mRNA_Ecto-sp13_S_contig1182.1571.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1182.1571.1
Unique NamemRNA_Ecto-sp13_S_contig1182.1571.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1182.1571.1 vs. uniprot
Match: D8LMR0_ECTSI (MOSC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMR0_ECTSI)

HSP 1 Score: 449 bits (1156), Expect = 1.180e-157
Identity = 217/227 (95.59%), Postives = 221/227 (97.36%), Query Frame = 1
Query:    1 ASLEVPVVRTVGAGGPAAGGELVEVGIWKDMCQAIDQGDAAASWLQAFLGVDNLRLVRMKDGFVRPTDPGYGTGFRAGFADGFPILLAAEESLEELNSRIAATGDGEQATVGMDRFRPNIVVRGWGPFAEDDWTKIRVGRIGMRTPKPCSRCQIPGINQSTLEVRKEPKQTLDTFRTGSHVARWNEKWSKDVFFGMNVLHESAGVLRVGDDVDVLRAASKASAKKTQ 681
            ASLEVPVVR VGAGGPAAGGELVEVG+WKD CQAIDQGDAAASWLQAFLGVDNLRLVRMKDGFVRPTDPGYGTGFR GFADGFP+LL AEESLEELNSRIAATGDGEQA VGMDRFRPNIVVRGWGPFAEDDWTKIRVGRIGMRTPKPCSRCQIPGINQSTLEVRKEP+QTLDTFRTGSHVARWNEKWSKDVFFGMNVLHES GVLRVG+DVDVLRAASKASAKKTQ
Sbjct:  132 ASLEVPVVRKVGAGGPAAGGELVEVGVWKDTCQAIDQGDAAASWLQAFLGVDNLRLVRMKDGFVRPTDPGYGTGFRTGFADGFPMLLVAEESLEELNSRIAATGDGEQAAVGMDRFRPNIVVRGWGPFAEDDWTKIRVGRIGMRTPKPCSRCQIPGINQSTLEVRKEPRQTLDTFRTGSHVARWNEKWSKDVFFGMNVLHESTGVLRVGNDVDVLRAASKASAKKTQ 358          
BLAST of mRNA_Ecto-sp13_S_contig1182.1571.1 vs. uniprot
Match: A0A835Z5C1_9STRA (MOSC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5C1_9STRA)

HSP 1 Score: 216 bits (549), Expect = 1.220e-65
Identity = 108/200 (54.00%), Postives = 134/200 (67.00%), Query Frame = 1
Query:   55 GGELVEVGIWKDMCQAIDQGDAAASWLQAFLGVDNLRLVRMKDGFVRPTDPGYGTGFRAGFADGFPILLAAEESLEELNSRIAATGDGEQATVGMDRFRPNIVVRGWGPFAEDDWTKIRVGRIGMRTPKPCSRCQIPGINQST-LEVRKEPKQTLDTFRTGSHVARWNEKWSKDVFFGMNVLHESA-GVLRVGDDVDVLR 648
            G + V VG+W D C  IDQG+  A+WL   LG   LRL+R  D F R TDP YG GF   ++DGFP+LLA+EESLE+LN+R+A         +GM+RFRPN+VV G G +AED WTK+ VG + MR  KPC RCQ+P I+QST  +   EP  TL  FRTG+H+   +EK +  VFFG NVLHE   G LRVGD V+VLR
Sbjct:  146 GAKEVPVGVWGDQCTGIDQGEETATWLSRCLGEPGLRLLRYDDAFTRGTDPAYGRGFFTAYSDGFPLLLASEESLEDLNARLAQP-------IGMERFRPNVVVEGMGAWAEDAWTKVAVGDVVMRVVKPCDRCQVPTIDQSTGTKTGAEPTATLRAFRTGAHLGMADEKVASAVFFGQNVLHEGGRGALRVGDRVEVLR 338          
BLAST of mRNA_Ecto-sp13_S_contig1182.1571.1 vs. uniprot
Match: A0A7S2W2F0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W2F0_9STRA)

HSP 1 Score: 199 bits (506), Expect = 2.320e-59
Identity = 94/196 (47.96%), Postives = 131/196 (66.84%), Query Frame = 1
Query:   67 VEVGIWKDMCQAIDQGDAAASWLQAFLGVDNLRLVRMKDGFVRPTDPGYGTGFRAGFADGFPILLAAEESLEELNSRIAATGDGEQATVGMDRFRPNIVVRGWGPFAEDDWTKIRVGRIGMRTPKPCSRCQIPGINQSTLEVRKEPKQTLDTFRTGSHVARWNEK--WSKDVFFGMNVLHESAGVLRVGDDVDVLR 648
            V V +W    + +DQGD AA WL +FL  D LRLVR  DG++R TDP +  G+R  ++DGFP+L+A+EESL ELN R+  +    +  + M+RFRPN+V++G GPF ED+WTKI  G + M   KPC+RC+IP  +Q+T EV +EP  TL  FR G  +    EK  W+ +VFFG N +  S+GV+ VGD+V V++
Sbjct:  144 VRVTVWSTPYRGVDQGDVAAKWLSSFLQRDGLRLVRFPDGYIRETDPEFAKGYRTAYSDGFPLLVASEESLGELNRRMGKS----KPDIPMNRFRPNVVLKGGGPFCEDNWTKIHCGDLSMLIVKPCTRCKIPTTDQATAEVSEEPTATLKKFRAGKDLGPGFEKSSWADEVFFGQNAVTTSSGVIAVGDEVRVVK 335          
BLAST of mRNA_Ecto-sp13_S_contig1182.1571.1 vs. uniprot
Match: A0A7S2UVY0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVY0_9STRA)

HSP 1 Score: 188 bits (477), Expect = 8.550e-57
Identity = 95/186 (51.08%), Postives = 120/186 (64.52%), Query Frame = 1
Query:   79 IWKDMCQAIDQGDAAASWLQAFLGVDNLRLVRMKDGFVRPTDPGYGTGFRAGFADGFPILLAAEESLEELNSRIAATGDGEQATVGMDRFRPNIVVRGWGPFAEDDWTKIRVGRIGMRTPKPCSRCQIPGINQSTLEVR-KEPKQTLDTFRTGSHVARWNEKWSKDVFFGMNVLHESAGVLRVGDD 633
            +W D  + +DQG  AA WL  FLG   +RL R + GFVRPTDP Y  G++ GFADGFP L+A+E SL +LN R+  +       V MDRFRPNIV+ G   +AED W KI VG + MR  KPCSRC+IP I QST +V  KEP +T+  FR+G  +    E    DVFFG N++HE  G ++VGDD
Sbjct:   22 VWGDRVEGLDQGQEAADWLSQFLG-QRVRLARFRPGFVRPTDPDYAEGYQTGFADGFPFLVASEASLADLNQRLLPSAH----QVLMDRFRPNIVISGCEAWAEDTWEKILVGEVAMRAVKPCSRCKIPRIEQSTGKVDDKEPTETMKAFRSGEKLGL-PEALKNDVFFGQNLVHEHNGTVKVGDD 201          
BLAST of mRNA_Ecto-sp13_S_contig1182.1571.1 vs. uniprot
Match: A0A3M1XET8_9CHLR (MOSC domain-containing protein n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A3M1XET8_9CHLR)

HSP 1 Score: 174 bits (442), Expect = 1.440e-50
Identity = 95/210 (45.24%), Postives = 131/210 (62.38%), Query Frame = 1
Query:   46 PAAGGELVEVGIWKDMCQAIDQGDAAASWLQAFLGVDNLRLVRMKDGFVRPTDPGYGT--GFRAGFADGFPILLAAEESLEELNSRIAATGDGEQATVGMDRFRPNIVVRGWGPFAEDDWTKIRVGRIGMRTPKPCSRCQIPGINQSTLEVRKEPKQTLDTFRTGSHVARWNEKWSKDVFFGMNVLHESAGVLRVGDDVDVLRAASKASA 669
            P+  G+ V+V +W+D+C AIDQG+A A+WLQ FLG+   RLVR  D  VR  D  Y      + GFADG+P LL ++ SL++LN+R+A+        V M+RFRPNIVV G   FAED W ++R+G I     KPC+RC IP I+Q T  V +EP +TL T+RT          + + V FG N++  + G+LRVGD+V +   A+ ASA
Sbjct:   82 PSNTGQRVQVHVWRDVCDAIDQGEAVAAWLQDFLGMP-ARLVRTADDVVRRVDARYARRPSDQIGFADGYPFLLISQASLDDLNARLASP-------VPMNRFRPNIVVSGCDAFAEDHWRELRIGDIIFHVVKPCARCTIPTIDQDTAIVGREPLRTLSTYRT----------FGQKVLFGQNLVAANTGLLRVGDEVVITATATAASA 273          
BLAST of mRNA_Ecto-sp13_S_contig1182.1571.1 vs. uniprot
Match: A0A6J4VB52_9CHLR (Flavodoxin reductases (Ferredoxin-NADPH reductases) family 1 n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4VB52_9CHLR)

HSP 1 Score: 171 bits (433), Expect = 4.510e-49
Identity = 92/200 (46.00%), Postives = 120/200 (60.00%), Query Frame = 1
Query:   52 AGGELVEVGIWKDMCQAIDQGDAAASWLQAFLGVDNLRLVRMKDGFVRPTDPGYGTGFR--AGFADGFPILLAAEESLEELNSRIAATGDGEQATVGMDRFRPNIVVRG-WGPFAEDDWTKIRVGRIGMRTPKPCSRCQIPGINQSTLEVRKEPKQTLDTFRTGSHVARWNEKWSKDVFFGMNVLHESAGVLRVGDDVDV 642
            A G   EV +W+D C+ +DQGD  A W  AFLGV   RLVR+ D F R  DP Y T  R   GFADGFP+LL +EESL +LN+R+A         + M+RFRPN+VV G  GPFAED W+++R+G   +   K C+RC I   +Q T  V KEP  TL T+R G           + V FG N++HE  G +R+GD V++
Sbjct:  101 ASGPTREVIVWRDGCRVVDQGDEIARWFAAFLGVA-CRLVRLADDFERKVDPAYATSARDQVGFADGFPLLLISEESLADLNARLAEP-------LPMNRFRPNVVVAGAGGPFAEDGWSRVRIGGTILHVVKACARCAITTTDQRTAAVGKEPLTTLATYRRGE----------RGVLFGQNLIHEGPGTIRLGDRVEI 282          
BLAST of mRNA_Ecto-sp13_S_contig1182.1571.1 vs. uniprot
Match: A0A0F7K1Z1_9GAMM (MOSC domain-containing protein n=1 Tax=Sedimenticola thiotaurini TaxID=1543721 RepID=A0A0F7K1Z1_9GAMM)

HSP 1 Score: 165 bits (417), Expect = 6.540e-47
Identity = 88/197 (44.67%), Postives = 112/197 (56.85%), Query Frame = 1
Query:   58 GELVEVGIWKDMCQAIDQGDAAASWLQAFLGVDNLRLVRMKDGFVRPTDPGYGTGF-RAGFADGFPILLAAEESLEELNSRIAATGDGEQATVGMDRFRPNIVVRGWGPFAEDDWTKIRVGRIGMRTPKPCSRCQIPGINQSTLEVRKEPKQTLDTFRTGSHVARWNEKWSKDVFFGMNVLHESAGVLRVGDDVDVL 645
            GE   V +W D C A   GDA A+WL  FLGVD  RL  M +   R  DP Y T   R GFADGFP +L ++ SL++LN R+          + M RFRPN+VV G  P+AED W +IRVG I  R  KPCSRC IP I+  T E   EP +TL  +R          +    V+FG N+LH+ +G L++G  V+VL
Sbjct:   87 GETASVQVWGDHCLARSAGDAPANWLSRFLGVD-CRLFFMPESTERAVDPDYATAHDRVGFADGFPFMLISQASLDDLNGRL-------DTPLPMQRFRPNLVVTGCEPYAEDSWRRIRVGEITFRVAKPCSRCAIPAIDPETAEKGAEPLRTLSRYR----------REGNQVYFGQNLLHDGSGELKIGAPVEVL 265          
BLAST of mRNA_Ecto-sp13_S_contig1182.1571.1 vs. uniprot
Match: A0A7C1TDL4_9GAMM (MOSC domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C1TDL4_9GAMM)

HSP 1 Score: 163 bits (412), Expect = 3.290e-46
Identity = 89/192 (46.35%), Postives = 112/192 (58.33%), Query Frame = 1
Query:   73 VGIWKDMCQAIDQGDAAASWLQAFLGVDNLRLVRMKDGFVRPTDPGYGT-GFRAGFADGFPILLAAEESLEELNSRIAATGDGEQATVGMDRFRPNIVVRGWGPFAEDDWTKIRVGRIGMRTPKPCSRCQIPGINQSTLEVRKEPKQTLDTFRTGSHVARWNEKWSKDVFFGMNVLHESAGVLRVGDDVDVL 645
            V +W+D C A+D GD A +WL  FLG+   RLV   D  VR  DP Y   G R  F+DGFPILL ++ SL++LN R+A         V M RFRPN+VV G  PFAED+W +IR+G I  R  KPCSRC IP I+ +T E   EP +TL  FR             K +FFG NV+ ES G L  G  V+++
Sbjct:   88 VTVWEDRCTALDCGDEAGAWLSQFLGI-TCRLVFFPDDEVRQVDPAYAQPGDRTAFSDGFPILLISQASLDDLNRRLAKP-------VAMRRFRPNLVVSGCAPFAEDNWKQIRIGGILFRIVKPCSRCVIPNIDPATAEKSAEPTRTLSRFRLRE----------KKIFFGQNVIAESQGELECGMPVEII 261          
BLAST of mRNA_Ecto-sp13_S_contig1182.1571.1 vs. uniprot
Match: A0A558DFU9_9GAMM (MOSC domain-containing protein n=1 Tax=Sedimenticola thiotaurini TaxID=1543721 RepID=A0A558DFU9_9GAMM)

HSP 1 Score: 162 bits (410), Expect = 7.340e-46
Identity = 91/196 (46.43%), Postives = 113/196 (57.65%), Query Frame = 1
Query:   61 ELVEVGIWKDMCQAIDQGDAAASWLQAFLGVDNLRLVRMKDGFVRPTDPGYG-TGFRAGFADGFPILLAAEESLEELNSRIAATGDGEQATVGMDRFRPNIVVRGWGPFAEDDWTKIRVGRIGMRTPKPCSRCQIPGINQSTLEVRKEPKQTLDTFRTGSHVARWNEKWSKDVFFGMNVLHESAGVLRVGDDVDVL 645
            E   V +W D C A   G AAA WL  FLG+ N RL  M +   RP DPGY  T  + GFADGFP LL +E SL +LN R+       +  + M RFRPN+VV G  P+AED W +IR+G I  R  KPCSRC IP IN  T E   EP +TL+++R          +    V+FG N+LH+  G LRVG  V+VL
Sbjct:   88 EQQTVQVWGDHCLAESAGVAAAEWLSHFLGL-NCRLFFMPESTRRPVDPGYAETDDQVGFADGFPFLLISEASLADLNGRL-------EQPLPMLRFRPNLVVSGCEPYAEDSWRRIRIGDITFRVAKPCSRCVIPTINPETAEKSVEPLRTLNSYR----------REGNKVYFGQNLLHDGVGELRVGTTVEVL 265          
BLAST of mRNA_Ecto-sp13_S_contig1182.1571.1 vs. uniprot
Match: A0A7C1U443_9GAMM (MOSC domain-containing protein n=1 Tax=Thiotrichales bacterium TaxID=2026796 RepID=A0A7C1U443_9GAMM)

HSP 1 Score: 161 bits (408), Expect = 1.460e-45
Identity = 89/202 (44.06%), Postives = 119/202 (58.91%), Query Frame = 1
Query:   49 AAGGELVEVGIWKDMCQAIDQGDAAASWLQAFLGVDNLRLVRMKDGFVRPTDPGYGT-GFRAGFADGFPILLAAEESLEELNSRIAATGDGEQATVGMDRFRPNIVVRGWGPFAEDDWTKIRVGRIGMRTPKPCSRCQIPGINQSTLEV--RKEPKQTLDTFRTGSHVARWNEKWSKDVFFGMNVLHESAGVLRVGDDVDVL 645
            AAGGE +EV IW+D C A+  G+ A +W   +LG+  +RLVRM D  VRP DP YG  G    FADG+P+LL  + SL++LN+R+       +  V M RFRPN+VV G  P+AED+W +IRVG +     KPCSRC    ++  T E   R+EP  TL  +R+              VF G N++  S GV+ VGD V+VL
Sbjct:   80 AAGGERLEVDIWRDRCPAVAVGEEADAWFSRYLGMP-VRLVRMTDDIVRPVDPAYGRPGDEVSFADGYPVLLIGQASLDDLNTRL-------KKPVDMRRFRPNLVVTGAEPYAEDNWRRIRVGEVEFEGVKPCSRCIFTTVDPDTGEPDPRREPLATLGRYRSREG----------GVFLGRNLVPRSGGVIHVGDPVEVL 263          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1182.1571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMR0_ECTSI1.180e-15795.59MOSC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835Z5C1_9STRA1.220e-6554.00MOSC domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2W2F0_9STRA2.320e-5947.96Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2UVY0_9STRA8.550e-5751.08Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A3M1XET8_9CHLR1.440e-5045.24MOSC domain-containing protein n=2 Tax=Chloroflexi... [more]
A0A6J4VB52_9CHLR4.510e-4946.00Flavodoxin reductases (Ferredoxin-NADPH reductases... [more]
A0A0F7K1Z1_9GAMM6.540e-4744.67MOSC domain-containing protein n=1 Tax=Sedimentico... [more]
A0A7C1TDL4_9GAMM3.290e-4646.35MOSC domain-containing protein n=1 Tax=Gammaproteo... [more]
A0A558DFU9_9GAMM7.340e-4646.43MOSC domain-containing protein n=1 Tax=Sedimentico... [more]
A0A7C1U443_9GAMM1.460e-4544.06MOSC domain-containing protein n=1 Tax=Thiotrichal... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1182contigEcto-sp13_S_contig1182:15864..18574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score446.8
Seed ortholog evalue6e-123
Seed eggNOG ortholog2880.D8LMR0
Model size684
KEGG koko:K07140,ko:K18467
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.MOSC domain-containing protein
EggNOG OGsCOG3217@1,KOG2362@2759
Cds size684
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462624.2305655-CDS-Ecto-sp13_S_contig1182:15863..160201681462624.2305655-CDS-Ecto-sp13_S_contig1182:15863..16020Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1182 15864..16020 -
1681462624.2421417-CDS-Ecto-sp13_S_contig1182:16555..167261681462624.2421417-CDS-Ecto-sp13_S_contig1182:16555..16726Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1182 16556..16726 -
1681462624.2515416-CDS-Ecto-sp13_S_contig1182:17443..176461681462624.2515416-CDS-Ecto-sp13_S_contig1182:17443..17646Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1182 17444..17646 -
1681462624.2664013-CDS-Ecto-sp13_S_contig1182:18421..185741681462624.2664013-CDS-Ecto-sp13_S_contig1182:18421..18574Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1182 18422..18574 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1182.1571.1prot_Ecto-sp13_S_contig1182.1571.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1182 15864..18574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1182.1571.1

>prot_Ecto-sp13_S_contig1182.1571.1 ID=prot_Ecto-sp13_S_contig1182.1571.1|Name=mRNA_Ecto-sp13_S_contig1182.1571.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=228bp
ASLEVPVVRTVGAGGPAAGGELVEVGIWKDMCQAIDQGDAAASWLQAFLG
VDNLRLVRMKDGFVRPTDPGYGTGFRAGFADGFPILLAAEESLEELNSRI
AATGDGEQATVGMDRFRPNIVVRGWGPFAEDDWTKIRVGRIGMRTPKPCS
RCQIPGINQSTLEVRKEPKQTLDTFRTGSHVARWNEKWSKDVFFGMNVLH
ESAGVLRVGDDVDVLRAASKASAKKTQ*
back to top

mRNA from alignment at Ecto-sp13_S_contig1182:15864..18574-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1182.1571.1 ID=mRNA_Ecto-sp13_S_contig1182.1571.1|Name=mRNA_Ecto-sp13_S_contig1182.1571.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2711bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1182:15864..18574- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTCTCTGGAGGTGCCGGTGGTGCGCACGGTCGGTGCCGGCGGCCCAGC GGCAGGCGGAGAGCTTGTCGAAGTCGGGATTTGGAAGGACATGTGCCAAG CGATCGACCAGGGGGACGCCGCGGCTTCGTGGTTGCAAGCTTTCTTGGGA GTGGTGAGTCGAGTGAGGTAAAACAGGGTGTTCTGGGTGGGGTTATGTGT GTGTGGTAACGGCAATGAAACGTTTTGGCTTCGACTAGCAGCCCTCATTT ATTGTTGAAGGGATGCGAAGGTTTGGGGCGAAACGAACCCTGGGAGATAC TGCTGTTGTAGGGGGTTGAACCTTTTGGGGATAGGCACAGTAGTTCGGAT CAAGGTTTGGGTCAGGGGCTGGGCATCTGCCGGAGTAGTTCAATCGCGCG GATGCTGCACTTGCGCACTCGTGGGGACAGATCTGAAAGCGACATGGTTG TTGTGTACATACCCCGTCTGAGGTGCTGCGTTAACTGCAGGGGTAATTGC TAAAGCTTGGCGTCGGTGTTTCTCTAGCACTCTTCATCGAAGGTGGTGTC GGATGCTTTCGCCTAACAGCAATTTAGACACACGCCACCCCCTTTCTGCC CGCCCTGGTTCATCAGTCTCTCCCCAAGCTCCTGAATCACATGCGGCTGC GCGAAGAAGGAGGGCACACAGACAGATAGATAGATCCCACGTTCACCGAC CACGGTGTGGTTGTCGTATCAGACCAACTCGTACATAGTACGTGGTCATC GCTGCGCGTGCATATGCGTGTGTCATCCATCTATCCTCTTTCTGTCGCGG TCTGCTTCCTTCAGTTCCAAATCACTCAATCTTCCCCTCCTCCATATTTT TTGCTTCTTTTTTACTATGAACGCCGCTCGCTCCACGTGCCGAACACACG CTCATTCATGCGGCCGGAGTGTGTATAGGATAACTTGAGGCTGGTTCGAA TGAAGGACGGCTTCGTGCGGCCGACCGATCCCGGCTACGGCACGGGCTTC CGCGCCGGCTTCGCCGACGGCTTCCCCATTCTCCTGGCGGCGGAAGAATC CCTGGAAGAGCTCAACTCGAGAATAGCTGCGACGGGGGACGGCGAGCAGG CCACCGTCGGTATGGACCGCTTTCGACCGAAGTAAGTGCCCACGAGAAAT GTGTGTCCAGAATTTGAGAAGGCAGATCCGTGAGGGTACAGTTGGCGCCC TTTTCTGTGGCATGGTGTTCGGTCGAGCGCCAAGTGGGGGCCGGGCGCTT ACACGGCCAGTTGACGTGAGCCTACGCATACTTCCCCCCAAAGGTTGTTT CTGCTCTAGCTGTTGCCGCTGCGGCGAAGAGGATTTCGTTTTCGTTTTTT TTACGCGTTTTTCGTGTGAGTGTGCGTGCTTTGTGGCTTGGTATCATAGC AAGTGCTTTTCGCAGTTCGCCCGCTCTGGTGTTGGTGTTTGAAAGCCATT GTGCGCCGGTAGACTTTTGGCATCCATCGTGCATTCCTCCCGGACATCGT GTTTCACGATGTACTGTAGTTGGCGTGGTTCTTCCGCCACGACCGCGGTT CTAGAGACACCATTACACTGTTGTTTCGCTTCTATAATAGGAACATCATC ACACTGCTGTGGTTGCGCGTCTAGGAACACCAGTTCGCCACTGCGGTTAC GGATTCGAACGTTTTTTTTCGTCGTCGACTCTCTCGCGGGGGCCACCAAA GTCTCGTTTCTCCCTCCCGGTGTCCCTCGGCGTACATTGCCATTATTATC TCCTCTGTTTCTTATTTTTTCCGCGCGCGCGAACGCCCGCCCTTCGCTGT CTGTCGGTGTGCCCTGTGTCGGGGGCACTTGCTTGCCACACTTCACAGCA TCGTGGTGCGAGGGTGGGGCCCCTTCGCAGAGGACGACTGGACCAAGATC AGGGTAGGCAGGATCGGCATGCGCACCCCGAAGCCGTGCAGCCGGTGCCA GATACCCGGCATCAACCAGAGCACCCTCGAGGTTCGAAAAGAGCCCAAGC AGACTCTGGACACTTTCCGGTGAGAGTTTTGTTTTGTGCAAGTCGTCGTT GTACCTCTATCTCGTTTCTAGACCGGCTGGTCTTCCAGCGTGTGCGATCT TCGACCATGTTTTTGGAAACCTTCGGGGGCTGGGGAGACCCCTTTCTCTT CCGTCTGAGGGCTGCACTTTTCGCATCTTCGTTGGCCGAACAGCTCTCCG GTCGCGCTAGTGCTGCCGTCTTGCCACGACAGCGGTCAGTACTAAGGACT TATCCACCACCTTCGGGTATCTGTAGCGTGAGAGTGTGCTGCAATAGCCC ACAATAATGCACAGCCCTTGTTGCGTACAGTTTACCGCTCATCCCCGCGG GTCCCGTATGGCTGTTCCTCCCGACAAAATGATATTATTCCTTCCATCGT CTTTTTCAGGGTCTGCAGGCAATACGATCCTGCCCTTTCTGTCTCCGCCC TGCCTCGTTTCTCCGCATTTTTTCCCCTGCGTGCCCCACATCCGTGTGTA CCCAAAAACTGGTGCATTCGCTTTCTTTTTTCTCATGCATGGCAATAAAA AAAGAACCGGGTCTCACGTTGCCCGATGGAACGAGAAGTGGTCGAAGGAC GTTTTCTTCGGCATGAACGTGCTGCACGAGTCCGCGGGCGTGCTGCGCGT GGGCGACGACGTCGACGTCTTGAGAGCAGCGTCCAAGGCGAGCGCCAAGA AGACGCAATAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1182:15864..18574-

>mRNA_Ecto-sp13_S_contig1182.1571.1 ID=mRNA_Ecto-sp13_S_contig1182.1571.1|Name=mRNA_Ecto-sp13_S_contig1182.1571.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=684bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1182:15864..18574- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTCTCTGGAGGTGCCGGTGGTGCGCACGGTCGGTGCCGGCGGCCCAGC
GGCAGGCGGAGAGCTTGTCGAAGTCGGGATTTGGAAGGACATGTGCCAAG
CGATCGACCAGGGGGACGCCGCGGCTTCGTGGTTGCAAGCTTTCTTGGGA
GTGGATAACTTGAGGCTGGTTCGAATGAAGGACGGCTTCGTGCGGCCGAC
CGATCCCGGCTACGGCACGGGCTTCCGCGCCGGCTTCGCCGACGGCTTCC
CCATTCTCCTGGCGGCGGAAGAATCCCTGGAAGAGCTCAACTCGAGAATA
GCTGCGACGGGGGACGGCGAGCAGGCCACCGTCGGTATGGACCGCTTTCG
ACCGAACATCGTGGTGCGAGGGTGGGGCCCCTTCGCAGAGGACGACTGGA
CCAAGATCAGGGTAGGCAGGATCGGCATGCGCACCCCGAAGCCGTGCAGC
CGGTGCCAGATACCCGGCATCAACCAGAGCACCCTCGAGGTTCGAAAAGA
GCCCAAGCAGACTCTGGACACTTTCCGAACCGGGTCTCACGTTGCCCGAT
GGAACGAGAAGTGGTCGAAGGACGTTTTCTTCGGCATGAACGTGCTGCAC
GAGTCCGCGGGCGTGCTGCGCGTGGGCGACGACGTCGACGTCTTGAGAGC
AGCGTCCAAGGCGAGCGCCAAGAAGACGCAATAA
back to top