mRNA_Ecto-sp13_S_contig11828.1574.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11828.1574.1
Unique NamemRNA_Ecto-sp13_S_contig11828.1574.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11828.1574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11828contigEcto-sp13_S_contig11828:4441..5107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size279
Hectar predicted targeting categorymitochondrion
Exons2
Cds size222
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462624.4591262-UTR-Ecto-sp13_S_contig11828:4440..44451681462624.4591262-UTR-Ecto-sp13_S_contig11828:4440..4445Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11828 4441..4445 +
1681462624.5114686-UTR-Ecto-sp13_S_contig11828:5055..51071681462624.5114686-UTR-Ecto-sp13_S_contig11828:5055..5107Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11828 5056..5107 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462624.481806-CDS-Ecto-sp13_S_contig11828:4445..45201681462624.481806-CDS-Ecto-sp13_S_contig11828:4445..4520Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11828 4446..4520 +
1681462624.4943585-CDS-Ecto-sp13_S_contig11828:4908..50551681462624.4943585-CDS-Ecto-sp13_S_contig11828:4908..5055Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11828 4909..5055 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11828.1574.1prot_Ecto-sp13_S_contig11828.1574.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11828 4446..5055 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11828.1574.1

>prot_Ecto-sp13_S_contig11828.1574.1 ID=prot_Ecto-sp13_S_contig11828.1574.1|Name=mRNA_Ecto-sp13_S_contig11828.1574.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
MLCAFSRRSSRMSRPGAMDLLSYTRVLAPEYFSPLEIQGGPESRVTHDTP
VIRAWFCWIGVLYPQKAFLLREE*
back to top

mRNA from alignment at Ecto-sp13_S_contig11828:4441..5107+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11828.1574.1 ID=mRNA_Ecto-sp13_S_contig11828.1574.1|Name=mRNA_Ecto-sp13_S_contig11828.1574.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=667bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11828:4441..5107+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGAATGCTCTGCGCGTTCTCAAGAAGGAGCTCAAGGATGTCACGCCCA
GGGGCTATGGACTTACTGAGTTATACCAGGGTGAGTGATGTGTGGTGTGG
TTCCTAGGATGGATGTGATCTTCAACACAAATCACGCAACCTGGTAAGGC
TGAACACATAATCCTTACGCTCTCGGGAGCATTCCGAACGACCGCGCGTT
AAGACACTGCCGGTACTTTGAAGCAACTCACACGCGTCCGGTTCACGCCC
TTCACTCTAGTTCTCGTCAATAACGCCTTGGGGCACGTCTCGGAATCATC
CTCTCCCGATGTGTTCGAAACTCCTATCTGTGGAGTCATTTGTAGTTCCC
CTTAGCAGTTTGAAGAATGGCACGTGGACGGGATACTCGTGTTCTTTCAT
CAAGTTTATCTCATGTGCCGTCGCAACCGCAAGAAATCTCATGATGCCTT
CGTTTTTGAACAGGGCAGGTCTTGGCGCCTGAGTACTTTTCGCCCCTTGA
GATCCAGGGTGGACCCGAGTCACGCGTCACGCATGATACCCCTGTGATTC
GCGCTTGGTTTTGTTGGATCGGTGTTCTTTATCCACAGAAAGCCTTTTTG
CTCCGGGAGGAGTAGGTCGACGCTGACATGGATCGACGGCAACCTCCTGG
CTCTTACGATGTACGGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11828:4441..5107+

>mRNA_Ecto-sp13_S_contig11828.1574.1 ID=mRNA_Ecto-sp13_S_contig11828.1574.1|Name=mRNA_Ecto-sp13_S_contig11828.1574.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11828:4441..5107+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCTGCGCGTTCTCAAGAAGGAGCTCAAGGATGTCACGCCCAGGGGC
TATGGACTTACTGAGTTATACCAGGGTCTTGGCGCCTGAGTACTTTTCGC
CCCTTGAGATCCAGGGTGGACCCGAGTCACGCGTCACGCATGATACCCCT
GTGATTCGCGCTTGGTTTTGTTGGATCGGTGTTCTTTATCCACAGAAAGC
CTTTTTGCTCCGGGAGGAGTAG
back to top