mRNA_Ecto-sp13_S_contig11829.1576.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11829.1576.1
Unique NamemRNA_Ecto-sp13_S_contig11829.1576.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11829.1576.1 vs. uniprot
Match: D7FTS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTS6_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 1.150e-29
Identity = 64/67 (95.52%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:    1 LFAEKRDKIAQMTEMRQGLRRLRLADRLGVAPRDLTQESIEVPREATGRVIGKKRAALTQLEEECRV 201
            LFAEKRDK AQM EMRQGLRRLRLADRLGVAPRDL QESIEVPREATGRVIGKKRAALTQLEEECRV
Sbjct:  104 LFAEKRDKTAQMAEMRQGLRRLRLADRLGVAPRDLAQESIEVPREATGRVIGKKRAALTQLEEECRV 170
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BLAST of mRNA_Ecto-sp13_S_contig11829.1576.1 vs. uniprot
Match: A0A6H5L0D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D2_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 5.800e-29
Identity = 63/67 (94.03%), Postives = 63/67 (94.03%), Query Frame = 1 
Query:    1 LFAEKRDKIAQMTEMRQGLRRLRLADRLGVAPRDLTQESIEVPREATGRVIGKKRAALTQLEEECRV 201
            LF EKRDK AQM EMRQGLRRLRLADRLGVAPRDL QESIEVPREATGRVIGKKRAALTQLEEECRV
Sbjct:  104 LFTEKRDKTAQMAEMRQGLRRLRLADRLGVAPRDLAQESIEVPREATGRVIGKKRAALTQLEEECRV 170
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BLAST of mRNA_Ecto-sp13_S_contig11829.1576.1 vs. uniprot
Match: W7TEY7_9STRA (High density lipoprotein binding protein vigilin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEY7_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.430e-7
Identity = 28/67 (41.79%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:    1 LFAEKRDKIAQMTEMRQGLRRLRLADRLGVAPRDLTQESIEVPREATGRVIGKKRAALTQLEEECRV 201
            L+ E++ K   M E+ + LR+++LA R+GVA  +L +E++EVP E+  RV+G+    L ++EE CRV
Sbjct:  111 LYEERKAKEGAMVELSKALRKMQLAQRVGVAAEELVEETLEVPEESMSRVVGRGGVNLRRIEETCRV 177
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11829.1576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTS6_ECTSI1.150e-2995.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0D2_9PHAE5.800e-2994.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TEY7_9STRA1.430e-741.79High density lipoprotein binding protein vigilin n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11829contigEcto-sp13_S_contig11829:4273..5186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score121.7
Seed ortholog evalue1.3e-25
Seed eggNOG ortholog2880.D7FTS6
Model size201
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.K homology RNA-binding domain
EggNOG OGs28HET@1,2QPSV@2759
Cds size201
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462624.6006002-CDS-Ecto-sp13_S_contig11829:4272..43261681462624.6006002-CDS-Ecto-sp13_S_contig11829:4272..4326Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11829 4273..4326 -
1681462624.6118963-CDS-Ecto-sp13_S_contig11829:5039..51861681462624.6118963-CDS-Ecto-sp13_S_contig11829:5039..5186Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11829 5040..5186 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11829.1576.1prot_Ecto-sp13_S_contig11829.1576.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11829 4273..5186 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11829.1576.1

>prot_Ecto-sp13_S_contig11829.1576.1 ID=prot_Ecto-sp13_S_contig11829.1576.1|Name=mRNA_Ecto-sp13_S_contig11829.1576.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=67bp
LFAEKRDKIAQMTEMRQGLRRLRLADRLGVAPRDLTQESIEVPREATGRV
IGKKRAALTQLEEECRV
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mRNA from alignment at Ecto-sp13_S_contig11829:4273..5186-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11829.1576.1 ID=mRNA_Ecto-sp13_S_contig11829.1576.1|Name=mRNA_Ecto-sp13_S_contig11829.1576.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=914bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11829:4273..5186- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGTTCGCAGAAAAGCGCGACAAGATCGCCCAGATGACCGAGATGCGGCA
GGGGCTCCGCCGCTTGCGGCTGGCAGATCGCCTCGGCGTGGCCCCCCGCG
ATCTAACGCAGGAGAGCATCGAGGTTCCCCGCGAGGCTACCGGAAGAGTG
AGTGCTGAATTGTTCTTGTCACACTCTTCACGTACAAACACACTTCATTT
TTACTATTTCCCGGGAGAGCTGATGCGCGAATTTCTACCGCGAAAGGGTC
GACGGGGGCGACGGGGCGTGCACGGAATGCACAGCAGTAGGGTAGAGCAC
CTGCCGGTCGCTGTGCTTCAGAATGGCGAACGACTAAGCGACCTTCTTGC
GTGCAGTGGGGATCAAGTGTCATTAGCTTTTCTGAGCAGAAAGACAGGGA
TTTCCGCGTGCTTCCAGCCGAAAATAGTGTGAACTTGTCGAGGGAACCAA
ATGTTCGTTCTGTGTGAGAACGCACCTTACTCCTGTCTACGAGCCTGGTG
CTCGCACGGCGGACAAGGGCGTGGGAAACACCTAGCTACCGTCCTCAACA
ACACATAGCAAGCCTACGTCTGATTGCCTGCTTGTTGCTCCTAGTGTGGG
ATAACTACTGTCTTGCCCAACGCCCGATCAGCGACACCAGAGCTGCTTTG
CTCTTGCTTCAATCTGTGTGACGTTTGTACTCCATGCCAACAAATCTGAT
TCCACCACTGCTGCTGGGACAAACGACGGTGGCAACACCGTCTACCAGTA
GGAGTCTTGTTGCCGCCGCCGCCGCCGCCGCCCCGCTACTACTGCTGCTG
CTGCTTCTCTGGGCCCACCACCAGACTCTCACGCCGTCTTGGAAACCAAA
CCTGCTGCAGGTGATCGGGAAGAAGAGAGCGGCGCTTACGCAGCTGGAGG
AAGAGTGCAGGGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11829:4273..5186-

>mRNA_Ecto-sp13_S_contig11829.1576.1 ID=mRNA_Ecto-sp13_S_contig11829.1576.1|Name=mRNA_Ecto-sp13_S_contig11829.1576.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11829:4273..5186- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGTTCGCAGAAAAGCGCGACAAGATCGCCCAGATGACCGAGATGCGGCA
GGGGCTCCGCCGCTTGCGGCTGGCAGATCGCCTCGGCGTGGCCCCCCGCG
ATCTAACGCAGGAGAGCATCGAGGTTCCCCGCGAGGCTACCGGAAGAGTG
ATCGGGAAGAAGAGAGCGGCGCTTACGCAGCTGGAGGAAGAGTGCAGGGT
C
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