mRNA_Ecto-sp13_S_contig11823.1572.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11823.1572.1
Unique NamemRNA_Ecto-sp13_S_contig11823.1572.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11823.1572.1 vs. uniprot
Match: D7FN92_ECTSI (Nucleotidyltransferase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN92_ECTSI)

HSP 1 Score: 744 bits (1922), Expect = 4.730e-256
Identity = 434/496 (87.50%), Postives = 443/496 (89.31%), Query Frame = 1
Query:    1 SISFSTGGMAGSAAGGFGGTSVPSAAIDMSDLNNLVKRVESANQLAMKVDSDDEDDAVDKLLEHQHQMMMRSSSSYSLASNPDAGTQRLDRKESNDFFYMGSIDAGGSNQLPGEGDTQESSPDVANGEVADGDSRRGRDAAVPITIPVPEGSMPSKVWERLQKGGSLLGDPEERMMAEGQDGNTPGSGT--DISRSMFGLSSPPHPPPGXXXNAPRWPSSLAAMFGXXXXXXXXXXNCSAGTVAPSTGPDASXXXXXXSTAMVPAGGVGGGGLSDMEEIALPMDILPSNKQPLAIDRRVDDLLRLLRPASRAEGYRRSVFRFVTRQVKRALGAQCFPVRGYAIQAYLPDEEVGISAFLCHGQERSWFVRVNETLCKVSSEASEEADAEEGSGTRVGGCLEKITVVGEGATPKQEGEDGG-AAVRKEEG--YRHRLSNVNFINMGRVQKIKCVVDNQVAVDIGANQVGDIATVALLEETDQLLGKDHLFKRSLLLIK 1473
            S+SF+TGGMAGSAA GFGGT VPSAAIDMSDLNNLVKRVESANQLAMKVDSDDEDDAVDKLLEHQHQMMMRSSSSYSLASNPDAG QRLDRKESNDFFYMGSIDAGGS QLPGEGDTQESSPDVANGE A GDSRRGR+AAVPITIPVPEGSMPSKVWERL+KGGSLLGDPEERMMAEGQDGNTPGSGT  DISRSMFGLSSPP P   XXX APRWPSSLAA+FGXXXXXXXXXX                XXXXXX            G LSD+EEIALP+DILPSNKQPLAIDRRVDDLLRLLRPA RAEGYRRSVFRFVTRQVKRALGAQCFPV GYAIQAYLPDEEVGISAFLCHGQE+SWFVRVNETLCKVSSEASEEA  EEGSGT VGGC EKIT VGEGATPKQEG DGG AA+RKEEG  YRHRLSNVNFINMGRVQKIKCVVDNQVAVDIGANQVGDIATVALLEETDQLLGKDHLFKRSLLLIK
Sbjct:  322 SMSFTTGGMAGSAAAGFGGTPVPSAAIDMSDLNNLVKRVESANQLAMKVDSDDEDDAVDKLLEHQHQMMMRSSSSYSLASNPDAGMQRLDRKESNDFFYMGSIDAGGSTQLPGEGDTQESSPDVANGEDAAGDSRRGRNAAVPITIPVPEGSMPSKVWERLRKGGSLLGDPEERMMAEGQDGNTPGSGTVKDISRSMFGLSSPPQPXXXXXXXAPRWPSSLAAIFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-LSDVEEIALPLDILPSNKQPLAIDRRVDDLLRLLRPAPRAEGYRRSVFRFVTRQVKRALGAQCFPVGGYAIQAYLPDEEVGISAFLCHGQEKSWFVRVNETLCKVSSEASEEAAEEEGSGTSVGGCPEKITAVGEGATPKQEGGDGGGAAIRKEEGSSYRHRLSNVNFINMGRVQKIKCVVDNQVAVDIGANQVGDIATVALLEETDQLLGKDHLFKRSLLLIK 816          
BLAST of mRNA_Ecto-sp13_S_contig11823.1572.1 vs. uniprot
Match: A0A6H5KVP2_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP2_9PHAE)

HSP 1 Score: 752 bits (1941), Expect = 1.740e-252
Identity = 429/491 (87.37%), Postives = 437/491 (89.00%), Query Frame = 1
Query:    1 SISFSTGGMAGSAAGGFGGTSVPSAAIDMSDLNNLVKRVESANQLAMKVDSDDEDDAVDKLLEHQHQMMMRSSSSYSLASNPDAGTQRLDRKESNDFFYMGSIDAGGSNQLPGEGDTQESSPDVANGEVADGDSRRGRDAAVPITIPVPEGSMPSKVWERLQKGGSLLGDPEERMMAEGQDGNTPGSGTDISRSMFGLSSPPHPPPGXXXNAPRWPSSLAAMFGXXXXXXXXXXNCSAGTVAPSTGPDASXXXXXXSTAMVPAGGVGGGGLSDMEEIALPMDILPSNKQPLAIDRRVDDLLRLLRPASRAEGYRRSVFRFVTRQVKRALGAQCFPVRGYAIQAYLPDEEVGISAFLCHGQERSWFVRVNETLCKVSSEASEEADAEEGSGTRVGGCLEKITVVGEGATPKQEGEDGGAAVRKEEGYRHRLSNVNFINMGRVQKIKCVVDNQVAVDIGANQVGDIATVALLEETDQLLGKDHLFKRSLLLIK 1473
            SISF+TGGMAGSAA GFGGTSVPSAAIDMSDLNNLVKRVESANQLAMKVDSDDEDDAVDKLLEHQHQMMMRSSSSYSLASNPDAG QRLDRKESNDFFYMGSIDAGGS QLPGE DTQESSPDVA GEVADGDSRRGR+AAVPITIPVPEGSMPSKVWERLQKGGSL+GDPEERMMAEGQDGNTPGSGT+ISRSMFGLSSP     G   NAPRWPSSL     XXXXXXXXXX                XXXXXX   MVPA      GLSD+EEIALPMDILPSNKQPLAIDRRVDDLLRLLRPA RAEGYRRSVFRFVTRQVKRALGAQCFPV GYAIQAYLPDEEVGISAFLCHGQE+SWFVR+NETLCKVSSEASEE DAEEG GT VGGC EKIT VGEGATPKQEG    AAVRKE+GYRHRLSNVNFINMGRVQKIKCVVDNQVAVDIGANQVGDIATVALLEETDQLLGKDHLFKRSLLLIK
Sbjct:  399 SISFTTGGMAGSAAAGFGGTSVPSAAIDMSDLNNLVKRVESANQLAMKVDSDDEDDAVDKLLEHQHQMMMRSSSSYSLASNPDAGMQRLDRKESNDFFYMGSIDAGGSTQLPGEEDTQESSPDVAIGEVADGDSRRGRNAAVPITIPVPEGSMPSKVWERLQKGGSLMGDPEERMMAEGQDGNTPGSGTEISRSMFGLSSPXXXXXGAPPNAPRWPSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---MVPAXXXXXXGLSDIEEIALPMDILPSNKQPLAIDRRVDDLLRLLRPAPRAEGYRRSVFRFVTRQVKRALGAQCFPVGGYAIQAYLPDEEVGISAFLCHGQEKSWFVRLNETLCKVSSEASEETDAEEGPGTSVGGCPEKITAVGEGATPKQEGGXXXAAVRKEDGYRHRLSNVNFINMGRVQKIKCVVDNQVAVDIGANQVGDIATVALLEETDQLLGKDHLFKRSLLLIK 886          
BLAST of mRNA_Ecto-sp13_S_contig11823.1572.1 vs. uniprot
Match: A0A7S2RYN3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYN3_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.430e-19
Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = 1
Query:  835 LPMDILPSNKQPLAIDRRVDDLLRLLRPASRAEGYRRSVFRFVTRQVKRALGAQCFPVRGYAIQAYLPDEEVGISAFLCHGQERSWFVR 1101
            LPMD++PS++     D +V +LLRL+ P+  +   R+ VFR +++QVKR LGA C  V  +A + YLPD+E+ ++AFLC GQE+SWF+R
Sbjct:   74 LPMDVIPSHRSATPADTKVGELLRLIAPSDVSNRARQRVFRLISQQVKRTLGAACISVGSFAERTYLPDQEIILAAFLCRGQEKSWFIR 162          
BLAST of mRNA_Ecto-sp13_S_contig11823.1572.1 vs. uniprot
Match: A0A6A7G9I3_9CRUS (Uncharacterized protein n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G9I3_9CRUS)

HSP 1 Score: 90.1 bits (222), Expect = 3.050e-15
Identity = 60/195 (30.77%), Postives = 96/195 (49.23%), Query Frame = 1
Query:  889 VDDLLRLLRPASRAEGYRRSVFRFVTRQVKRALGAQCFPVRGYAIQAYLPDEEVGISAFLCHGQERSWFVRVNETLCKVSSEASEEADAEEGSGTRVGGCLEKITVVGEGATPKQEGEDGGAAVRKEEGYRHRLSNVNFINMGRVQKIKCVVDNQVAVDIGANQVGDIATVALLEETDQLLGKDHLFKRSLLLIK 1473
            V  ++R L P+  +E  R  +FRFV+  V++A+G+Q +P   +A++ YLPD ++ +SAF  H +  SW  RV E L K                      + K T+                          R+ N+ F+N    + +K  +  ++ VDI AN+   ++T+A  EE DQL+GK+HLFKR++LL K
Sbjct:  797 VSMVIRHLLPSEHSESVRFGIFRFVSEIVRKAVGSQVYPHGSFALKTYLPDGDIDLSAFFSHSRTASWAERVTEELMKE---------------------INKPTI----------------------DPLFRVQNIIFVNADP-KLVKSQI-GRITVDISANRTEALSTIAFFEEIDQLIGKNHLFKRTILLSK 946          
BLAST of mRNA_Ecto-sp13_S_contig11823.1572.1 vs. uniprot
Match: A0A0D9VR37_9ORYZ (Uncharacterized protein n=2 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9VR37_9ORYZ)

HSP 1 Score: 82.8 bits (203), Expect = 6.320e-13
Identity = 59/200 (29.50%), Postives = 94/200 (47.00%), Query Frame = 1
Query:  874 AIDRRVDDLLRLLRPASRAEGYRRSVFRFVTRQVKRALGAQCFPVRGYAIQAYLPDEEVGISAFLCHGQERSWFVRVNETLCKVSSEASEEADAEEGSGTRVGGCLEKITVVGEGATPKQEGEDGGAAVRKEEGYRHRLSNVNFINMGRVQKIKCVVDNQVAVDIGANQVGDIATVALLEETDQLLGKDHLFKRSLLLIK 1473
            A ++R  +L+  ++P   +EG RR+V+ +V R +   L  Q F      ++ YLPD ++ ++AF       S    + +T   +  +A E  +                                     K E    R+  V +I+   V+ IKC+VDN + VDI  NQVG + T+  LEE D L+G++HLFKRS++LIK
Sbjct:   25 AAEKRTSELIARIQPNEDSEGRRRAVYDYVRRLIMNCLSCQVFTFGSVPLKTYLPDGDIDVTAF-------SDSEELKDTWADLVRDALEHEE-------------------------------------KSENAEFRVKEVQYIH-AEVKIIKCLVDN-IVVDISFNQVGGLCTLCFLEEVDALIGQNHLFKRSIILIK 178          
BLAST of mRNA_Ecto-sp13_S_contig11823.1572.1 vs. uniprot
Match: A0A6P5GK10_ANACO (uncharacterized protein LOC109724067 n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5GK10_ANACO)

HSP 1 Score: 80.5 bits (197), Expect = 6.700e-13
Identity = 57/200 (28.50%), Postives = 96/200 (48.00%), Query Frame = 1
Query:  874 AIDRRVDDLLRLLRPASRAEGYRRSVFRFVTRQVKRALGAQCFPVRGYAIQAYLPDEEVGISAFLCHGQERSWFVRVNETLCKVSSEASEEADAEEGSGTRVGGCLEKITVVGEGATPKQEGEDGGAAVRKEEGYRHRLSNVNFINMGRVQKIKCVVDNQVAVDIGANQVGDIATVALLEETDQLLGKDHLFKRSLLLIK 1473
            A +RR  D++  +RP   +E  R+SV  +V + +  +LG++ FP     ++ YLPD ++ ++AF   G        +++  C +  E  + +DAE                                           + +V +IN   V+ +KC++DN + VDI  NQ+G + T+  LE  D+ +GKDHLFKRS++LIK
Sbjct:   45 AAERRAADIVARVRPTDDSESKRKSVVAYVQKLIGVSLGSEVFPFGSVPLKTYLPDGDIDLTAF---GSAAPDSTLISDVRCILEYE-EQNSDAE-----------------------------------------FEVKDVQYIN-AEVRLVKCLIDN-IIVDISFNQMGGLCTLCFLELVDRHIGKDHLFKRSIILIK 197          
BLAST of mRNA_Ecto-sp13_S_contig11823.1572.1 vs. uniprot
Match: D8SJ08_SELML (Uncharacterized protein (Fragment) n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SJ08_SELML)

HSP 1 Score: 79.7 bits (195), Expect = 1.390e-12
Identity = 56/202 (27.72%), Postives = 94/202 (46.53%), Query Frame = 1
Query:  871 LAIDRRVDDLLRLLRPASRAEGYRRSVFRFVTRQVKRALGAQCFPVRGYAIQAYLPDEEVGISAFLCHGQ-ERSWFVRVNETLCKVSSEASEEADAEEGSGTRVGGCLEKITVVGEGATPKQEGEDGGAAVRKEEGYRHRLSNVNFINMGRVQKIKCVVDNQVAVDIGANQVGDIATVALLEETDQLLGKDHLFKRSLLLIK 1473
            L  + R  +L+  ++P   +E  RR+V  +V R +++    + F      ++ YLPD ++ ++AF  H   + SW   V   L   + E S++A+                                            R+  V +I    V+ IKC+V+N + VDI  NQ+G + T+  LEE D+L+G+DHLFKRS++L+K
Sbjct:    7 LQAENRTGELITRIQPTKFSEDRRRAVADYVERLIRKCFDCEVFTFGSVPLRTYLPDGDIDLTAFSGHQHLQESWANDVRAVL--EAEERSKDAE-------------------------------------------FRVKEVQYIQAEVVKIIKCLVEN-IVVDISFNQLGGLCTLCFLEEVDRLIGRDHLFKRSIILVK 162          
BLAST of mRNA_Ecto-sp13_S_contig11823.1572.1 vs. uniprot
Match: A0A199VTE1_ANACO (Uncharacterized protein n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199VTE1_ANACO)

HSP 1 Score: 80.5 bits (197), Expect = 2.370e-12
Identity = 57/200 (28.50%), Postives = 96/200 (48.00%), Query Frame = 1
Query:  874 AIDRRVDDLLRLLRPASRAEGYRRSVFRFVTRQVKRALGAQCFPVRGYAIQAYLPDEEVGISAFLCHGQERSWFVRVNETLCKVSSEASEEADAEEGSGTRVGGCLEKITVVGEGATPKQEGEDGGAAVRKEEGYRHRLSNVNFINMGRVQKIKCVVDNQVAVDIGANQVGDIATVALLEETDQLLGKDHLFKRSLLLIK 1473
            A +RR  D++  +RP   +E  R+SV  +V + +  +LG++ FP     ++ YLPD ++ ++AF   G        +++  C +  E  + +DAE                                           + +V +IN   V+ +KC++DN + VDI  NQ+G + T+  LE  D+ +GKDHLFKRS++LIK
Sbjct:   45 AAERRAADIVARVRPTDDSESKRKSVVAYVQKLIGVSLGSEVFPFGSVPLKTYLPDGDIDLTAF---GSAAPDSTLISDVRCILEYE-EQNSDAE-----------------------------------------FEVKDVQYIN-AEVRLVKCLIDN-IIVDISFNQMGGLCTLCFLELVDRHIGKDHLFKRSIILIK 197          
BLAST of mRNA_Ecto-sp13_S_contig11823.1572.1 vs. uniprot
Match: A0A6V7PQJ9_ANACO (Uncharacterized protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7PQJ9_ANACO)

HSP 1 Score: 80.5 bits (197), Expect = 2.770e-12
Identity = 57/200 (28.50%), Postives = 96/200 (48.00%), Query Frame = 1
Query:  874 AIDRRVDDLLRLLRPASRAEGYRRSVFRFVTRQVKRALGAQCFPVRGYAIQAYLPDEEVGISAFLCHGQERSWFVRVNETLCKVSSEASEEADAEEGSGTRVGGCLEKITVVGEGATPKQEGEDGGAAVRKEEGYRHRLSNVNFINMGRVQKIKCVVDNQVAVDIGANQVGDIATVALLEETDQLLGKDHLFKRSLLLIK 1473
            A +RR  D++  +RP   +E  R+SV  +V + +  +LG++ FP     ++ YLPD ++ ++AF   G        +++  C +  E  + +DAE                                           + +V +IN   V+ +KC++DN + VDI  NQ+G + T+  LE  D+ +GKDHLFKRS++LIK
Sbjct:   51 AAERRAADIVARVRPTDDSESKRKSVVAYVQKLIGVSLGSEVFPFGSVPLKTYLPDGDIDLTAF---GSAAPDSTLISDVRCILEYE-EQNSDAE-----------------------------------------FEVKDVQYIN-AEVRLVKCLIDN-IIVDISFNQMGGLCTLCFLELVDRHIGKDHLFKRSIILIK 203          
BLAST of mRNA_Ecto-sp13_S_contig11823.1572.1 vs. uniprot
Match: UPI000900E2E3 (uncharacterized protein LOC109159045 n=2 Tax=Ipomoea TaxID=4119 RepID=UPI000900E2E3)

HSP 1 Score: 80.1 bits (196), Expect = 3.730e-12
Identity = 57/193 (29.53%), Postives = 92/193 (47.67%), Query Frame = 1
Query:  895 DLLRLLRPASRAEGYRRSVFRFVTRQVKRALGAQCFPVRGYAIQAYLPDEEVGISAFLCHGQERSWFVRVNETLCKVSSEASEEADAEEGSGTRVGGCLEKITVVGEGATPKQEGEDGGAAVRKEEGYRHRLSNVNFINMGRVQKIKCVVDNQVAVDIGANQVGDIATVALLEETDQLLGKDHLFKRSLLLIK 1473
            D+++ ++P + +   RR+V  +V R ++  LG + FP     ++ YLPD ++ ++AF C   E +    VN+ +  +                                    EGED   A          + +V  I    V+ +KC+V N + VDI  NQ+G + T+  LE+ DQL+GKDHLFKRS++LIK
Sbjct:   47 DIIQKVQPTTVSAERRRAVIEYVQRLIRGTLGLEVFPYGSVPLKTYLPDGDIDLTAFGCPMVEDAL---VNDLVSVL------------------------------------EGEDQNMAAE------FTVKDVQLIR-AEVKLVKCIVQN-IVVDISFNQIGGLCTLCFLEQVDQLIGKDHLFKRSIILIK 192          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11823.1572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN92_ECTSI4.730e-25687.50Nucleotidyltransferase family protein n=1 Tax=Ecto... [more]
A0A6H5KVP2_9PHAE1.740e-25287.37PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A7S2RYN3_9STRA2.430e-1948.31Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6A7G9I3_9CRUS3.050e-1530.77Uncharacterized protein n=1 Tax=Hirondellea gigas ... [more]
A0A0D9VR37_9ORYZ6.320e-1329.50Uncharacterized protein n=2 Tax=Leersia perrieri T... [more]
A0A6P5GK10_ANACO6.700e-1328.50uncharacterized protein LOC109724067 n=2 Tax=Anana... [more]
D8SJ08_SELML1.390e-1227.72Uncharacterized protein (Fragment) n=2 Tax=Selagin... [more]
A0A199VTE1_ANACO2.370e-1228.50Uncharacterized protein n=1 Tax=Ananas comosus Tax... [more]
A0A6V7PQJ9_ANACO2.770e-1228.50Uncharacterized protein n=1 Tax=Ananas comosus var... [more]
UPI000900E2E33.730e-1229.53uncharacterized protein LOC109159045 n=2 Tax=Ipomo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11823contigEcto-sp13_S_contig11823:2..4807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score743.8
Seed ortholog evalue5e-212
Seed eggNOG ortholog2880.D7FN92
Model size1473
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG1906@2759
Ec32 ortholog descriptionnucleotidyltransferase family protein
Ec32 orthologEc-15_003420.1
Cds size1449
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11823.1572.1prot_Ecto-sp13_S_contig11823.1572.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11823 26..4807 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462624.291745-UTR-Ecto-sp13_S_contig11823:1..251681462624.291745-UTR-Ecto-sp13_S_contig11823:1..25Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11823 2..25 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462624.3012042-CDS-Ecto-sp13_S_contig11823:25..1061681462624.3012042-CDS-Ecto-sp13_S_contig11823:25..106Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11823 26..106 +
1681462624.309116-CDS-Ecto-sp13_S_contig11823:542..6981681462624.309116-CDS-Ecto-sp13_S_contig11823:542..698Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11823 543..698 +
1681462624.321525-CDS-Ecto-sp13_S_contig11823:1397..14661681462624.321525-CDS-Ecto-sp13_S_contig11823:1397..1466Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11823 1398..1466 +
1681462624.3321087-CDS-Ecto-sp13_S_contig11823:1852..20891681462624.3321087-CDS-Ecto-sp13_S_contig11823:1852..2089Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11823 1853..2089 +
1681462624.3418927-CDS-Ecto-sp13_S_contig11823:2610..30151681462624.3418927-CDS-Ecto-sp13_S_contig11823:2610..3015Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11823 2611..3015 +
1681462624.349823-CDS-Ecto-sp13_S_contig11823:3872..40221681462624.349823-CDS-Ecto-sp13_S_contig11823:3872..4022Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11823 3873..4022 +
1681462624.357821-CDS-Ecto-sp13_S_contig11823:4456..48071681462624.357821-CDS-Ecto-sp13_S_contig11823:4456..4807Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11823 4457..4807 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11823.1572.1

>prot_Ecto-sp13_S_contig11823.1572.1 ID=prot_Ecto-sp13_S_contig11823.1572.1|Name=mRNA_Ecto-sp13_S_contig11823.1572.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=483bp
MAGSAAGGFGGTSVPSAAIDMSDLNNLVKRVESANQLAMKVDSDDEDDAV
DKLLEHQHQMMMRSSSSYSLASNPDAGTQRLDRKESNDFFYMGSIDAGGS
NQLPGEGDTQESSPDVANGEVADGDSRRGRDAAVPITIPVPEGSMPSKVW
ERLQKGGSLLGDPEERMMAEGQDGNTPGSGTDISRSMFGLSSPPHPPPGA
PPNAPRWPSSLAAMFGGGGGGGGGGSNCSAGTVAPSTGPDASGGGGSGST
AMVPAGGVGGGGLSDMEEIALPMDILPSNKQPLAIDRRVDDLLRLLRPAS
RAEGYRRSVFRFVTRQVKRALGAQCFPVRGYAIQAYLPDEEVGISAFLCH
GQERSWFVRVNETLCKVSSEASEEADAEEGSGTRVGGCLEKITVVGEGAT
PKQEGEDGGAAVRKEEGYRHRLSNVNFINMGRVQKIKCVVDNQVAVDIGA
NQVGDIATVALLEETDQLLGKDHLFKRSLLLIK
back to top

mRNA from alignment at Ecto-sp13_S_contig11823:2..4807+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11823.1572.1 ID=mRNA_Ecto-sp13_S_contig11823.1572.1|Name=mRNA_Ecto-sp13_S_contig11823.1572.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4806bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11823:2..4807+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGATCTCGTTTAGTACCGGCGGTATGGCGGGGTCGGCGGCGGGCGGGTT CGGGGGGACGTCGGTCCCCTCGGCGGCCATCGACATGTCGGACTTGAACA ACCTGGTGGGTGGGTGGGAGGTTGGGGAAAACCCTGTCGCTTACGTGTGT TGGAATCTTACCCGTATTCCTTAGTTGTGTTGGGTTGTGTTGTGTTGGTT CGGGTGTGTTCGTAAGGATTCGTTGCTTTTGCGTCTAGGTCGAACATTTT TCGGTTTGGAGTATTTTGGGGGGGCTCGTTGGTGACGAAGGCTTGAGAGG GCGGAGATCGTCTTTGTCCATGGCCGCCGAGCGCCTCGCATGGCAAGAAC GGACATGCATCCGAGTCATATGCCACGGCGCCACAGGGCCTCCTGTTTTT TGGTGGACTTCCGCAGCTAAGAACAGGATTGTTCGATCATCTGTTGCGCG TGCCACGTTGAAGCCCTCCATCATCGCAACTAATTTTCCATGGGCCATTG CCACGAGAACAACACCGCGATAACGATTACGACAACGATAGGTGAAGCGC GTGGAGAGCGCCAATCAGCTGGCGATGAAGGTGGACAGCGACGACGAGGA CGACGCCGTCGACAAGCTCCTCGAGCACCAGCACCAGATGATGATGCGCT CGTCCTCCTCCTACTCGCTCGCCTCCAACCCCGACGCCGGCACGCAGGTA GGCCCCCCCCGTCCGCGTGCCGTTCAGAGGAGAGGACTATACAACCGCGT GCGATACAAAGGAAAGGTGGAACGCGGCATTGAGTCGCGGGAATTAATGA CACAGGTTGCCTTCAGACAGCAGCAGGAACAGCCGTGGGTTGAGTGCTTC GGCCCCGATGAACCAATGTATTCCGTGTTACCTGTGGAGGGGTAAGGGTG CGGCTGATGTGCTTTTCTGTCGTACGCCACGCGTTTGTTGATTGTTTCCC TTGTTTCTCCTCGCCGTTCTTTGGTTCCCCTCTCTCGCTCTTTTTTGTCT TGTTTTGGTGTACTTGCAGCGCGACAGTTTATTTGCCGGTCTTGTCTTCT GTTGCAATGCGTCTCCGGACGGTTTTTTGGTGAATCATGATCACTTGCGA ATCGCACGCTTCGGCGGCGAAGTTCCATTCAGGATACTGCCCTCTCAGCT CTGGAGGGCATCGTGTTGGCCTCACGGGTAACGGGGAACTGTGGTTTGAT TCCGGAGAGTGTTTGTTTTTGTTTATTTTGCCGCTTTGTTGTCCTGTCTC CAACGTCTATGTTATTCTTGTCCGACCAGCGGCCGAGCTACGTGTGTGCG CGTGTGTTTCTGTCTCTCGCTTTTGTGTTGTTTCACTGGTTGATGTTGGT GTTGACTCGCGCGATATCTTTGGGGTCCTGTCTCTGTCCCATCCAGCGCC TGGACCGAAAGGAGTCGAACGATTTCTTCTACATGGGCAGCATCGATGCG GGAGGGAGCAACCAGGTGTGTTTTCTGGTAAAAAATAGTACATTTGTGTA CATCAAGAGTGGATGCGAAGCAGTAGAGCATGCACGTCAGCGTGTCCCTT TTGTTTCTTCAACTGACATATTTGCTGAGGTTTTGATTGCTGTTTCTTCA AATGCCACCACCAGCCTCTGATTTTCCTTCTCTTGTTTGTTTTTGTGTTA TTAGTATGACAAAACAAATTCATTTATCTACAGAAAAGAGTCTTTTTTAA GATAGATTAGCGGTGAATTCATGGCGTGAGCAGAAACTACTTTTAGTTCT ACGATTTCTCTAATTTGTCAACCGGCACACCACCAGCTCACAATTCAACC AGCCTCGAACTTCCGTCCTGTTTTGTTTTGTTTTGGTTCGTGAACCACCA GCTCCCAGGGGAAGGGGACACGCAAGAATCATCCCCGGACGTTGCAAACG GCGAGGTCGCCGACGGGGACAGCAGGAGAGGTCGGGACGCCGCCGTGCCG ATCACCATCCCCGTTCCCGAGGGGTCGATGCCTTCCAAGGTGTGGGAGAG GCTTCAGAAGGGGGGTTCGCTGCTGGGGGACCCGGAGGAGAGGATGATGG CGGAGGGGCAGGACGGCAACACCCCTGGCTCCGGGACGGTCAAGGCGAGT CGTCGTCGGCGTTGGTCGTTGGCTCTGTTGTTGTTTTTCTTGTTTTGTAA AGGTATCCAACGGGTTCTATATCCTTGGAAGCTCAGCGTGGCGGTGTGTA CCTCTTAAAAGGATCTTCACCGTTGATTATTTTGGGGTATGGTGTCACTA TGTAAAGATAAAGATTTTCGGGGGGATGATCTATCGCGGCCTGTTACTGT TGTGGTCTCTGGGTGACGCAGAATGAAGGTTGCCCCCCGGCCCCTTTCGT TGAGCAGGCGCACAGTAAGGCTGCCCCGGTCGCACCCCGCTCCGCATTTT CTCTCTCGCTGGGAGTGACATGATGCCAAGTAGGTATTTGTGCTTCCTGT TTACCCGTCTAGTGTTCCCTCAAACCCTCCTCTTCGCCCAAACCCTTTCT CTCCCCCCCTTCATAACATGATTCACTACCTGCTCTTCCCCCTTATCGGT AGTTGCCTCCATGTAAACCCGTCCCCGGCCCCCATGTGGATCCTCTACTC CCGCAACAGGACATCTCCCGCTCAATGTTTGGACTGTCCAGCCCGCCCCA CCCCCCACCTGGCGCACCGCCGAACGCCCCCCGCTGGCCGTCCTCCCTCG CGGCAATGTTCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGTAGCAATTGC AGTGCCGGTACCGTCGCCCCCTCCACCGGTCCTGATGCCTCGGGCGGCGG CGGTAGCGGTAGCACCGCGATGGTGCCTGCTGGCGGTGTCGGCGGGGGGG GTCTGTCGGACATGGAGGAGATCGCCCTGCCGATGGACATCCTGCCGAGC AACAAGCAGCCGCTGGCGATCGACCGCAGGGTGGACGACCTGCTTAGGCT GCTCAGGCCGGCGTCGAGGGCGGAGGGGTACCGTAGGAGCGTTTTCCGGT TCGTGACGAGACAGGTGCGTTCGCGCTGGAGGGGGAGGGGGGGAATTAGT CATAGCGGTGATGCCGTAGTCGTTAAATCGTCAACCTCGCGAGCAGGAGG GGGGTGATAGCGTTCGCGAGGATGTACAGCTTGGATTACGAGGTGGGGTT AGAGGCAAGGATACGAAACCCTTTACTCTATTTCAAAGAATTAAGAAAAT AGAATCCTCTCCTCTCGATTTCAAAGATTAAAAATAAAATCCTCGCGAAG GAGGAGGAGGAGGGAGGGGGGGGCGTACTCTTGCAAACGCATGCTGTAGT CGTTAGACCATGGCCCTCGGATTCCTACAATGGGATGGAGGAACGGGTGC TGGGTTTACGCCGGCCCTATGCTTCAACAAGGATGGGGGGGGGGGGGCGT ACTCTTATTTTTTTGCATGCCGAGGCCATGGGGATTCAGGGGTCTGTTGG GGTTTCAGTTGGCGTTGATGGTGCAACCCTTGAGTAGTTTGCCGCTTTTT TCGTTTTTGAAAGCTCTGTCGTACAACTCGCGGGTACTTTGCCCGAATTC TGCTGCTACCCATGTAAGATGCGGGTGGTGTAACTCGGAGGCGATGATGA GCGGAATGCTAAATAGATAGGCAGCGACTCAGAGACGATGATAAGTCCGA TGCTGCTGTCCCTCCCCTCTTCATGTTGAGACCCGTTGACTCCGCGCGCG CTGACTGACATGGGCAATAACATTTTTGCACCCCGCGTCCGTCTTGACGT GTACGGTAGCCGGGTGGATCGTTTTTCTTCTTCTCGCGCAACAAAGCATT GACGAGTCCTAATCGTTTCATCTGTCTTTCCCCCTGTTAACTACACCACA TCATATCGCAACCTTGACCAGGTAAAGCGGGCTCTGGGGGCCCAGTGCTT TCCCGTTAGGGGGTACGCCATCCAGGCCTACCTTCCCGACGAGGAGGTGG GCATCTCGGCGTTCCTGTGCCACGGCCAGGAGAGGAGCTGGTTCGTGCGC GTGAACGAGACGCTCTGCAAGGTAAGTTGTTCGATGCCCTTGTGTTTTGA CATCCGTGTGTTGTTGAAGTAGTTGACATCAAGTCGTTGACGTCAGTTCG TGTGTCCCATGTATTGAGCTTTATGTCTTCTTGCATTTTTTTTTTATCGA TTTTTTGAAATCGTTCATGTCAAGTCGTGATGTCGTCCCTCCGGCTGTTT TTCCTGTCGCGGGTCGTCTCCGTGTCGCAATTGGTACATTCGTCCCGCCC ACGGGTAACGTGCGGCTGTGACCGCCACTGCGAACCTGGACTCTGTACAT GTATTACAATCTGCCGTCCGTGATTGCGCGTCTCTTGTGTATGTGGTGAT TTCTCCCTTCTTCCTTTATGTGTGATAAGCAAACAAAATTTAGTGGTTTC CTGTCTCTTGGTATCTAGTGCAAATTCTCTCGTTGCTATGTTTCTGCTGA AAAAGGTTTCCAGTGAGGCTTCCGAGGAGGCGGATGCGGAGGAGGGGTCG GGGACAAGGGTCGGCGGTTGCCTCGAAAAGATCACGGTCGTCGGTGAGGG GGCTACGCCGAAGCAGGAGGGGGAGGATGGCGGCGCCGCAGTCAGGAAGG AGGAAGGGTACCGCCACCGTCTGAGCAACGTGAACTTCATCAACATGGGC CGCGTCCAGAAGATCAAGTGCGTGGTGGACAACCAGGTGGCGGTGGACAT CGGCGCTAACCAGGTCGGGGACATAGCCACCGTGGCCCTGCTTGAGGAGA CCGACCAGCTGCTCGGAAAGGACCACCTGTTCAAGCGGAGCCTCCTTCTC ATCAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11823:2..4807+

>mRNA_Ecto-sp13_S_contig11823.1572.1 ID=mRNA_Ecto-sp13_S_contig11823.1572.1|Name=mRNA_Ecto-sp13_S_contig11823.1572.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1449bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11823:2..4807+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGGGTCGGCGGCGGGCGGGTTCGGGGGGACGTCGGTCCCCTCGGC
GGCCATCGACATGTCGGACTTGAACAACCTGGTGAAGCGCGTGGAGAGCG
CCAATCAGCTGGCGATGAAGGTGGACAGCGACGACGAGGACGACGCCGTC
GACAAGCTCCTCGAGCACCAGCACCAGATGATGATGCGCTCGTCCTCCTC
CTACTCGCTCGCCTCCAACCCCGACGCCGGCACGCAGCGCCTGGACCGAA
AGGAGTCGAACGATTTCTTCTACATGGGCAGCATCGATGCGGGAGGGAGC
AACCAGCTCCCAGGGGAAGGGGACACGCAAGAATCATCCCCGGACGTTGC
AAACGGCGAGGTCGCCGACGGGGACAGCAGGAGAGGTCGGGACGCCGCCG
TGCCGATCACCATCCCCGTTCCCGAGGGGTCGATGCCTTCCAAGGTGTGG
GAGAGGCTTCAGAAGGGGGGTTCGCTGCTGGGGGACCCGGAGGAGAGGAT
GATGGCGGAGGGGCAGGACGGCAACACCCCTGGCTCCGGGACGGACATCT
CCCGCTCAATGTTTGGACTGTCCAGCCCGCCCCACCCCCCACCTGGCGCA
CCGCCGAACGCCCCCCGCTGGCCGTCCTCCCTCGCGGCAATGTTCGGCGG
CGGCGGCGGCGGCGGCGGCGGAGGTAGCAATTGCAGTGCCGGTACCGTCG
CCCCCTCCACCGGTCCTGATGCCTCGGGCGGCGGCGGTAGCGGTAGCACC
GCGATGGTGCCTGCTGGCGGTGTCGGCGGGGGGGGTCTGTCGGACATGGA
GGAGATCGCCCTGCCGATGGACATCCTGCCGAGCAACAAGCAGCCGCTGG
CGATCGACCGCAGGGTGGACGACCTGCTTAGGCTGCTCAGGCCGGCGTCG
AGGGCGGAGGGGTACCGTAGGAGCGTTTTCCGGTTCGTGACGAGACAGGT
AAAGCGGGCTCTGGGGGCCCAGTGCTTTCCCGTTAGGGGGTACGCCATCC
AGGCCTACCTTCCCGACGAGGAGGTGGGCATCTCGGCGTTCCTGTGCCAC
GGCCAGGAGAGGAGCTGGTTCGTGCGCGTGAACGAGACGCTCTGCAAGGT
TTCCAGTGAGGCTTCCGAGGAGGCGGATGCGGAGGAGGGGTCGGGGACAA
GGGTCGGCGGTTGCCTCGAAAAGATCACGGTCGTCGGTGAGGGGGCTACG
CCGAAGCAGGAGGGGGAGGATGGCGGCGCCGCAGTCAGGAAGGAGGAAGG
GTACCGCCACCGTCTGAGCAACGTGAACTTCATCAACATGGGCCGCGTCC
AGAAGATCAAGTGCGTGGTGGACAACCAGGTGGCGGTGGACATCGGCGCT
AACCAGGTCGGGGACATAGCCACCGTGGCCCTGCTTGAGGAGACCGACCA
GCTGCTCGGAAAGGACCACCTGTTCAAGCGGAGCCTCCTTCTCATCAAG
back to top