mRNA_Ecto-sp13_S_contig1182.1569.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1182.1569.1
Unique NamemRNA_Ecto-sp13_S_contig1182.1569.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1182.1569.1 vs. uniprot
Match: D8LMR3_ECTSI (Oxidoreductase, short chain dehydrogenase/reductase family n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMR3_ECTSI)

HSP 1 Score: 559 bits (1441), Expect = 7.330e-197
Identity = 300/315 (95.24%), Postives = 305/315 (96.83%), Query Frame = 1
Query:    1 MPSSKGRMLSFVLVCPTLCSAFLSASRSLSSLDVGRTTKMSAAVTGRLADKVYLVTGSTDGIGKHTASRLVEEGATVLVHGRREAVVREAVEYVGGGKGKVEGIVADLSSLRGANHLCDEVLRRTDRLDCLLNNAGVFEADFRHSDDGLEYTFAVNVLAPYVITGRLLDLLAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHASYSLSKLLDIMFNAELARRAPKGVTCNSLDPGTVNTKMLRAGWGLGGIPVKSANDQFYLATSDDVSDSSGEYYVSXXXXXXXXXXXXXEACRRLWGVLEELSGFSYA 945
            MPSSKGRMLSFVLVCPTLCSAFL   RSLSSLDVGRTTKMSAAVTGRLADKVYLVTGSTDGIGKHTASRL EEGATVLVHGRRE+ VREAVE+VGGGKGKVEGIVADLSSLRGANHLCDEVLR TDRLDCLLNNAGVFEADFRHSDDGLEYTFAVNVLAPYVITGRLLDLLAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHASYSLSKLLDIMFNAELARRAPKG+TCNSLDPGTVNTKMLRAGWG+GGIPVKSANDQFYLATSDDV+DSSGEY   XXXXXXXXXXXXXEACRRLW VLEELSGFSYA
Sbjct:    1 MPSSKGRMLSFVLVCPTLCSAFLCTRRSLSSLDVGRTTKMSAAVTGRLADKVYLVTGSTDGIGKHTASRLAEEGATVLVHGRRESAVREAVEHVGGGKGKVEGIVADLSSLRGANHLCDEVLRLTDRLDCLLNNAGVFEADFRHSDDGLEYTFAVNVLAPYVITGRLLDLLAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHASYSLSKLLDIMFNAELARRAPKGITCNSLDPGTVNTKMLRAGWGMGGIPVKSANDQFYLATSDDVTDSSGEYXXXXXXXXXXXXXXXXEACRRLWRVLEELSGFSYA 315          
BLAST of mRNA_Ecto-sp13_S_contig1182.1569.1 vs. uniprot
Match: A0A6V2U0S1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2U0S1_HETAK)

HSP 1 Score: 261 bits (666), Expect = 1.490e-79
Identity = 136/269 (50.56%), Postives = 179/269 (66.54%), Query Frame = 1
Query:  148 DKVYLVTGSTDGIGKHTASRLVEEGATVLVHGRREAVVREAVEYVGG--GKGKVEGIVADLSSLRGANHLCDEVLRRTDRLDCLLNNAGVFEADFRHSDDGLEYTFAVNVLAPYVITGRLLDLLAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHASYSLSKLLDIMFNAELARRAPKGV--TCNSLDPGTVNTKMLRAGWGLGGIPVKSANDQFYLATSDDVSDSSGEYYVSXXXXXXXXXXXXXEACRRLWGVLEELSGFSY 942
            +K+++VTGSTDGIG+HT+ +L E GA V+VHGR  A   E V+++    G  K++  VADLS     + L D++  +   +DCL+NNAGVFE  F+ + DG E TFAVNV AP+V+T RLL +L K PG  R++ V+S+S    +DF+NLQFEKGGY +H+SYSLSKL D M   E+A R   G   T N+LDPGTVNTKML AGWG+ GIPV  AN++F+LATS DV   +G+Y+ S             EA RRLW  LE  +G +Y
Sbjct:   60 EKIFVVTGSTDGIGRHTSKKLAETGARVIVHGRNTARCEETVQWIKDITGNEKIDYFVADLSETSNVHTLADQICEKYSHIDCLINNAGVFEEQFQTTPDGFEMTFAVNVAAPFVLTKRLLPMLQKRPGS-RLIIVSSISQGSRIDFENLQFEKGGYDEHSSYSLSKLCDAMLAFEMAARFGSGAQPTVNTLDPGTVNTKMLLAGWGMCGIPVTRANNEFWLATSPDVEGVNGKYFTSCRESRASQVAYDPEARRRLWEYLERTTGVTY 327          
BLAST of mRNA_Ecto-sp13_S_contig1182.1569.1 vs. uniprot
Match: A0A7S2V5E2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5E2_9STRA)

HSP 1 Score: 254 bits (650), Expect = 8.710e-77
Identity = 148/301 (49.17%), Postives = 193/301 (64.12%), Query Frame = 1
Query:   76 SRSLSSLDVGRTTKMSAAVTGRLADKVYLVTGSTDGIGKHTASRLVEEGA----TVLVHGRREAVVREAVEYV-------GGGKGKVEGIVADLSSLRGANHLCDEVLRRTDRLDCLLNNAGVFEADFRHSDDGLEYTFAVNVLAPYVITGRLLDLLAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHASYSLSKLLDIMFNAELARR-APKGVTCNSLDPGTVNTKMLRAGWGLGGIPVKSANDQFYLATSDDVSDSSGEYYVSXXXXXXXXXXXXXEACRRLWGVLEELSGFSY 942
            S+ LSSL      KM ++  G    KVYLVTGSTDGIG+HT  RL    A    TV+VHGR  A    AV++V       GGG  +VE IVAD+S++RG   L ++   R  RLDCL+NNAGVFE  ++ ++D LE TFAVNV+APY++T  LLDL+    G  R++NV+S+S  Y ++FDNLQF+ GGYSDHA+YSLSKLL +M++ E A R     +T NSLDPGTVNTKML AGWG  GI V  A+++F+LATSD V   +G Y+V                  +L+ +LE ++G SY
Sbjct:   63 SKHLSSL------KMQSSANGGGGGKVYLVTGSTDGIGRHTCGRLAALAADGDSTVVVHGRDPARCALAVDWVREKSLSAGGGGCRVESIVADISTIRGVASLANQFKARFGRLDCLINNAGVFEQSYQLTEDNLEMTFAVNVMAPYLLTFLLLDLMLPHKGS-RIINVSSISQGYDVNFDNLQFQNGGYSDHAAYSLSKLLMVMYSLESAERIGSPDLTINSLDPGTVNTKMLYAGWGACGIDVSRADNEFWLATSDQVEGINGRYFVGKGDSSASRAAYDSTNRSKLFEILEGITGVSY 356          
BLAST of mRNA_Ecto-sp13_S_contig1182.1569.1 vs. uniprot
Match: A0A835YNH2_9STRA (Oxidoreductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH2_9STRA)

HSP 1 Score: 232 bits (591), Expect = 4.390e-69
Identity = 135/279 (48.39%), Postives = 178/279 (63.80%), Query Frame = 1
Query:  124 AAVTGRLADKVYLVTGSTDGIGKHTASRLVEEGATVLVHGRREAVVREAVEYVG--GGKGKVEGIVADLSSLRGANHLCDEVLRRTDRLDCLLNNAGVFEADFRHSDDGLEYTFAVNVLAPYVITGRLLDLLAKAPGGGRVVNVASLSASYSLDFDNLQFEKGG---YSDHASYSLSKLLDIMFNAELARR-APKGVTCNSLDPGTVNTKMLRAGWGLGGIPVKSANDQFYLATSDDVSDSSGEYYVSXXXXXXXXXXXXXEACRRLWGVLEELSGFSY 942
            AA T  LA K+ LVTGSTDGIG+HTA++L  +GATVLVHGR +  + +AVE V       +V GI+AD+S+L G   L   V + T  LD L++NAG+FE+  R ++DG E  FA NVLAP+V TG LL LL +A    RV+ V+S+S  Y+    + QFE+ G   +SDH SYSLSKL D M + E   R A   +T N+LDPGTVNTKML AGWG+ GI V  ANDQ+ LATS+++   SG+Y++S              A ++LW    ++SGF Y
Sbjct:    2 AAATRPLAGKIALVTGSTDGIGRHTATKLATDGATVLVHGRNQERLAKAVEGVKKQSSNDQVHGILADISTLAGMRTLSTAVHQHTSVLDILVSNAGIFESCRRTTEDGTELVFATNVLAPFVTTGLLLPLL-RASAAARVITVSSMSQGYAAGLVDPQFERDGGSAFSDHRSYSLSKLCDAMLSMEFHERFASPTLTFNTLDPGTVNTKMLDAGWGMCGIAVNRANDQYTLATSENLKGVSGKYFISARETRANPACYDPVARKQLWDYCAKVSGFDY 279          
BLAST of mRNA_Ecto-sp13_S_contig1182.1569.1 vs. uniprot
Match: A0A2P6TE58_CHLSO (Short chain dehydrogenase reductase family n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TE58_CHLSO)

HSP 1 Score: 222 bits (566), Expect = 1.980e-65
Identity = 133/276 (48.19%), Postives = 170/276 (61.59%), Query Frame = 1
Query:  142 LADKVYLVTGSTDGIGKHTASRLVEEGATVLVHGRREAVVREAV---EYVGGGKGKV--EGIVADLSSLRGANHLCDEVLRRTDRLDCLLNNAGVFEADFRHSDDGLEYTFAVNVLAPYVITGRLLDLLAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHASYSLSKLLDIMFNAELA---RRAPKGVTCNSLDPGTVNTKMLRAGWGLGGIPVKSANDQFYLATSDDVSDSSGEYYVSXXXXXXXXXXXXXEACRRLWGVLEELSGFSYA 945
            L  K + VTG+TDGIG HTA RL  +GATVLVHGR    V +AV   E  G G G     G VADL+SL     L +EV   +  +D L+NNAGVFE   R S+DG E T+AVNV AP+++T  LL+ + +     RVV V+S+SA+ S+D+ NLQ E+G +S H +YSLSKL + +F  ELA   R A   VTCN LDPGTVNTKML AGWG  GIPVK AN +   AT   ++ +SGEY+V                 +RLW +LEE +G  ++
Sbjct:    5 LLGKTFFVTGATDGIGAHTAQRLAAQGATVLVHGRNPGRVEQAVAAVERAGSGSGGAPPRGFVADLASLAQVRRLAEEVAASSPSVDVLINNAGVFEQQLRKSEDGFELTWAVNVAAPFLLTACLLEAVRE-----RVVVVSSISAASSIDWGNLQQERG-FSAHNAYSLSKLAEQLFTFELADRLRAAGSPVTCNCLDPGTVNTKMLSAGWGSIGIPVKEANYELKAATDPALAGTSGEYFVGGRIARPPSIARDKAEQQRLWRLLEEQTGAKWS 274          
BLAST of mRNA_Ecto-sp13_S_contig1182.1569.1 vs. uniprot
Match: A0A061S8W3_9CHLO (Short chain dehydrogenase reductase family n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S8W3_9CHLO)

HSP 1 Score: 221 bits (562), Expect = 7.280e-65
Identity = 133/268 (49.63%), Postives = 166/268 (61.94%), Query Frame = 1
Query:  151 KVYLVTGSTDGIGKHTASRLVEEGATVLVHGRREAVVREAV---EYVGGGKGKVEGIVADLSSLRGANHLCDEVLRRTDRLDCLLNNAGVFEADFRHSDDGLEYTFAVNVLAPYVITGRLLDLLAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHASYSLSKLLDIMFNAELARRAP-KGVTCNSLDPGTVNTKMLRAGWGLGGIPVKSANDQFYLATSDDVSDSSGEYYVSXXXXXXXXXXXXXEACRRLWGVLEELSGFSY 942
            KV+LVTGSTDGIG HTA  L   G +V+VHGR E  VR+AV   E V  G GKV     D SSL+    L D+V R    +D L+NNAGV++     S DG E T+AVNVLAP+V+T  L +++       RVVN AS+SA +S+D DNL  EKG +S H +YSLSKLLDI+   ELA R   K  T N+LDPGTVNTKML AGWG  GIPV+SA D+FY++TS D+   SGEY+V                   LW + E+ +G  +
Sbjct:   13 KVFLVTGSTDGIGLHTAKLLAAGGGSVIVHGRNELRVRDAVAEVERVARGNGKVASYTRDFSSLQEVKRLGDDVKRDFATIDVLVNNAGVYKEGKELSQDGFEMTYAVNVLAPFVLTSALHNIVTS-----RVVNTASISAGHSVDLDNLNQEKG-FSSHNAYSLSKLLDIILTFELAERLKEKPFTVNTLDPGTVNTKMLLAGWGPIGIPVESA-DEFYVSTSPDLEGVSGEYFVGKRRTRAPAAAYDRGLRETLWRLWEQQTGVRF 273          
BLAST of mRNA_Ecto-sp13_S_contig1182.1569.1 vs. uniprot
Match: A0A7S1HEF3_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HEF3_HEMAN)

HSP 1 Score: 221 bits (563), Expect = 1.850e-64
Identity = 135/310 (43.55%), Postives = 189/310 (60.97%), Query Frame = 1
Query:   46 PTLCSAFLSASRSLSS--LDVGRTTKMSAAVTGRLADKVYLVTGSTDGIGKHTASRLVEEGATVLVHGRREAVVREAVEYVGGGKGKVEG-----IVADLSSLRGANHLCDEVLRRTDRLDCLLNNAGVFEADFRHSDDGLEYTFAVNVLAPYVITGRLLDLLAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHASYSLSKLLDIMFNAELARR---APKGVTCNSLDPGTVNTKMLRAGWGLGGIPVKSANDQFYLATSDDVSDSSGEYYVSXXXXXXXXXXXXXEACRRLWGVLEELSGFSYA 945
            P+L  A  +AS SL+S       + +MS    G  + K+ LVTGSTDGIG+HTA++L ++G  VL+HGR +  +   V+ +   K K  G      +AD +SL     L  E+  +  R+D L+NNAGVF    + + DG E TF VNVLAP+++T  +LDL+ K+  G +++ V+S+S SY+LDFDNLQ +KG +SDH+SYSLSKL + M   ELA R   A  GVT N+LDPGTVNTKML AGWG+ GI +  AN Q  LAT   +   +G+Y+V              E  +RLW ++ +L+G  Y+
Sbjct:   12 PSLVLALTAASLSLASGFASPPLSLRMSG---GDGSKKIALVTGSTDGIGQHTATKLAQDGFKVLIHGRSQKRIDATVQRI---KDKAPGCELDTFLADFASLEDVRKLSKELHAKCPRIDLLINNAGVFSQSMQKTVDGNEMTFQVNVLAPFLLTSLVLDLVKKSEKG-KIIIVSSISQSYALDFDNLQMQKG-FSDHSSYSLSKLCNAMHAIELAERLKGALPGVTVNTLDPGTVNTKMLEAGWGMCGIDLSRANYQHTLATDPSLDGETGQYFVGGRNTKASPPCYDTEQRQRLWKIMTDLTGADYS 313          
BLAST of mRNA_Ecto-sp13_S_contig1182.1569.1 vs. uniprot
Match: A0A1L7H7G4_SACKO (Retinol dehydrogenase 14-like protein 094 n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=A0A1L7H7G4_SACKO)

HSP 1 Score: 219 bits (558), Expect = 2.760e-64
Identity = 122/270 (45.19%), Postives = 169/270 (62.59%), Query Frame = 1
Query:  142 LADKVYLVTGSTDGIGKHTASRLVEEGATVLVHGRREAVVREAVEYV--GGGKGKVEGIVADLSSLRGANHLCDEVLRRTDRLDCLLNNAGVFEADFRHSDDGLEYTFAVNVLAPYVITGRLLDLLAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHASYSLSKLLDIMFNAELARRA-PKGVTCNSLDPGTVNTKMLRAGWGLGGIPVKSANDQFYLATSDDVSDSSGEYYVSXXXXXXXXXXXXXEACRRLWGVLEELSGFSY 942
            L+ +VYL+TGSTDGIGKHTA RL + G TVLVHGR  A   + VE +    G   +E   AD SSL     +  EV  R  R+D L+NNAGV+E     S +G E T AVNVLAP+++T  LLDL+ K     R++ V+S++ +Y++DF NLQFE+  YS  A+Y LSKL DI+F+ EL+ R  P G+  N  DPGTVNT ML   +G  GIP++ A+++FYLAT    +  +G+Y+V              +  RRLW ++E+++G +Y
Sbjct:    3 LSGRVYLITGSTDGIGKHTALRLAQAGGTVLVHGRNRAKGEKVVEELKTATGNPNIELFTADFSSLDHIRQMSREVHERHSRIDVLINNAGVWENQRILSQEGYEMTLAVNVLAPFLLTSLLLDLIPKGRVDSRILIVSSMTQAYNIDFSNLQFERD-YSGFAAYGLSKLCDIVFSYELSDRLRPLGIIVNCCDPGTVNTNMLMKSYGPIGIPIEQADNEFYLATDPKFTGVTGKYFVQLQDTSSASISYDIKTRRRLWQIMEQMTGATY 271          
BLAST of mRNA_Ecto-sp13_S_contig1182.1569.1 vs. uniprot
Match: A0A5J4XR04_9CHLO (Short chain dehydrogenase reductase family n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XR04_9CHLO)

HSP 1 Score: 217 bits (552), Expect = 1.940e-63
Identity = 122/270 (45.19%), Postives = 168/270 (62.22%), Query Frame = 1
Query:  136 GRLADKVYLVTGSTDGIGKHTASRLVEEGATVLVHGRREAVV---REAVEYVGGGKGKVEGIVADLSSLRGANHLCDEVLRRTDRLDCLLNNAGVFEADFRHSDDGLEYTFAVNVLAPYVITGRLLDLLAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHASYSLSKLLDIMFNAELARRA-PKGVTCNSLDPGTVNTKMLRAGWGLGGIPVKSANDQFYLATSDDVSDSSGEYYVSXXXXXXXXXXXXXEACRRLWGVLEELSG 933
            G ++ K YLVTGSTDGIG+HTAS+LV  GA VL+HGR +  V   +  ++ +  G  K+     +L+S        + +    + +D L+NNAGVFE     S+DG E T+A+NVLAP+++T  L D++       R+VNV+S+SA  S+DFDNLQ EKG +S H SYSLSKL  +MF  +LA    PKGVT N LDPGTVNTKML AGWG  GI VK AN ++ LAT   ++  +G+YYV+             +  +RLW ++ + +G
Sbjct:    4 GEVSGKTYLVTGSTDGIGRHTASKLVAAGANVLLHGRTQEKVTATKRDLDSIAKGN-KISSYTYNLASFSQIRKFAEAIRANHNNIDVLINNAGVFETQRSLSEDGYEMTWAINVLAPFLLTSLLKDVVTD-----RIVNVSSISAGSSIDFDNLQQEKG-FSSHNSYSLSKLASMMFTCDLAEHMKPKGVTVNCLDPGTVNTKMLIAGWGACGIDVKDANYEYKLATDPSLAKETGKYYVNGRESRLPAVAKDQKFRKRLWQIMTDQTG 266          
BLAST of mRNA_Ecto-sp13_S_contig1182.1569.1 vs. uniprot
Match: A0A7S0QHA5_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QHA5_9CRYP)

HSP 1 Score: 218 bits (554), Expect = 8.180e-63
Identity = 129/268 (48.13%), Postives = 161/268 (60.07%), Query Frame = 1
Query:  142 LADKVYLVTGSTDGIGKHTASRLVEEGATVLVHGRREAVVREAVEYV--GGGKGKVEGIVADLSSLRGANHLCDEVLRRTDRLDCLLNNAGVFEADFRHSDDGLEYTFAVNVLAPYVITGRLLDLLAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHASYSLSKLLDIMFNAELAR---RAPKGVTCNSLDPGTVNTKMLRAGWGLGGIPVKSANDQFYLATSDDVSDSSGEYYVSXXXXXXXXXXXXXEACRRLWGVLEELS 930
            L  K  LVTG+TDGIG HTA++L   G  VL+HGR    ++EA+  +     K  VE   AD SSLR  +    EVL +   LD L+NNAGVF    R ++DG E TF VNVLAP+++T  LL ++AKA  G RV+ V+S+S S  +D+DNLQ EKG +S H SYSLSKL + M   ELAR   R    V+ N+LDPGTVNTKML AGWG  G+ V  AND+F LAT       SG+Y+V               AC  LW  LE L+
Sbjct:   63 LGQKTALVTGATDGIGLHTATKLANAGYFVLIHGRDPVRIQEALRKIRLSNPKAGVESFQADFSSLRDVSRFASEVLEQYQCLDLLINNAGVFSQQMRTTEDGNEMTFQVNVLAPFLLTKALLPIVAKAQAG-RVIIVSSISQSSRIDWDNLQMEKG-FSSHESYSLSKLCNAMHALELARATARTAPHVSVNTLDPGTVNTKMLLAGWGYCGMEVADANDEFLLATDPRFEGVSGKYFVGGRERQAAAPCYDAAACAELWRRLEALT 328          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1182.1569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMR3_ECTSI7.330e-19795.24Oxidoreductase, short chain dehydrogenase/reductas... [more]
A0A6V2U0S1_HETAK1.490e-7950.56Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V5E2_9STRA8.710e-7749.17Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YNH2_9STRA4.390e-6948.39Oxidoreductase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A2P6TE58_CHLSO1.980e-6548.19Short chain dehydrogenase reductase family n=1 Tax... [more]
A0A061S8W3_9CHLO7.280e-6549.63Short chain dehydrogenase reductase family n=2 Tax... [more]
A0A7S1HEF3_HEMAN1.850e-6443.55Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A1L7H7G4_SACKO2.760e-6445.19Retinol dehydrogenase 14-like protein 094 n=1 Tax=... [more]
A0A5J4XR04_9CHLO1.940e-6345.19Short chain dehydrogenase reductase family n=1 Tax... [more]
A0A7S0QHA5_9CRYP8.180e-6348.13Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1182contigEcto-sp13_S_contig1182:1115..5595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score565.1
Seed ortholog evalue2.1e-158
Seed eggNOG ortholog2880.D8LMR3
Model size1548
Hectar predicted targeting categorychloroplast
GOsGO:0006950,GO:0006970,GO:0008150,GO:0009628,GO:0009987,GO:0033554,GO:0050896,GO:0051716,GO:0071214,GO:0071470,GO:0104004
Exons7
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG1208@2759
Ec32 ortholog descriptionShort-chain dehydrogenase/reductase SDR
Ec32 orthologEc-02_003350.1
Cds size948
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1182.1569.1prot_Ecto-sp13_S_contig1182.1569.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1182 1115..4995 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462624.0314283-CDS-Ecto-sp13_S_contig1182:1114..12511681462624.0314283-CDS-Ecto-sp13_S_contig1182:1114..1251Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1182 1115..1251 +
1681462624.042547-CDS-Ecto-sp13_S_contig1182:1545..15991681462624.042547-CDS-Ecto-sp13_S_contig1182:1545..1599Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1182 1546..1599 +
1681462624.0521452-CDS-Ecto-sp13_S_contig1182:2227..24421681462624.0521452-CDS-Ecto-sp13_S_contig1182:2227..2442Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1182 2228..2442 +
1681462624.061271-CDS-Ecto-sp13_S_contig1182:2757..28141681462624.061271-CDS-Ecto-sp13_S_contig1182:2757..2814Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1182 2758..2814 +
1681462624.0705512-CDS-Ecto-sp13_S_contig1182:3146..32771681462624.0705512-CDS-Ecto-sp13_S_contig1182:3146..3277Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1182 3147..3277 +
1681462624.0814784-CDS-Ecto-sp13_S_contig1182:4245..44301681462624.0814784-CDS-Ecto-sp13_S_contig1182:4245..4430Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1182 4246..4430 +
1681462624.0916123-CDS-Ecto-sp13_S_contig1182:4826..49951681462624.0916123-CDS-Ecto-sp13_S_contig1182:4826..4995Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1182 4827..4995 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462624.10055-UTR-Ecto-sp13_S_contig1182:4995..55951681462624.10055-UTR-Ecto-sp13_S_contig1182:4995..5595Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1182 4996..5595 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1182.1569.1

>prot_Ecto-sp13_S_contig1182.1569.1 ID=prot_Ecto-sp13_S_contig1182.1569.1|Name=mRNA_Ecto-sp13_S_contig1182.1569.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=316bp
MPSSKGRMLSFVLVCPTLCSAFLSASRSLSSLDVGRTTKMSAAVTGRLAD
KVYLVTGSTDGIGKHTASRLVEEGATVLVHGRREAVVREAVEYVGGGKGK
VEGIVADLSSLRGANHLCDEVLRRTDRLDCLLNNAGVFEADFRHSDDGLE
YTFAVNVLAPYVITGRLLDLLAKAPGGGRVVNVASLSASYSLDFDNLQFE
KGGYSDHASYSLSKLLDIMFNAELARRAPKGVTCNSLDPGTVNTKMLRAG
WGLGGIPVKSANDQFYLATSDDVSDSSGEYYVSRRVTTPPPPAEDEEACR
RLWGVLEELSGFSYA*
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mRNA from alignment at Ecto-sp13_S_contig1182:1115..5595+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1182.1569.1 ID=mRNA_Ecto-sp13_S_contig1182.1569.1|Name=mRNA_Ecto-sp13_S_contig1182.1569.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4481bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1182:1115..5595+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCATCATCGAAGGGCCGCATGCTGTCTTTCGTGTTGGTGTGTCCAAC CTTGTGCAGCGCGTTCTTAAGTGCGAGTAGATCGTTGTCATCGCTCGATG TCGGACGAACAACAAAAATGTCCGCCGCTGTGACTGGGTAAGAACAACAA TGACTGCCGAGTTGGGTCGTCCGTGCATGCTACCGTTTACTCGTGGGATA GTATCAAGGAGCGAGAGGATGGGGTGGGCGTGAAGGTAGTGCTGAAGGGG TGTTAGTAGCAGATGGGAAGGCGCACCAATCGTAGCGAGCCACAGGGCTA CCACGAGAATGATGAAGTGTGAAACATGATAACAGCGATCTCCCCCATGT GCAAAGAAGTGGCACATGATGACGGCGTCCCTCTGTCCTTGTCTGGTTCG GCGGATATGTATCCGTTTCCCCCTAACGCAGGAGACTGGCCGACAAGGTT TATCTTGTGACGGGTTCGACTGATGGCATCGGGAAGTGAGTGATTGTGCA AGAGCAGGTTGCGGTCCCACATGAACGATGTTTCCATTCTGACTTTCCCG AACGGAGGCTCTACAAAAGCTCTACGAAGGATGATGCCGCATGATTCACA CCATCGGACCCTTGGGCAGCAGCAGTGTAGCTTCCGATGTTATTGCACAT ATAAAGATCCATGAAATGGACGATGGAAAAGCAAGCGCGTTGCGGTTGTG TGCACGGCTTGCGAGCTTCGCTTTGCGCCTAGCCCCACGGATACCAACTA CTGTCCGATGGGAAAAACCAACCGATTTGTCTCTGGAGACCCCTGATGAT GCGCGCGGTTGCTCCCCGATAACAGCACCAGCTCCAAGGTACAGCAGTAC TATTAGCGCCCGCTCGTAAGAACTTGATAGTCGAGAAATTTATCCCCTAT ACTAAACCCTTTATAAAAATAGTAACTAACCTTCTAGGGACGGAGAACCC TACATTGCTTCGGCCAAACCTACAAGTGCGGGTGTTTACCACAACTGTCA GTGCTGTTGTGGTCGGGACCACAGCAGTACTGTTATGGTAGGGCAGTAGC AGTATATACATCGTGCCAACTCGGTCTCTTGCTGCGTGCTGCCCGGGTCA CGCAAAATCGCAGGCATACGGCCTCGCGCCTCGTCGAGGAAGGCGCGACG GTGCTGGTCCACGGCAGGCGAGAAGCCGTCGTAAGAGAGGCCGTCGAGTA CGTCGGAGGAGGAAAGGGGAAGGTGGAGGGGATCGTGGCCGACTTGAGCT CGCTGCGAGGGGCGAACCACTTGTGCGATGAGGTTCTACGTCGGACCGAC AGGCTAGACTGCCTCCTCAACAACGCAGGTAGGAGGAGGTGTACTCTTCC AGTTATACAGCTTGGAAGGTCGCACTTGTCCACTGGAGCGAACCTGGTAG GTAACATGTAACTATATACATGTGAAAGTGCAGCAGGACGGGTGTCTTAC ATGTGGCGATTTCGAGCTTGCCGATGGAACACCCACCTCCAATTACTATT GATTCACAAGGCTCCGTGTTGGTTTTGGGGCGTCGTACTCATCCCCTTTC ACTGAACGGAACTACACTCTACATGTTGCTTCCCCAACCTTTTTCGCCTT ATTGCGTTGTATTAATCGTTCGCCAACTCTCTCGCTCGGGCAGGCGTTTT CGAGGCTGACTTTCGGCACAGCGACGACGGCCTGGAGTACACCTTTGCAG GTAAAGGATTGCGTACCCTGGGGCAAGTGTGTGTCCATGGCAAGACTTAA CGCGCCGATGTACCGAGCTAGTGCTACCATTAGCGCATATGGCCCTTGCG TTTATTCAATCCTGTGCGAACAATTTTTTTAATTTCCGATCGAGAACCCT CCCCGAACATCCTTGCCCTCGGCTACGATAGTCCTATCTTCCTGGCTATC TGCACACCTCTTCCCGCCCCACTACAGCGGAAGCTCTCTGTGACTTCTGG TGTTAACCCACCGTGTAGATTTGAAGGTCCCACTCTCCTATTGTTTATTG TCAACATCGTCCCCTCCCCCCTCGTTGACCAGTGAACGTGCTCGCACCGT ACGTCATCACCGGCCGTCTGCTGGACTTACTCGCCAAGGCACCCGGTGGC GGTCGCGTAGTGAACGTGGCGAGCCTGTCCGCGTCCTACTCGCTGGACTT CGACAATCTTCAGGTGGGGAGACCGATCGCATTCCGGGCAGCTCACGTGG CTTGTTGAGCAAAACCTGGGGGGAATGGTTGATGGCGGCATCTTGGAGAT CGAAGAGATTGGGTGTTTCAGACTCGACCCGTGGGGGGGGCGGGTGTAAG CGCATAGCATAAGGGTATATACGGAGATCCACAAGGGAACAATCTCGCCA ACATCCGTCGAGGACGATGCCCTCCTTTAACACACGTTTGGCTTTGTTTA TAATTAGCAGATGTTCACGCGGTTGGCTTGTTCCGTTCGATCCCGTCACT TCGCTTGAGCCCCGTTTGCCGTCTCTTTCGAACCCGAGCCAACGTGCACG ACAACGCCGGGACCGGAGATGTGGGCCACTCGATGTAATGTGCTGCGTAG AAGATCTTAGCCCCATCATTCGTCTTACACTCCGCGTTGCCCCCGTTTTA TTTCACTTTTTTTTTCTCCCATCATTGGATTCTGTCGTCTGCCCCTCTAG CCCCCATCCTCCACTTCTACCAGCTGGACGATCCAACCGGGCTCACACAG GAGGGGGGGGCTGGACCCCCTCCTGCGGTTCCTGCCTGCGATATTTTTAT CGCGAGAAGGGTACAGCAATCCCTTCCCTCGCGACGGCTAAGCCAATGTC GACAATGAAGTCTATCAGTTTACTAACAACGAGCTTTGAAGGGTGTACCT TCCAACTTAGACCAGGATTTATTGAGAGAGAAAATACTCACTATGCCGGG AGTCGGACCCCCCATGACCTGGCCCTCAGTAGGCTGCGAGGATACCCACT AGACCACCGGGGCAACCTATGTATCCCCGCAAGCATTACCACGACCACTG TTTGGTAGTGCTTGCCACCTTCTGTGCGTGCTGTGTACAAGCAGGATAAT CGCTTCGAAAAGAAGTGGTTCGTGACTAGTCCGACGACACGCCGCGTGCT GTTTGCTTACACCCCCCCTGGCATCCCGCAGTTCGAAAAGGGCGGCTACA GTGACCACGCTTCCTACTCTCTGTCGAAGCTGCTGGACATCATGTTCAAC GCGGAGCTCGCCCGGAGAGCGCCGAAGGGAGTCACGTGCAACTCGCTCGA CCCCGGCACCGTAAACACCAAGATGTTGAGGGCTGGGTGGGGCTTGGGCG GCATCCCTGTGAAGAGGTAAACGGTTTTCTCGGAAGAGACGCCCTGCATT GAGAAATGTCTTAAGTGGATAAGTATGACCTTAAAATAAGAGAGGAACGT CCTCGCCAACATCTTTTGAGGGCAATGCTCTTGTTTTTCCTTGTGCAGAC CAGAGGTGAGGGGGGGGGGGGTGCATCCGGTACAACGAACACTAAACCTG CTACTATCGGGAGTCCCGTACCGTGCTTGGTACGGAGAACAATCCATTTC ACCCGCGGGTGTCTTCTGTACAGCCTCTAATGATCTCTCTCTGTCTCTCT GTCTCCTCTCTCTCCCCCCCTCCCTCTCTCTCTATTCTCTCCATCCCTTC ATATGTTTCTACCTGCCTCCGATCTCGTCTAATCGCTCTCGTGACTTACC ACGTCGTTCCAGCGCGAACGACCAGTTCTATCTGGCGACGAGTGACGACG TGAGCGACAGCTCCGGCGAGTACTACGTCAGCCGCAGGGTGACCACCCCG CCCCCACCGGCGGAAGACGAAGAGGCGTGCCGGCGGCTGTGGGGGGTGCT GGAAGAGCTCAGCGGCTTCAGCTATGCATGATTATGGCGTGGTGGCTGTT CGTTTGTGTCGTTTTTGTCGGGTCGACAGACCACTCCTTCTAGCCTGGAG CATGAGCGTCTCGTACGTACCTAGAGCACAATGTGGCTTCGAAGGCTTGT ACGGCCGTATAATGATTTGCTAAGACGTGGCATGTTCCACAACCGCTGCT GGAGGTAAGAGCAGCCACACGGCCGTCGAGAGCGAGTACTCTGGGTTTGG TGACTCCGTCCCAGACATTCTTTACGAACCGCTCTCAGCGACGTACATGT TTGGGAGTCAAAAGGAAGAGGGCCGTGGACGAAAAATAAGCGGGGGGGGA GCTGTATGAACGATTCAGCAAAGGGGGCTTTGTTGCTCGGTTGGTGTGGT TTGTAGATTATGTACATAGAAATGGCGCGTGCGTGCACGCCCTGTGCCCC CCCCCTACTTTTTCCAAACCCTAAGAAGACTAGATGCTAGGAGTACCCTA CGTGATTGTTCGCGAGCCAAAAGACCGCGTGGTCTTGTGAAGACGCCATT TGGACGGGCTAAAACAATAAGATGATATCCAAAGCTCCCCTCAACCGCGC GTGCTGAAAGCGCATCTTTATGCAACTGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1182:1115..5595+

>mRNA_Ecto-sp13_S_contig1182.1569.1 ID=mRNA_Ecto-sp13_S_contig1182.1569.1|Name=mRNA_Ecto-sp13_S_contig1182.1569.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=948bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1182:1115..5595+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCATCATCGAAGGGCCGCATGCTGTCTTTCGTGTTGGTGTGTCCAAC
CTTGTGCAGCGCGTTCTTAAGTGCGAGTAGATCGTTGTCATCGCTCGATG
TCGGACGAACAACAAAAATGTCCGCCGCTGTGACTGGGAGACTGGCCGAC
AAGGTTTATCTTGTGACGGGTTCGACTGATGGCATCGGGAAGCATACGGC
CTCGCGCCTCGTCGAGGAAGGCGCGACGGTGCTGGTCCACGGCAGGCGAG
AAGCCGTCGTAAGAGAGGCCGTCGAGTACGTCGGAGGAGGAAAGGGGAAG
GTGGAGGGGATCGTGGCCGACTTGAGCTCGCTGCGAGGGGCGAACCACTT
GTGCGATGAGGTTCTACGTCGGACCGACAGGCTAGACTGCCTCCTCAACA
ACGCAGGCGTTTTCGAGGCTGACTTTCGGCACAGCGACGACGGCCTGGAG
TACACCTTTGCAGTGAACGTGCTCGCACCGTACGTCATCACCGGCCGTCT
GCTGGACTTACTCGCCAAGGCACCCGGTGGCGGTCGCGTAGTGAACGTGG
CGAGCCTGTCCGCGTCCTACTCGCTGGACTTCGACAATCTTCAGTTCGAA
AAGGGCGGCTACAGTGACCACGCTTCCTACTCTCTGTCGAAGCTGCTGGA
CATCATGTTCAACGCGGAGCTCGCCCGGAGAGCGCCGAAGGGAGTCACGT
GCAACTCGCTCGACCCCGGCACCGTAAACACCAAGATGTTGAGGGCTGGG
TGGGGCTTGGGCGGCATCCCTGTGAAGAGCGCGAACGACCAGTTCTATCT
GGCGACGAGTGACGACGTGAGCGACAGCTCCGGCGAGTACTACGTCAGCC
GCAGGGTGACCACCCCGCCCCCACCGGCGGAAGACGAAGAGGCGTGCCGG
CGGCTGTGGGGGGTGCTGGAAGAGCTCAGCGGCTTCAGCTATGCATGA
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