAPAITTPLCLLRAGAFATAADAQGTTALDIAVRYGRAAIVREIFFRREGAPRPIPSNLGLLYEAVRGGDAGIVACLVDNGWEGGVPVVTASPQPPPAVVPPSLESRETSGGPAPLPVGRKGSAXXXXXXXXXXXX-XXXXXXXXXXXXGETLSPLMLAADSGRVDVVRALLRGRHGGFPNAGDTRGYTALHFATMRGSVGIAEALLQGAAGFHKGVGGGENNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTNADGDTALHVAVATRRIGVGQALLRAGASVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGSDHSANAAGASGRGXXXXXXXXXXXXXGRNARDKPGGDRRAKMAAAVRVTXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXNAGRGRCTRVSAAALATSLASPLSKKPSQKRRASAGTAATIRRGGGSPNRRKEGRTPLHFAAMNGSVGAARVLLAAGAPPAHRRNRKRESPLLLAAKGGHAEVVELLLEALGPGGHVNAATAAGDTPLGVALANGHGDIVVQVIGWGV----RDDKALCLDIGRDDRVPPLDLTNVLKTLPKDNPAGAGTARVLSAPLHAACRGGGRTLVEALLEKGADVNASRDPXXXXXXXXXXX-XXXXXXXXXXXEAVGALTLRGCLLDVKTRDPSGWVSSTPLGIAVQEXXXXXXXXXXDAGAAIDAVPRGQDGKERATSLARLAADMRRGDMVALLARAIVDRDSSETWAREWAASRGFRVGGLSAAAGAVGGADVGAEEEEDGEEAGTVEPVAATVSRSARAGAAGAVGRAVVGAGXGRGVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGERARRRSFLSEGKGGEEVVVLGEARTLGPGRRGPRQRAGL 1047
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11831.1577.1 vs. uniprot
Match: D7FVK0_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK0_ECTSI)

HSP 1 Score: 910 bits (2351), Expect = 7.410e-316
Identity = 710/1054 (67.36%), Postives = 732/1054 (69.45%), Query Frame = 1 
Query:    1 ADEITALAARGVDVSAPFGAGGLSALHRATLWGSTDALRT----------------------------LLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLSCIVQCPSAPAITTPLCLLRAGAFATAVDAQGTTALDIAVRYGRAVIVREIFSRREGAPRPIPGNLGLLYEAVRGGDAGIVACLVDNGWEGGVPVVAASPQPXXX---AVPPSLESRETSGGPALLPVDRRGATESLPAAEAAAGSPXXXXXXXXXXXXGETLSPLMLAADSGRVDVVRALLRGRHGGFPNAGDTRGYTALHFATMRGSVGIAEALLQGAAGFHKGVRGGVNIGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADPDVTNADGDTALHVAVATRRIGVGQALLRAGASVGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVDGTESSSXXXXXXXXXXXXXXXXXXXXXXXRTARDKPEGDRRAEIAAVVRVTATVAPRXXXXXXXXXXXXXXXXXXXXXXXAFPNAGRGRCTRVSAAALATSLASPLSKKPSQKRRASTCIAATIRRGGGSPNTRKEGRTPLHFAAMNGRARTAKVLLAAGAPPAHRRNRKXXXXXXXXXXXXXXXXXXXXXXXXXXGGHVDAATAAGDTPLGVALXXXXXDIVVQLLRRGAAVVGRDGKAPCLDIXXXXXXXXXDLTSVLKTLLKDNPAGTGTARVLSAPLHAACRGGGRTLVEALLEKGADINASQDQAGEEEGRRRMLRPLHVAAAHGNAEAVGALTLRGCLLDVKTRDPSGSTPLXXXXXXXXXXXXXXXXXXXXXXXAVPRGQDGKQRATSLARLAADMRRGDMVALLARAIVDRDSSETWAREWAASRGFRVGGLSAATGAVG------------GAVIGAEXXXXXEAGTLEQVAATVSRSARAGAAXXXXXXVVGAGEGTGVRKVVQETVSRGERARRRSFLSKGKGGEEVVVLGEARRVGPGRRGPRQRAGL 3033
            ADEITALAARGVDVSAP GAGGLSALHRATL GSTDALRT                            LL+                                                 LLLSCIVQCPSAPA TTPLCLLRAGA ATA DAQGTTALDIAVRYGRA IVREIFSRREGAPRPI GNLGLLY+AVRGGDAGIVACLV+NGWEGGVPVV AS QPXXX   AVPPSL SRETSG P   PV R+GA  S PAA  AAGSP             ETLSPLMLAADSGRVDVVRALLRGRHGGFPNAGDTRGYTALHFATMRGSVGIAEALLQGAAGF KG  GG N GNG                                                                        DTA                 RAGASVGI       XXXXXXXXXXXXXXXXXXXXXX  AAVDGTESSSXXXXXXXXXXXXXXXXXXXXXXX                            XXXXXXXXXXXXXXXXXXXXXXX  PNAGRGRCTRVSAAALATSLASPLSKKPSQKRRAST  AAT+RRG  SPN RKEGRTPLHFAAMNGR   A+VLLAAGAPPAHRRNRK   XXXXXXXXX              G HVDAATAAG+TPLGVA      D+VVQLLR+GAAVVGRD KAPCLD+  XXXXXXX LTSVLKTLLKDNPAG GTARVLSAPLHAACRGGGRTLVEALLEKGAD+NASQD AGEEEGRRRMLRPLHVAAAHGNAEAVGALTL+GCLLDVKTRDPSGSTPLXXXXXXXXXXXXXXXXXXXXXXXAVPRGQDGK+RATSLARLAADMRRGDMVAL+ARAIVDRDSSETWA EWAASRGFRVGGLSAA G               GAV+GAE     EAGT+E VAATVSR+AR    XXXXXX      GTGV +VVQ TVSR ERA+RRSFLS+GKGGEEV+VLGEARR+ PGRRGPRQR GL
Sbjct:   59 ADEITALAARGVDVSAPSGAGGLSALHRATLSGSTDALRTERLDIGDRSCGNNAPSSRGRVVNGLTAKLLEAGADPDAAETDGGRTALHFAALRSDLAAVQALVAAGAAKEACDLDGRTPLLLSCIVQCPSAPATTTPLCLLRAGAVATAADAQGTTALDIAVRYGRAEIVREIFSRREGAPRPISGNLGLLYQAVRGGDAGIVACLVNNGWEGGVPVVTASLQPXXXXXVAVPPSLRSRETSGAPVPSPVGRKGAAVSSPAAVDAAGSPASVAAVR------ETLSPLMLAADSGRVDVVRALLRGRHGGFPNAGDTRGYTALHFATMRGSVGIAEALLQGAAGFRKGAGGGENNGNGD-----------------------------------------------------------------------DTAXXXXXXXXXXXXXXXXXRAGASVGIANGLGHTXXXXXXXXXXXXXXXXXXXXXXDVAAVDGTESSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPNAGRGRCTRVSAAALATSLASPLSKKPSQKRRASTGTAATVRRGVASPNRRKEGRTPLHFAAMNGRVGAARVLLAAGAPPAHRRNRKRESXXXXXXXXXHAEVVELLLEALRPGTHVDAATAAGETPLGVASANGHDDVVVQLLRKGAAVVGRDDKAPCLDLGWXXXXXXXXLTSVLKTLLKDNPAGAGTARVLSAPLHAACRGGGRTLVEALLEKGADVNASQDPAGEEEGRRRMLRPLHVAAAHGNAEAVGALTLQGCLLDVKTRDPSGSTPLXXXXXXXXXXXXXXXXXXXXXXXAVPRGQDGKERATSLARLAADMRRGDMVALMARAIVDRDSSETWAIEWAASRGFRVGGLSAAAGXXXXXXXXXXXXXXXGAVVGAEEEE--EAGTVEPVAATVSRNARXXXXXXXXXXXXXX-XGTGVGRVVQATVSRSERAQRRSFLSEGKGGEEVLVLGEARRLAPGRRGPRQRTGL 1026
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11831.1577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KV34_9PHAE0.000e+076.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVK0_ECTSI7.410e-31667.36Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11831contigEcto-sp13_S_contig11831:48..5122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score660.6
Seed ortholog evalue8.7e-187
Seed eggNOG ortholog2880.D7FVK0
Model size3099
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-15_003590.1
Cds size2262
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11831.1577.1prot_Ecto-sp13_S_contig11831.1577.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11831 1277..5059 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462624.6461911-UTR-Ecto-sp13_S_contig11831:47..1671681462624.6461911-UTR-Ecto-sp13_S_contig11831:47..167Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11831 48..167 +
1681462624.6558194-UTR-Ecto-sp13_S_contig11831:622..12761681462624.6558194-UTR-Ecto-sp13_S_contig11831:622..1276Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11831 623..1276 +
1681462624.7031236-UTR-Ecto-sp13_S_contig11831:5059..51221681462624.7031236-UTR-Ecto-sp13_S_contig11831:5059..5122Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11831 5060..5122 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462624.6641426-CDS-Ecto-sp13_S_contig11831:1276..13931681462624.6641426-CDS-Ecto-sp13_S_contig11831:1276..1393Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11831 1277..1393 +
1681462624.6726677-CDS-Ecto-sp13_S_contig11831:2102..32751681462624.6726677-CDS-Ecto-sp13_S_contig11831:2102..3275Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11831 2103..3275 +
1681462624.685809-CDS-Ecto-sp13_S_contig11831:3566..39521681462624.685809-CDS-Ecto-sp13_S_contig11831:3566..3952Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11831 3567..3952 +
1681462624.6939204-CDS-Ecto-sp13_S_contig11831:4473..50591681462624.6939204-CDS-Ecto-sp13_S_contig11831:4473..5059Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11831 4474..5059 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11831.1577.1

>prot_Ecto-sp13_S_contig11831.1577.1 ID=prot_Ecto-sp13_S_contig11831.1577.1|Name=mRNA_Ecto-sp13_S_contig11831.1577.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=754bp
MLAADSGRVDVVRALLRGRHGGFPNAGDTRGYTALHFATMRGSVGIAEAL
LQGAAGFHKGVRGGVNIGNGNGDSGVVSVVTAGAGAGAGATAAAAKGAGA
VDAAAAATAAAAAASAGSPAAAAATAPQPPAAADPDVTNADGDTALHVAV
ATRRIGVGQALLRAGASVGIANGLGHTPLHFAAALGLSGFAKELLNRGAD
VAAVDGTESSSSANAAGASGGGGGGGVIVSSAGGRTARDKPEGDRRAEIA
AVVRVTATVAPRRKSSSATSTPSAAAAVAAAAAAAAFPNAGRGRCTRVSA
AALATSLASPLSKKPSQKRRASTCIAATIRRGGGSPNTRKEGRTPLHFAA
MNGRARTAKVLLAAGAPPAHRRNRKGESPLLLAAKGGHAEVVELLLEALG
PGGHVDAATAAGDTPLGVALANGHGDIVVQLLRRGAAVVGRDGKAPCLDI
GRDDKVPPLDLTSVLKTLLKDNPAGTGTARVLSAPLHAACRGGGRTLVEA
LLEKGADINASQDQAGEEEGRRRMLRPLHVAAAHGNAEAVGALTLRGCLL
DVKTRDPSGSTPLGIAVQEGHLEAARALVDAGAAIDAVPRGQDGKQRATS
LARLAADMRRGDMVALLARAIVDRDSSETWAREWAASRGFRVGGLSAATG
AVGGAVIGAEEEEEEEAGTLEQVAATVSRSARAGAAGAVGRAVVGAGEGT
GVRKVVQETVSRGERARRRSFLSKGKGGEEVVVLGEARRVGPGRRGPRQR
AGL*
back to top

mRNA from alignment at Ecto-sp13_S_contig11831:48..5122+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11831.1577.1 ID=mRNA_Ecto-sp13_S_contig11831.1577.1|Name=mRNA_Ecto-sp13_S_contig11831.1577.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5075bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11831:48..5122+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGACGAAATCACTGCGTTGGCTGCCAGGGGGGTCGACGTATCTGCCCC
CTTCGGCGCCGGCGGCCTCTCTGCCCTGCACCGCGCAACTCTTTGGGGTA
GCACGGACGCCCTTCGCACGGTGAAACTACGTAGGCACCTACCACATGAC
TCTCGTTCGGGGTCAAACTCGAGTTATTTTTGCCTTGAGGGCGACCCAAT
TGTGTACGTGGGTTTGCTGATGGGGCAACATGTTCAGTTCGTGCTCTCTC
ACGTTCTGATTCGAGGCAGATGAGTCACACCTGGGCATTCATGCTACGAC
GAGAGCGGGGGGGGTTACGAGCGTTTTCGTATTTCGTCTCAACAAACTCA
ATCATACCGCATGTTCGGTGCTTTGGCCGTTGCCATTTCCCGCACCGCCC
GATCTAGCAGCAAGCACTTTCTATGGAGGCGGTTGTAGACTACAAGACAC
CTTCCCACCAACCCGCTCCGAATCACAAATGAGATGCCTTCAAACGTTCT
TGATTCTCGCGGTCAACCTAAGCAACCCGTGAGTACCCCCCCTTCCCCCC
CTCCTCCTCCGCGTGCCCCCCACAGCTTCTCAAGGCCGGGGCGGACCCCG
ACGCAGCGGAGGCCGATGGCGGGCGAACGGCGCTCCACTTTGCCGCCCTC
CGGTGCGACCTGGCGGCGGTACAAACCCTTGTGACCGCGGGGGCGGACAA
GGAGGCCCGCGACCTCGACGGCCGCACCCCTCTCCTCCTCTCCTGCATCG
TGCAGTGCCCGTCGGCGCCGGCCATAACCACCCCGTTGTGCCTCCTGAGG
GCCGGTGCCTTTGCGACGGCGGTGGACGCTCAGGGCACGACGGCCCTGGA
CATCGCCGTGCGGTACGGCCGCGCTGTGATCGTCCGGGAGATCTTCTCCC
GGAGGGAGGGGGCGCCTCGCCCGATCCCCGGTAACCTGGGGCTCTTGTAT
GAGGCCGTGAGGGGAGGGGACGCCGGGATCGTGGCTTGCCTGGTGGACAA
CGGGTGGGAGGGCGGGGTGCCCGTCGTTGCCGCTTCCCCCCAGCCGCCGC
CGCCGGCGGTCCCGCCGTCGTTGGAGTCGAGAGAGACGTCCGGTGGGCCG
GCGCTATTGCCCGTCGATCGGAGGGGTGCGACTGAATCTTTACCGGCTGC
CGAAGCTGCTGCTGGGTCGCCCTCGTCGGTGGCGGCGGTGGCGGCGGCGG
CGGCGGCTGGTGAGACGCTGTCGCCGCTCATGCTGGCGGCGGACAGCGGG
CGGGTAGACGTGGTCAGGGCTCTCCTACGCGGGCGGCACGGGGGGTTCCC
GAACGCGGGCGACACGCGCGGCTACACGGCGCTACACTTCGCCACGGTAT
GACGGGACGTATTGAGCCTTGCCTCCTTGCCTTGCCTCTCAAGCGTAGCA
ACGTAGGACAGCAGTGTGACACAACGGCATTCAACGATCAAGTCATCGGT
CTTCTTGTCAACAGTCTTGTCCGTGAGTGGGAGGTCACTTTGTTGTAACG
GTTCGGCACGCCCTGTTCCCGGGGCTCGGATATGTCGATAGCATTGCGGA
AAGTGAAGGCTGGCGTAGACTGCGACGCAGTACACTTTGCTGGCGTCAGC
GTTGCTTTGGAGCGGGCTGTTCGCAGACGGGTAAATAGCGGTCGTAGTGT
GACGTAGGACATCTAGCCAATACAAGCGCTTGCTTGAGCCAAACTCCTTC
GCTCGTTTTTTCATGTTGGACGTTCGTGCTTGACTAGCTCAAAAGGACCC
TTTGACAACGTTTCCGGTGGTGTCGCCGTGCTTCACTCACGTTATTCACA
CCGTCTCTCGCTGTACTTTGGAGTACCTGTTTGGACCCCTTGCTTGTTCT
CTCCCTTTCCGCCCTCGTTGTCACTAATTTGCTGTATTTGTTCTTCATGG
TTCATTGGTTCCGGTGCTTCACTGTCTCTGTTGGACACGATGCCCCCCCC
GCGTTCTTTTTCATAGACCTGTCTTACGAGCTTTCGCTAGACCTCTGTCT
TTGGCCCACCATCCCCCCCTTTTCCTCAATACGCCGCGTTTTGTTTCCTC
GCCAGATGCGGGGGTCGGTGGGCATCGCGGAGGCGCTCCTCCAGGGAGCC
GCGGGTTTCCACAAGGGCGTGCGAGGCGGGGTGAACATCGGCAATGGCAA
TGGCGACAGCGGTGTCGTTTCTGTTGTGACCGCTGGTGCTGGTGCTGGTG
CTGGTGCTACTGCTGCTGCTGCCAAAGGTGCTGGTGCTGTTGATGCTGCT
GCTGCTGCTACTGCTGCTGCTGCTGCTGCTTCTGCTGGCTCGCCGGCAGC
GGCGGCGGCGACGGCACCACAGCCACCGGCGGCGGCGGACCCGGACGTGA
CGAACGCGGACGGAGACACCGCCCTGCACGTGGCCGTGGCGACTCGGCGG
ATCGGCGTCGGACAGGCGCTGCTTCGCGCCGGAGCGTCCGTCGGCATCGC
GAACGGGCTTGGGCACACGCCGCTCCACTTCGCGGCGGCGTTGGGGCTCT
CGGGGTTCGCGAAGGAGCTGCTGAACAGGGGGGCGGACGTAGCGGCGGTA
GACGGGACAGAGTCTTCATCTTCCGCCAATGCTGCCGGTGCTTCTGGTGG
TGGGGGTGGGGGTGGTGTTATCGTTAGCTCCGCGGGCGGGAGGACCGCTA
GAGATAAGCCGGAAGGCGACAGGAGGGCCGAGATCGCCGCGGTGGTGAGA
GTCACCGCCACCGTGGCGCCCAGGAGAAAAAGCAGCAGCGCCACCTCTAC
CCCGTCGGCGGCCGCCGCCGTCGCCGCCGCCGCCGCCGCCGCCGCTTTCC
CTAACGCGGGCAGGGGCCGCTGCACCAGGGTGTCCGCCGCCGCCCTCGCC
ACGTCTCTGGCGAGCCCACTGTCGAAGAAGCCAAGCCAAAAGAGAAGGGC
TAGCACATGCATCGCCGCCACCATCCGAAGAGGCGGCGGGAGTCCCAACA
CAAGGAAGGAAGGCCGCACACCCTTGCACTTCGCCGCCATGAACGGCAGG
GCGCGGACGGCGAAAGTGCTCCTGGCGGCGGGCGCGCCGCCGGCGCATCG
GCGGAACCGCAAGGGCGAGTCTCCGTTGCTCCTGGCGGCGAAGGGTGGGC
ACGCGGAGGTGGTGGAGCTTCTGCTCGAGGCGCTGGGACCTGGGGGCCAC
GTGGACGCGGCGACGGCGGCGGGAGACACGCCCCTCGGCGTGGCGTTGGC
GAACGGCCACGGCGATATTGTGGTGCAGGTGATTGGTTGGGGGATTCAGT
ACACACGTTTGTGTTTTTGTTTTCGTCGCAACCGCCACAGACACGACCTT
GTGAGCCAGGAAATTGGGTGGTGGTACGATGGAGGAGTAGACTACGCGCG
ATCGCGAAACATTTCCTTGATCATTTTCTTTTGTTTTTTCGTTGTTTTCA
GAACGCAGGACGACGCTCATGCTTTACACTTCGGCTCCTCCGACGACCTT
CCCCGTCCGCTCTCTCTACTCTTCACTGACCTCCTCGGACCCCCCCCCCC
CTCTTCCTGCTTGATCAAGCTCCTTCGAAGAGGGGCCGCTGTTGTCGGCA
GGGACGGCAAGGCTCCGTGCCTCGACATCGGCAGGGACGACAAGGTTCCG
CCCCTCGACCTCACCAGCGTCTTGAAGACTCTCCTCAAGGACAACCCTGC
CGGCACCGGCACGGCGCGGGTCCTCTCGGCCCCGCTGCACGCCGCCTGCC
GCGGCGGCGGGCGAACATTGGTGGAGGCGTTGCTCGAGAAAGGGGCCGAT
ATCAACGCGTCCCAGGATCAGGCGGGTGAGGAAGAAGGGAGGAGGAGGAT
GCTGAGGCCGCTTCACGTGGCCGCGGCGCACGGGAATGCAGAGGCCGTGG
GCGCGCTGACGCTCCGGGGGTGCCTGCTGGACGTCAAGACGCGGGATCCT
AGCGGGTGGGTGTCGTTTGAAATCGAACGGAATCTGGTCGCCGTGAATAA
GTCATTTATTTTTTCTGTGGTGGTGACGTTGATATGGGAATCTTGTTTCC
GTTGTTGAAGTGTGTGTGTTTCTAAAGTGGTGTGTGGCGGTGCGACTGGC
GTGCCTCTCGGCTACATTCGAAATCGATGAGACAACGGCATCTCCAACTT
GTGCTTCCCCCGACGGGCACGATGACGCCCCACGCTTGTTTTTCGCGTCT
CTGAGTTTACTCTCTCTCTCCCAAGCATGATACTGTACGCTGGCGCTGTG
TGCCGCTTGCTGCACGGAATACGACTTGTTGCTCCAAAACCCTCGCGCTT
GTCAAGAACGACGATGCGATTTCCTCTCACCCCAATGCTTATCCCACGCC
CTAAAGCACCCAGTGCTCGTCAAACGACGGCGATTCTTCCTCTCACCCCA
AAACTTATCCCACGCTGTCAAACACCCCGTGCTTAGTCAAACGACCATAG
CGACGATTATCCTACGTTACACGCAGGAGCACGCCGCTCGGGATCGCCGT
GCAGGAAGGCCACCTGGAGGCCGCCCGCGCGCTGGTCGACGCCGGCGCCG
CCATCGACGCGGTCCCCCGGGGGCAAGACGGGAAGCAGCGGGCGACGTCC
CTCGCCCGGCTGGCGGCGGACATGAGGCGCGGGGACATGGTGGCCCTCCT
GGCCAGGGCAATCGTCGACCGCGACTCGTCAGAAACTTGGGCGAGAGAGT
GGGCCGCTTCCAGGGGGTTTAGGGTCGGCGGCCTAAGTGCCGCTACCGGC
GCTGTCGGCGGGGCCGTTATCGGAGCGGAGGAGGAGGAGGAGGAGGAGGC
GGGGACGCTGGAGCAGGTAGCGGCAACGGTGTCGAGGAGTGCGCGAGCCG
GCGCTGCCGGTGCTGTCGGCAGGGCCGTGGTAGGAGCGGGGGAAGGGACG
GGAGTGCGGAAGGTTGTCCAGGAAACGGTGTCAAGGGGTGAGCGGGCTCG
GCGAAGGTCATTCTTGAGTAAGGGGAAGGGCGGGGAGGAAGTGGTGGTGT
TGGGAGAGGCTCGGAGGGTGGGGCCCGGACGGCGGGGTCCCCGGCAGCGT
GCGGGCCTTTGAGAGAGAGAGCGAGGAGACAGATTGACACAGAGACAGAC
ATGGAGGGACAGCGAGAGTCCGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11831:48..5122+

>mRNA_Ecto-sp13_S_contig11831.1577.1 ID=mRNA_Ecto-sp13_S_contig11831.1577.1|Name=mRNA_Ecto-sp13_S_contig11831.1577.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2262bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11831:48..5122+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGCGGCGGACAGCGGGCGGGTAGACGTGGTCAGGGCTCTCCTACG
CGGGCGGCACGGGGGGTTCCCGAACGCGGGCGACACGCGCGGCTACACGG
CGCTACACTTCGCCACGATGCGGGGGTCGGTGGGCATCGCGGAGGCGCTC
CTCCAGGGAGCCGCGGGTTTCCACAAGGGCGTGCGAGGCGGGGTGAACAT
CGGCAATGGCAATGGCGACAGCGGTGTCGTTTCTGTTGTGACCGCTGGTG
CTGGTGCTGGTGCTGGTGCTACTGCTGCTGCTGCCAAAGGTGCTGGTGCT
GTTGATGCTGCTGCTGCTGCTACTGCTGCTGCTGCTGCTGCTTCTGCTGG
CTCGCCGGCAGCGGCGGCGGCGACGGCACCACAGCCACCGGCGGCGGCGG
ACCCGGACGTGACGAACGCGGACGGAGACACCGCCCTGCACGTGGCCGTG
GCGACTCGGCGGATCGGCGTCGGACAGGCGCTGCTTCGCGCCGGAGCGTC
CGTCGGCATCGCGAACGGGCTTGGGCACACGCCGCTCCACTTCGCGGCGG
CGTTGGGGCTCTCGGGGTTCGCGAAGGAGCTGCTGAACAGGGGGGCGGAC
GTAGCGGCGGTAGACGGGACAGAGTCTTCATCTTCCGCCAATGCTGCCGG
TGCTTCTGGTGGTGGGGGTGGGGGTGGTGTTATCGTTAGCTCCGCGGGCG
GGAGGACCGCTAGAGATAAGCCGGAAGGCGACAGGAGGGCCGAGATCGCC
GCGGTGGTGAGAGTCACCGCCACCGTGGCGCCCAGGAGAAAAAGCAGCAG
CGCCACCTCTACCCCGTCGGCGGCCGCCGCCGTCGCCGCCGCCGCCGCCG
CCGCCGCTTTCCCTAACGCGGGCAGGGGCCGCTGCACCAGGGTGTCCGCC
GCCGCCCTCGCCACGTCTCTGGCGAGCCCACTGTCGAAGAAGCCAAGCCA
AAAGAGAAGGGCTAGCACATGCATCGCCGCCACCATCCGAAGAGGCGGCG
GGAGTCCCAACACAAGGAAGGAAGGCCGCACACCCTTGCACTTCGCCGCC
ATGAACGGCAGGGCGCGGACGGCGAAAGTGCTCCTGGCGGCGGGCGCGCC
GCCGGCGCATCGGCGGAACCGCAAGGGCGAGTCTCCGTTGCTCCTGGCGG
CGAAGGGTGGGCACGCGGAGGTGGTGGAGCTTCTGCTCGAGGCGCTGGGA
CCTGGGGGCCACGTGGACGCGGCGACGGCGGCGGGAGACACGCCCCTCGG
CGTGGCGTTGGCGAACGGCCACGGCGATATTGTGGTGCAGCTCCTTCGAA
GAGGGGCCGCTGTTGTCGGCAGGGACGGCAAGGCTCCGTGCCTCGACATC
GGCAGGGACGACAAGGTTCCGCCCCTCGACCTCACCAGCGTCTTGAAGAC
TCTCCTCAAGGACAACCCTGCCGGCACCGGCACGGCGCGGGTCCTCTCGG
CCCCGCTGCACGCCGCCTGCCGCGGCGGCGGGCGAACATTGGTGGAGGCG
TTGCTCGAGAAAGGGGCCGATATCAACGCGTCCCAGGATCAGGCGGGTGA
GGAAGAAGGGAGGAGGAGGATGCTGAGGCCGCTTCACGTGGCCGCGGCGC
ACGGGAATGCAGAGGCCGTGGGCGCGCTGACGCTCCGGGGGTGCCTGCTG
GACGTCAAGACGCGGGATCCTAGCGGGAGCACGCCGCTCGGGATCGCCGT
GCAGGAAGGCCACCTGGAGGCCGCCCGCGCGCTGGTCGACGCCGGCGCCG
CCATCGACGCGGTCCCCCGGGGGCAAGACGGGAAGCAGCGGGCGACGTCC
CTCGCCCGGCTGGCGGCGGACATGAGGCGCGGGGACATGGTGGCCCTCCT
GGCCAGGGCAATCGTCGACCGCGACTCGTCAGAAACTTGGGCGAGAGAGT
GGGCCGCTTCCAGGGGGTTTAGGGTCGGCGGCCTAAGTGCCGCTACCGGC
GCTGTCGGCGGGGCCGTTATCGGAGCGGAGGAGGAGGAGGAGGAGGAGGC
GGGGACGCTGGAGCAGGTAGCGGCAACGGTGTCGAGGAGTGCGCGAGCCG
GCGCTGCCGGTGCTGTCGGCAGGGCCGTGGTAGGAGCGGGGGAAGGGACG
GGAGTGCGGAAGGTTGTCCAGGAAACGGTGTCAAGGGGTGAGCGGGCTCG
GCGAAGGTCATTCTTGAGTAAGGGGAAGGGCGGGGAGGAAGTGGTGGTGT
TGGGAGAGGCTCGGAGGGTGGGGCCCGGACGGCGGGGTCCCCGGCAGCGT
GCGGGCCTTTGA
back to top