mRNA_Ecto-sp13_S_contig11809.1559.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11809.1559.1 vs. uniprot
Match: D8LEL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL1_ECTSI) HSP 1 Score: 236 bits (601), Expect = 9.000e-77 Identity = 121/130 (93.08%), Postives = 123/130 (94.62%), Query Frame = 1
Query: 1 VTGQLADAYLHQAAALWITERYIAFISTCVMFSLSLGAPVRQLFSNPLESSDPEVSDALARRKDRRATIGEDSTAPTNSTTDGADSELYESALWTYEKVAAMPSVSAVFDEFARKALCQESILFLKDVTR 390
VTGQLADAYLHQAAALWITERYIAFIS+CVMFSLSLGAP RQLF NPLESSDPEVSDALARRKDRRA IG DSTAPTNST DGADSE+ ES LWTYEKVAAMPSVSAVFDEFARKALCQESILFLKDVTR
Sbjct: 27 VTGQLADAYLHQAAALWITERYIAFISSCVMFSLSLGAPARQLFFNPLESSDPEVSDALARRKDRRAAIGGDSTAPTNSTVDGADSEMSESTLWTYEKVAAMPSVSAVFDEFARKALCQESILFLKDVTR 156
BLAST of mRNA_Ecto-sp13_S_contig11809.1559.1 vs. uniprot
Match: D8LEK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK8_ECTSI) HSP 1 Score: 123 bits (308), Expect = 6.610e-30 Identity = 72/130 (55.38%), Postives = 85/130 (65.38%), Query Frame = 1
Query: 7 GQLADAYLHQAAALWITERYIAFISTCVMFSLSLGAPVRQLFSNPLESSDPEVSDALARRKDRRATIGEDSTAPTNSTTDGADSE---LYESALWTYEKVAAMPSVSAVFDEFARKALCQESILFLKDVT 387
G D + + A W+ R + FIS V+F LSLG P+RQL +PLESSDP VS ALA+R+ R +G +ST T T A SE + ALWTYEKV AMPSVS F EF+RKALCQESI FLKDVT
Sbjct: 258 GHFGDNHSSEDVARWVNTRIMGFISATVIFFLSLGLPIRQLVFDPLESSDPRVSRALAKRRQGR--LGPESTT-TPCCTSSAGSEFSGVNTLALWTYEKVEAMPSVSVAFHEFSRKALCQESIFFLKDVT 384
BLAST of mRNA_Ecto-sp13_S_contig11809.1559.1 vs. uniprot
Match: A0A6H5JZE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZE3_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 7.790e-22 Identity = 61/102 (59.80%), Postives = 72/102 (70.59%), Query Frame = 1
Query: 106 LGAPVRQLFSNPLESSDPEVSDALARRKDRRATIGEDSTAPTNSTTDGADSE---LYESALWTYEK----VAAMPSVSAVFDEFARKALCQESILFLKDVTR 390
LG P+RQL +PLESSDP VS ALA+R R+ +G +ST ++ T AD E + ALWTYEK V AMPSVSA FDEF+RKALCQESI FLKDVT+
Sbjct: 169 LGLPIRQLVFDPLESSDPRVSRALAKR--RQGDLGPESTT-SHCCTSSADFEFSGVNTLALWTYEKMCLCVEAMPSVSAAFDEFSRKALCQESIFFLKDVTK 267
BLAST of mRNA_Ecto-sp13_S_contig11809.1559.1 vs. uniprot
Match: A0A6H5KGT8_9PHAE (RGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGT8_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 9.440e-15 Identity = 56/175 (32.00%), Postives = 90/175 (51.43%), Query Frame = 1
Query: 49 WITERYIAFISTCVMFSLSLGAPVRQLFSNPLESSDPEVSDALAR------RKDRRATIGEDSTAPTNSTTDGADSELYESALWTYEKVAAMPSVSAVFDEFARKALCQESILFLKDVTRFQSDGYDDLNNDWGGRDVMEYSSSFDAFSQIVIRYIFDGAPDEVNISSHSKTEIV 555
+I + ++ V+F LS+ PVR+L +P+ S ++ A+ R +K RR T S E +WTY+K+A +++ F FA +ALCQES+ FL++V+R+Q++ Y + GG+ +AF I R++ DGAPDEVN+S K I+
Sbjct: 198 FINPPNMQLLTISVLFGLSVIDPVRRLKFSPMAQSSAPMTRAVLRSSASKTQKPRRGXXXXQQRKITPS-------EEAAQHMWTYDKIALDNAMAEAFRVFANRALCQESVWFLEEVSRYQNEDYTIASPLGGGK--------IEAFEAIAKRFVEDGAPDEVNLSYTDKKNII 357
BLAST of mRNA_Ecto-sp13_S_contig11809.1559.1 vs. uniprot
Match: D7G2T5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T5_ECTSI) HSP 1 Score: 76.6 bits (187), Expect = 2.160e-13 Identity = 39/102 (38.24%), Postives = 62/102 (60.78%), Query Frame = 1
Query: 277 LWTYEKVAAMPSVSAVFDEFARKALCQESILFLKDVTRFQSDGYDDLNNDWGGRDVMEYS--SSFDAFSQIVIRYIFDGAPDEVNISSHSKTEIVDIYQAGQ 576
+W +E++A P ++A F++++++ALC ES+LFL +V+R+QSD Y R E S + F F I +I G+P+EVNIS K I+D+Y G+
Sbjct: 119 VWNFERLARTPLLAAAFEDYSKRALCHESVLFLSEVSRYQSDDYAT-----SARPSSESSCPTQFGTFCYITDTFIKGGSPEEVNISDADKKAILDVYHKGE 215
BLAST of mRNA_Ecto-sp13_S_contig11809.1559.1 vs. uniprot
Match: D7G2T7_ECTSI (RGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2T7_ECTSI) HSP 1 Score: 76.3 bits (186), Expect = 8.500e-13 Identity = 37/106 (34.91%), Postives = 62/106 (58.49%), Query Frame = 1
Query: 259 ELYESALWTYEKVAAMPSVSAVFDEFARKALCQESILFLKDVTRFQSDGYDDLNNDWGGRDVMEYSSSFDAFSQIVIRYIFDGAPDEVNISSHSKTEIVDIYQAGQ 576
E E +W +E++A P ++ F++++++ALC ES+LFL +V+R+Q + Y D + S F F I +I G+P+EVNIS K I+++YQ G+
Sbjct: 362 EREEMEVWNFERLARTPLLAVAFEDYSKRALCHESVLFLTEVSRYQHEDYATPTKDA----IRSSPSQFGTFCYITNTFIKAGSPEEVNISDADKKRILELYQKGE 463
BLAST of mRNA_Ecto-sp13_S_contig11809.1559.1 vs. uniprot
Match: D7G2T8_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T8_ECTSI) HSP 1 Score: 75.9 bits (185), Expect = 1.210e-12 Identity = 38/107 (35.51%), Postives = 64/107 (59.81%), Query Frame = 1
Query: 256 SELYESALWTYEKVAAMPSVSAVFDEFARKALCQESILFLKDVTRFQSDGYDDLNNDWGGRDVMEYSSSFDAFSQIVIRYIFDGAPDEVNISSHSKTEIVDIYQAGQ 576
S+ E +W +E++ P ++A F++++++ALC ES+LFL +V+R+Q+D Y N G + F F I +I GAP+EVNIS + I+++YQ G+
Sbjct: 453 SDREEMEVWDFERLGRTPLLAAAFEDYSKRALCHESVLFLSEVSRYQNDDYATPTNAAG-----TCPTQFGTFCYITDTFIKAGAPEEVNISDKDRKLILELYQKGE 554
BLAST of mRNA_Ecto-sp13_S_contig11809.1559.1 vs. uniprot
Match: A0A6H5KIU5_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIU5_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 2.170e-12 Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 1
Query: 295 VAAMPSVSAVFDEFARKALCQESILFLKDVTRFQSDGYDDLNNDWGGRDVMEYSSSFDAFSQIVIRYIFDGAPDEVNISSHSKTEIVDIYQAG 573
+A +P V+ F FA +ALCQESI+FL++VT+++S Y +S F AF+ IV R++ DGA DE+NI K I+ I+Q+G
Sbjct: 1 MAKVPEVAEAFRGFAHRALCQESIMFLEEVTKYESGDYSI---------AKPIASQFAAFNAIVKRFVVDGALDEINIGGTDKERILKIFQSG 84
BLAST of mRNA_Ecto-sp13_S_contig11809.1559.1 vs. uniprot
Match: A0A6H5LEP9_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEP9_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 3.890e-10 Identity = 37/107 (34.58%), Postives = 63/107 (58.88%), Query Frame = 1
Query: 256 SELYESALWTYEKVAAMPSVSAVFDEFARKALCQESILFLKDVTRFQSDGYDDLNNDWGGRDVMEYSSSFDAFSQIVIRYIFDGAPDEVNISSHSKTEIVDIYQAGQ 576
S+ E +W +E++ P ++A F++++++ALC ES+LFL +V+R+Q+D Y N G + F F I +I GAP+EVNI + I+++YQ G+
Sbjct: 382 SDREEMEVWDFERLGRTPLLAAAFEDYSKRALCHESVLFLSEVSRYQNDDYATPTNAAAGT----CPTQFGTFCFITDTFIKAGAPEEVNI----RKLILELYQKGE 480
BLAST of mRNA_Ecto-sp13_S_contig11809.1559.1 vs. uniprot
Match: D7FTV9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV9_ECTSI) HSP 1 Score: 60.5 bits (145), Expect = 2.070e-8 Identity = 28/84 (33.33%), Postives = 51/84 (60.71%), Query Frame = 1
Query: 277 LWTYEKVAAMPSVSAVFDEFARKALCQESILFLKDVTRFQSDGYDDLNNDWGGRDVMEYSSSFDAFSQIVIRYIFDGAPDEVNI 528
+W +E++A+ P ++A F++++++ALC ES+LFL +V+R+Q++ Y F +F I +I G+P+EVNI
Sbjct: 3 VWDFERIASTPLLAAAFEDYSKRALCHESVLFLSEVSRYQNNNYPMPTR---ASSASSPRIQFGSFCYITDTFIKAGSPEEVNI 83 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11809.1559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11809.1559.1 >prot_Ecto-sp13_S_contig11809.1559.1 ID=prot_Ecto-sp13_S_contig11809.1559.1|Name=mRNA_Ecto-sp13_S_contig11809.1559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=193bp VTGQLADAYLHQAAALWITERYIAFISTCVMFSLSLGAPVRQLFSNPLESback to top mRNA from alignment at Ecto-sp13_S_contig11809:242..4967+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11809.1559.1 ID=mRNA_Ecto-sp13_S_contig11809.1559.1|Name=mRNA_Ecto-sp13_S_contig11809.1559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11809:242..4967+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11809:242..4967+ >mRNA_Ecto-sp13_S_contig11809.1559.1 ID=mRNA_Ecto-sp13_S_contig11809.1559.1|Name=mRNA_Ecto-sp13_S_contig11809.1559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=579bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11809:242..4967+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |