mRNA_Ecto-sp13_S_contig11801.1555.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11801.1555.1
Unique NamemRNA_Ecto-sp13_S_contig11801.1555.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11801.1555.1 vs. uniprot
Match: D7FRE0_ECTSI (DUF1084 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRE0_ECTSI)

HSP 1 Score: 367 bits (943), Expect = 1.250e-119
Identity = 196/198 (98.99%), Postives = 196/198 (98.99%), Query Frame = 2
Query:    2 ATFLHALGKLRMLHGKSRSLDTKKLFAMSVLLLCLTRTMGFMTIGALNMRSVGDGGSSSRRSWQNDADERFYEKTMLVLFDLPDFMIVSAYSLLAVVWAEAFLQSRRHWLSARVYKRQLLLGYMIFNSALYAGQLILYTLLFLPSFNQSGVLSVLYLFITSVNLLLPLLLAVLFSYLTCTFSGFPYKSEAAMLRMDRV 595
            ATFLHALGKLRMLHGKSRSLDTKKLFAMSVLLLCLTRTMGFMTIGALNMRSVG  GSSSRRSWQNDADERFYEKTMLVLFDLPDFMIVSAYSLLAVVWAEAFLQSRRHWLSARVYKRQLLLGYMIFNSALYAGQLILYTLLFLPSFNQSGVLSVLYLFITSVNLLLPLLLAVLFSYLTCTFSGFPYKSEAAMLRMDRV
Sbjct:   22 ATFLHALGKLRMLHGKSRSLDTKKLFAMSVLLLCLTRTMGFMTIGALNMRSVGGDGSSSRRSWQNDADERFYEKTMLVLFDLPDFMIVSAYSLLAVVWAEAFLQSRRHWLSARVYKRQLLLGYMIFNSALYAGQLILYTLLFLPSFNQSGVLSVLYLFITSVNLLLPLLLAVLFSYLTCTFSGFPYKSEAAMLRMDRV 219          
BLAST of mRNA_Ecto-sp13_S_contig11801.1555.1 vs. uniprot
Match: A0A835Z1P3_9STRA (DUF1084 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1P3_9STRA)

HSP 1 Score: 185 bits (470), Expect = 2.120e-50
Identity = 103/197 (52.28%), Postives = 137/197 (69.54%), Query Frame = 2
Query:   32 RMLHGKSRSLDTKKLFAMSVLLLCLTRTMGFMTIG--ALNMRSV-----------GDGGSSSRRSWQNDADERFYEKTMLVLFDLPDFMIVSAYSLLAVVWAEAFLQSRRHWLSARVYKRQLLLGYMIFNSALYAGQLILYTLLFLPSFNQSGVLSVLYLFITSVNLLLPLLLAVLFSYLTCTFSGFPYKSEAAMLR 583
            +M    +  L+T+KLF M++LL C+TR MGF+TIG  ALN++S+           GD G+     ++ D+D+RFY+K +LVLFD PDF+ +SAY+LLAVVWAEAFL SR HWLSAR Y++  L+ Y++FN+ALY  QL+LY  LFLPS         LY  +T+VN  LPLLLA LF YLT +FSGFPY++E A+ R
Sbjct:   30 KMRKASTGGLNTEKLFVMTMLLACVTRVMGFVTIGECALNLQSIRVGYDPHRHDGGDSGADDDDDYRQDSDQRFYDKCVLVLFDFPDFVALSAYALLAVVWAEAFLASRSHWLSARRYRQGFLMAYLVFNAALYMAQLLLYGALFLPSSPTGWAARALYAALTTVNFGLPLLLAALFMYLTVSFSGFPYRTERALRR 226          
BLAST of mRNA_Ecto-sp13_S_contig11801.1555.1 vs. uniprot
Match: W7TTU2_9STRA (DUF1084 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTU2_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.530e-46
Identity = 94/199 (47.24%), Postives = 138/199 (69.35%), Query Frame = 2
Query:   26 KLRMLHGKSRSLDTKKLFAMSVLLLCLTRTMGFMTIGALNMRSVGDGGSSSRR------SWQN--DADERFYEKTMLVLFDLPDFMIVSAYSLLAVVWAEAFLQSRRHWLSARVYKRQLLLGYMIFNSALYAGQLILYTLLFLPSFNQSGVLSVLYLFITSVNLLLPLLLAVLFSYLTCTFSGFPYKSEAAMLRMDRVS 598
            +LR LH +   ++T KLF +SVLL C  R + F+ +GA +++S+     +S R      SW +  D D +FYEK +L+LF+LPDF+ VSAY LLA+VWAEAF+QSR HWLS + ++R  LL Y++FN+ LY GQL+LYTLLFLP  NQ  +  +++L +  +N  LP++L +LF YL+  F+GFPYKS  A  +++++S
Sbjct:   28 RLRNLHTRHPEMNTTKLFVLSVLLSCGMRCLSFIALGAFSVQSIAIDNDASGRASSPSSSWSSTQDPDTQFYEKALLILFNLPDFVFVSAYVLLALVWAEAFIQSRSHWLSIKQFRRMWLLSYLVFNACLYLGQLVLYTLLFLPHGNQDFLSKIIFLTLCVINFSLPIILLLLFFYLSIMFAGFPYKSRRAPAKLNKIS 226          
BLAST of mRNA_Ecto-sp13_S_contig11801.1555.1 vs. uniprot
Match: A0A7S1U079_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U079_9STRA)

HSP 1 Score: 154 bits (388), Expect = 4.910e-38
Identity = 82/196 (41.84%), Postives = 134/196 (68.37%), Query Frame = 2
Query:   11 LHALGKLRMLHG-KSRSLDTKKLFAMSVLLLCLTRTMGFMTIGALNMRSVGDGGSSSRRSWQNDADERFYEKTMLVLFDLPDFMIVSAYSLLAVVWAEAFLQSRRHWLSARVYKRQLLLGYMIFNSALYAGQLILYTLLFLPSFNQSGVLSVLYLFITSVNLLLPLLLAVLFSYLTCTFSGFPYKSEAAMLRMDRV 595
            ++   +L+MLH    ++LDT+KLF +++LL C+ RT+ F+ + +L ++S+  GG  +  + + D DE FYEK +LV+FDLPD+ IV+AY LL +V+AE FL +RRHWL     +R+ ++ Y+  NS LY  Q+ LYTLLF+P   QS ++ +L++ + +++  LP+ +A+ + YLT  FS FPY+S+ A  R+ +V
Sbjct:   25 VYTFSRLKMLHAITGQALDTQKLFVVTLLLTCVLRTLSFVGLTSLAVQSIEYGGDDNDDTGERDEDEEFYEKAVLVMFDLPDYTIVTAYLLLVIVYAETFLHARRHWLDPIQMRRRWVVWYLGANSVLYGVQITLYTLLFVPRVPQSLLIQLLFITLGAISFCLPIAVAIGYFYLTYRFSAFPYRSQHAAKRVKKV 220          
BLAST of mRNA_Ecto-sp13_S_contig11801.1555.1 vs. uniprot
Match: A0A7S1U7L3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7L3_9STRA)

HSP 1 Score: 149 bits (377), Expect = 4.390e-36
Identity = 88/220 (40.00%), Postives = 140/220 (63.64%), Query Frame = 2
Query:   11 LHALGKLR--MLHGKSRSLDTKKLFAMSVLLLCLTRTMGFMTIGALNMR--SVGDGGSSS----------RRSWQNDADERFYEKTMLVLFDLPDFMIVSAYSLLAVVWAEAFLQSRRHWLSARVYKRQLLLGYMIFNSALYAGQLILYTLLFLPSFNQSGVLSVLYLFITSVNLLLPLLLAVLFSYLTCTFSGFPYKSEAAMLRMDRVSATDIG*EGER 628
            L+ L KLR  + +  S+ LDT+KL A S+  +C+ R + F+TI  +N R  ++G  GSS+          ++  Q + D  F+EK+MLVLFDLPD+MIV+ ++LL +VWAE FL SR HWLS++ ++R+ L+GY++FN+ +YA QL+LY+LLF+P+ +  G+  +L+  +  +N  +P+    +  YL C F+ FPYK   + L ++R +   I   G R
Sbjct:   24 LYILSKLRKFLKYSGSKLLDTRKLLAASMFFVCVFRCLTFITIALVNRRGYALGFHGSSNPVATVVQEGPQKLRQANLD--FFEKSMLVLFDLPDYMIVTTFTLLVLVWAEVFLDSRAHWLSSKTFRRRALIGYLVFNATVYATQLVLYSLLFVPTISTKGLRVLLFCSVAVLNFFVPITFLGVAIYLYCQFAAFPYKGVRSRLALERTTRVVIWWTGGR 241          
BLAST of mRNA_Ecto-sp13_S_contig11801.1555.1 vs. uniprot
Match: A0A7S0PTK0_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PTK0_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.120e-25
Identity = 77/188 (40.96%), Postives = 115/188 (61.17%), Query Frame = 2
Query:   26 KLRMLHGKSRSLDTKKLFAMSVLLLCLTRTMGFMTIGALNMRSVGDGGSSSRR-----SWQNDA-DERFYEKTMLVLFDLPDFMIVSAYSLLAVVWAEAFLQSRRHWLSARVYKRQLLLGYMIFNSALYAGQLILYT-LLFLPSFNQSGVLSVLYLFITSVNLLLPLLLAVLFSYLTCTFSGFPYKSE 568
            K  +L  + R + TKKL  +SV L+C  R M  + + A+N+ +V    S         S   +A D++FY+K M VLFDLP+ ++VS Y+LL +VWAE FL+SR H  S   +KR  L  YM+FN+ LYA QL+LYT + F+PS     V +++Y  IT +N    L++ + + YL+  FSGFP++S+
Sbjct:   35 KFSVLKLRHREMGTKKLLVLSVGLVCAVRIMTILGVVAMNIANVRAHYSLQPTDLYYVSTTTEAKDQKFYDKAMTVLFDLPNCIVVSTYALLTLVWAECFLESRFHTESTLAWKRSGLKCYMVFNALLYATQLVLYTCIFFVPSVKS--VRTIIYAAITGINFTAVLIVLIFYLYLSVNFSGFPFRSQ 220          
BLAST of mRNA_Ecto-sp13_S_contig11801.1555.1 vs. uniprot
Match: A0A5D6XPJ3_9STRA (DUF1084 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XPJ3_9STRA)

HSP 1 Score: 114 bits (286), Expect = 2.080e-24
Identity = 78/208 (37.50%), Postives = 117/208 (56.25%), Query Frame = 2
Query:   62 DTKKLFAMSVLLLCLTRTMGFMTIGALNMRSV-------GDGGSSSR--------RSWQNDADER---FYEKTMLVLFDLPDFMIVSAYSLLAVVWAEAFLQSRRHWLSARVYKRQLLLGYMIFNSALYAGQLILYTLLFLPSFNQSGVLS------------VLYLFITSVNLLLPLLLAVLFSYLTCTFSGFPYKSEAAMLRMDRV 595
             T +L  +SV L CL RT  F T+   + ++        G GG+  R            +DA ++   FY K + VLF+LPDF+ VS+Y LL +VWAEAF  SRRHW SA  ++R+ ++ Y+IFN  LY  QL+LYT LFL   ++ G+              +++  + + +L LPL++   + YLT + SGFP+KS++A  R+ RV
Sbjct:   46 STVQLLVLSVALGCLFRTATFATLCVFDSQNAELLPAGGGLGGARGRVVVGGDDADLGDDDAAQKELDFYNKVVAVLFNLPDFLFVSSYLLLVLVWAEAFQSSRRHWFSAVDFRRRWMIFYLIFNGTLYVMQLVLYTALFL--LDKDGIFKDDKQDRLNLIPEMIFYVVAATDLFLPLIIFSTWFYLTLSLSGFPFKSQSARFRLKRV 251          
BLAST of mRNA_Ecto-sp13_S_contig11801.1555.1 vs. uniprot
Match: A0A7S4QPE0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QPE0_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.310e-24
Identity = 72/190 (37.89%), Postives = 117/190 (61.58%), Query Frame = 2
Query:   59 LDTKKLFAMSVLLLCLTRTMGFMTIGALNMRSVGDG----------GSSSRRSWQNDADERFYEKTMLVLFDLPDFMIVSAYSLLAVVWAEAFLQSRRHWLSARVYKRQLLLGYMIFNSALYAGQLILYTLLFLPSFNQSGVLSVLYLFITSVNLLLPLLLAVLFSYLTCTFSGFPYKSEAAMLRMDRVS 598
            L+T+KL  +SV  +C+ R M F+ +  +++ +V              ++S  +   D ++ FY+ +M VLFDLP+ ++VS Y LL +VW E FLQSR H + +  Y  + L+GYMIFN  LY+ Q++LY L+FLP   ++ V +VLY+ +T+ NL+  LL+ V + YL+  FSGFP +S   +  + ++S
Sbjct:   53 LNTQKLLVVSVATVCILRIMSFIGVALMDVANVRAHYALQPTGYHIHTNSTIAEPRDKNQSFYDSSMTVLFDLPNAIVVSTYVLLTLVWVECFLQSRFHTMDSSHYHSRGLVGYMIFNIILYSIQMVLYVLIFLPGV-KNVVRTVLYVVMTTTNLVAVLLVFVFYVYLSVAFSGFPPRSLHLLASLRKIS 241          
BLAST of mRNA_Ecto-sp13_S_contig11801.1555.1 vs. uniprot
Match: A0A6V2BXQ0_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2BXQ0_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.350e-24
Identity = 72/190 (37.89%), Postives = 117/190 (61.58%), Query Frame = 2
Query:   59 LDTKKLFAMSVLLLCLTRTMGFMTIGALNMRSVGDG----------GSSSRRSWQNDADERFYEKTMLVLFDLPDFMIVSAYSLLAVVWAEAFLQSRRHWLSARVYKRQLLLGYMIFNSALYAGQLILYTLLFLPSFNQSGVLSVLYLFITSVNLLLPLLLAVLFSYLTCTFSGFPYKSEAAMLRMDRVS 598
            L+T+KL  +SV  +C+ R M F+ +  +++ +V              ++S  +   D ++ FY+ +M VLFDLP+ ++VS Y LL +VW E FLQSR H + +  Y  + L+GYMIFN  LY+ Q++LY L+FLP   ++ V +VLY+ +T+ NL+  LL+ V + YL+  FSGFP +S   +  + ++S
Sbjct:   53 LNTQKLLVVSVATVCILRIMSFIGVALMDVANVRAHYALQPTGYHIHTNSTIAEPRDKNQSFYDSSMTVLFDLPNAIVVSTYVLLTLVWVECFLQSRFHTMDSSHYHSRGLVGYMIFNIILYSIQMVLYVLIFLPGV-KNVVRTVLYVVMTTTNLVAVLLVFVFYVYLSVAFSGFPPRSLHLLASLRKIS 241          
BLAST of mRNA_Ecto-sp13_S_contig11801.1555.1 vs. uniprot
Match: D0MXT9_PHYIT (DUF1084 domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MXT9_PHYIT)

HSP 1 Score: 114 bits (286), Expect = 2.390e-24
Identity = 64/155 (41.29%), Postives = 99/155 (63.87%), Query Frame = 2
Query:  161 DGGSSSRRSWQNDADERFYEKTMLVLFDLPDFMIVSAYSLLAVVWAEAFLQSRRHWLSARVYKRQLLLGYMIFNSALYAGQLILYTLLFLPSFNQ----------SGVLSVLYLFITSVNLLLPLLLAVLFSYLTCTFSGFPYKSEAAMLRMDRV 595
            DGG ++    + + D  FY K + VLF+LPDF+ VS+Y LL +VWAEAF  SRRHW SA +++R+ ++ Y++FN  LY  QL+LY  LFL   N           S + ++++  + + +L LP+++   + YLT + SGFP+KS++A LR+ RV
Sbjct:  107 DGGDAAGSHAEAELD--FYNKVVAVLFNLPDFLFVSSYLLLVLVWAEAFQSSRRHWFSAAMFRRKWMIFYLVFNGGLYLTQLVLYASLFLYDTNGIFDHEKQDRLSPIPAMIFYLVAAADLFLPIIIFSTWLYLTLSLSGFPFKSQSAQLRLQRV 259          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11801.1555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRE0_ECTSI1.250e-11998.99DUF1084 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835Z1P3_9STRA2.120e-5052.28DUF1084 domain-containing protein (Fragment) n=1 T... [more]
W7TTU2_9STRA1.530e-4647.24DUF1084 domain-containing protein n=2 Tax=Monodops... [more]
A0A7S1U079_9STRA4.910e-3841.84Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S1U7L3_9STRA4.390e-3640.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0PTK0_9STRA1.120e-2540.96Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]
A0A5D6XPJ3_9STRA2.080e-2437.50DUF1084 domain-containing protein n=1 Tax=Pythium ... [more]
A0A7S4QPE0_9STRA2.310e-2437.89Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6V2BXQ0_9STRA2.350e-2437.89Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
D0MXT9_PHYIT2.390e-2441.29DUF1084 domain-containing protein n=2 Tax=Phytopht... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11801contigEcto-sp13_S_contig11801:2..3759 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score348.6
Seed ortholog evalue1.9e-93
Seed eggNOG ortholog2880.D7FRE0
Model size1734
Hectar predicted targeting categorysignal peptide
Exons4
EggNOG OGs28PC9@1,2QVZM@2759
Cds size582
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11801.1555.1prot_Ecto-sp13_S_contig11801.1555.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11801 1120..3725 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462622.9041455-UTR-Ecto-sp13_S_contig11801:1..11191681462622.9041455-UTR-Ecto-sp13_S_contig11801:1..1119Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11801 2..1119 -
1681462622.9585207-UTR-Ecto-sp13_S_contig11801:3725..37591681462622.9585207-UTR-Ecto-sp13_S_contig11801:3725..3759Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11801 3726..3759 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462622.9135695-CDS-Ecto-sp13_S_contig11801:1119..12901681462622.9135695-CDS-Ecto-sp13_S_contig11801:1119..1290Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11801 1120..1290 -
1681462622.9282944-CDS-Ecto-sp13_S_contig11801:1886..20181681462622.9282944-CDS-Ecto-sp13_S_contig11801:1886..2018Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11801 1887..2018 -
1681462622.9391394-CDS-Ecto-sp13_S_contig11801:2861..29421681462622.9391394-CDS-Ecto-sp13_S_contig11801:2861..2942Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11801 2862..2942 -
1681462622.949191-CDS-Ecto-sp13_S_contig11801:3527..37251681462622.949191-CDS-Ecto-sp13_S_contig11801:3527..3725Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11801 3528..3725 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11801.1555.1

>prot_Ecto-sp13_S_contig11801.1555.1 ID=prot_Ecto-sp13_S_contig11801.1555.1|Name=mRNA_Ecto-sp13_S_contig11801.1555.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=194bp
MLHGKSRSLDTKKLFAMSVLLLCLTRTMGFMTIGALNMRSVGDGGSSSRR
SWQNDADERFYEKTMLVLFDLPDFMIVSAYSLLAVVWAEAFLQSRRHWLS
ARVYKRQLLLGYMIFNSALYAGQLILYTLLFLPSFNQSGVLSVLYLFITS
VNLLLPLLLAVLFSYLTCTFSGFPYKSEAAMLRMDRVSATDIG*
back to top

mRNA from alignment at Ecto-sp13_S_contig11801:2..3759-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11801.1555.1 ID=mRNA_Ecto-sp13_S_contig11801.1555.1|Name=mRNA_Ecto-sp13_S_contig11801.1555.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3758bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11801:2..3759- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAACTTTCCTGCACGCGCTGGGCAAGCTGAGGATGCTGCACGGGAAGT CCCGCTCCCTCGACACCAAGAAGCTGTTTGCCATGAGCGTGCTGCTGCTG TGCCTCACACGCACCATGGGCTTCATGACGATCGGCGCCCTCAACATGCG GAGCGTTGGCGATGGCGGATCGTCGTCCAGACGCTCTTGGCAGAACGACG CTGATGAGCGCTTCTATGAGAAGACCATGCTGGTGTGTACCGCACCATAC CTCAGGCTTGTCGAGTCCCCGGAGTGCTTCGCGTGCACAAGTCTTCGTAC TGCTTGACTTGAGCTGGGATGAAAATGATCCATGTGGTGCATGCTTGCAC CAGCTCTGCTGTGTTGCGGTACGTAGCTTGCGTTCTTATGCCATGGCAAC TGTTGTTGCTGCAAAGGCAACTTGGTGGCGCTTCTTGGGGAACGGAGACG TGATGGCATAAGACACCATGATCCACGACCCCCCCGCCCTCCTTTGCAGC AGGTTCTCTGCGTGTGGTGTACGTATGGACAATCGAAACCCCATCCGAGT GTTGTTTGCTTGTCTCACGTCAATTTTATCGCGGAACTGCTCTCGAGCAC CCCGCACCCAACTGGGGCGGCCCAACGAGAATCGACGCAAGAGGGGTGTG GTGAGGAAGGCCGTTGAAAGGATGGGGTCCTTGCCACACTTGCTGTGATG TGTTGAGGCGCTCACTTTCCGCTCTGGTTCCCGTAGAAACTTTACTTGCT TCTGCCCGTGTGGGGTTGCCTCGTGTTTGCGACCTCGTCGCTTCTGCTCA CCGGCCGTCGATTGTAGGTCCTGTTCGATCTTCCGGACTTCATGATCGTG AGCGCCTACAGCCTCCTGGCGGTTGTCTGGGCGGAGGCCTTCCTGCAGGT ACATGAAAAATTTTGGGGGGTTGCTGTCGGCTTTGCTTTGTTGCGGTTGC AGTTTTAGGGGGTTGCGGTGCTGGTCGCAAAGGCCCTGTGCGCGGAGTGC CTCTTTTGAGTTTTTTTTTGTCGGGTTTTGGGGAAGCCACTCACCCACGC TTGGCGCTGCTATGTACTACGATAGAAAGCGCAGGTAGTCTATTGACGTG TTCCTTAGAGGTTTGGCAGATGTTGCTGCAATAGTCCGCACATGTACCTC GAAAGACGTACAAAGATGACCCATGCACCACGGTTTTTTCTCCACCTCGT GCTCTCGACGCGTCCGCCAGAGTCGCACAGTTCACACGCTACAGAATCCC ACACACACACACACTGATGTGTTTTCGTCTCGCAGCCGATTGGCGCGCCA TTTGTGGCTCTCTCAGAACACGGGAGATTCCGTAAGAGGGACATTCCGCC ACGCAGTGGCGTTGGTGTCTTCCTATCTCCCCCGAGGCCCTCCTCTCCGG GGAGCCCGCGAACTACGAGTAGTTGTTGTCCTGCGATACGATCGACGTCT ATGATAGGCGAACCGGTCAGCGCGGTCGACGCCGTACCACCGAACACACA CACGCACGCATGCCGATTGTCCCGCGACGGGTTCCCAAGTCATGACTCGT AGAAGCACTTTCTGTTTTCAGCGGCAGTGAGACTGACGTCTTTTCATTGG TCAGCCAGATAGTGCGGTCGATGCTAACAATATGGACACATTCAAACACC CATGCCACCGTTACCGTTCCTTGTCGGGTTGTTGCGACGCGGACGCGGAT GCCGGGGCTTCCTCAACCGGCCCGTTTCGTGCGGCGAGCAGTCTCGTCGC CACTGGCTTTCGGCGCGGGTGTACAAGCGGCAGCTGTTGCTGGGCTACAT GATCTTCAACTCGGCGCTGTACGCCGGGCAGCTAATCCTCTACACGCTGC TCTTCCTCCCCAGCTTCAACCAGGTGAGCAAGTTTTTGGTCCATTGAGCG TGCTTCCCTCGGCTTCTTTGTTTTGTGCCCTGGCTTTTTTGTTCGACCAT GCCAAGTACAGGCGGGACCAGCAGCCGTTTCGTGTTTCGTAACGCATTCA TACGTGTGAACTGTTTCGAACACGCGAACGGTAGCCCACTGCTGTGGTTA TTATTTTGTCATTATGGTGTCATTTACCCCCCCCCCCCCCACATTTCGCT ACGGACCAGTACTCACGGGGAACGCAACACGATGTCGGGGAAGACCCGCG GAAGACATTTTTGACGGGGGGCCGCCATCTTTATTGCCCACAATAGCAGT GATTGCACAGGAAAGTGAGCGGCTTAAGAATGCAGCGCTCTTTGTGTTGC CCTGTCCTTGACCGGAGTATTTGTGGTTGAACAAAGAGGGCGGCCTTGCA TCAGATCAGACTTTGGACTACTATGGCCCATCACAGCGCCCACCTCATGT CTCCGAGACGCGATATTTGTTGCTTACCTCCACGCCGTGACCTCCCGTCC TTTCTTGCCCTGTTTCCCTATTGGTCTTTCCCGTATCCGATTTCCCTTCC CTGCCGACGGACGGGACAGTCCGGGGTGCTCTCGGTGCTCTACCTGTTCA TCACGTCGGTCAACCTTCTCCTGCCTCTCCTCCTGGCGGTGCTGTTCTCC TACCTCACGTGCACCTTTTCCGGTTTTCCTTACAAGTCGGAGGCGGCAAT GCTCAGAATGGATCGGGTAAGCGCTACAGATATAGGGTGAGAGGGAGAGA GAGAGAGCGCGCGAGAAAGCCCTATATATTAATTGGGGGCAACGTTGATT GTGTCAAATAGGAGACACAATTTTGGTTACGAATAGTATGCGGTGAAAAT TAGCCTCGCAAAACCAAGATGCCCCCGTGAGTCTCTGTGAATCCACAATC GCATTTTGTTTCTTTGCGGTAGAAAAATAATTGCGCGAACTTACGGGTTG CATCCGCCTCGAGAAGAGGCAAGTACGAAAAAGAGCGCGGGGGCGAGTAA GAGCCTTGAGCCGTATCATGAAGTTGCTTGGTTTGGTACCCGTAAGGGCC CCTGTGCTTTGTTTTCAACACAATTGTTTGCGATCGCGAACTTCGGGCCC ACGTAAACCGCGACGGCGAGTCTGTAGTGTACACGGTCCAACTCCGCTTG ATTCTGTTTGGTGCGACTTTCTGTAACCCAAGCACGTTGCGTGACAGTCG TCGATCCGTGATCCGCCATGCATGTGATAGGGTGTGCGAACGCCTGTATC GTTTCTCGTAAATTTCCTATTTTCTAGTTCTTCCGTAATACCTCTCTTTT CCATGACAGCACACCCGGTAGTATACCAACTTGTAGGAACTTCTCAAGGC AGGAATGGGAATTCAAAAGGATGCAGAGTCTCCAAAGTGAAAATAATGAA CATCAGGGTAACAGTGTAAACGGAAGTAGGTACCTGCTTGAACCGACCGA AGATTGAATGGAAGGGCAAAGACTTCTTGTCCACTAAAAGTTGTTGTTCT TGACCCACCATTCACGCCTCGGCGATGTTTCGCAACACGTACCACGTGAA ACGTACTGCTCGGTTTCGAGAGCACGGGGAGGAACTATTGTAGATGCACA TAATCCTCTTTTGCTCGCGCTTCAGGTACAAATCGGACAAATTGTTTGGG ATTGTGTTTTTTGAGTGATTGGGGCACACGTATCAACCCGCAGCTCAGAT TTAGAGTATGGCGTGCTTGGGCCACCCTGTCTTTTTTTGGGGCAAGTGAA GGTCTGTCTGTGCGTGGAGCACGTGGTGATGGCGTACACAGCGTGGATTA AAAACGCAAGTGAACCTACGGATGGACGGACAACACAACATTCCGCTGAA ACGCAACA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11801:2..3759-

>mRNA_Ecto-sp13_S_contig11801.1555.1 ID=mRNA_Ecto-sp13_S_contig11801.1555.1|Name=mRNA_Ecto-sp13_S_contig11801.1555.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=582bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11801:2..3759- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCACGGGAAGTCCCGCTCCCTCGACACCAAGAAGCTGTTTGCCAT
GAGCGTGCTGCTGCTGTGCCTCACACGCACCATGGGCTTCATGACGATCG
GCGCCCTCAACATGCGGAGCGTTGGCGATGGCGGATCGTCGTCCAGACGC
TCTTGGCAGAACGACGCTGATGAGCGCTTCTATGAGAAGACCATGCTGGT
CCTGTTCGATCTTCCGGACTTCATGATCGTGAGCGCCTACAGCCTCCTGG
CGGTTGTCTGGGCGGAGGCCTTCCTGCAGTCTCGTCGCCACTGGCTTTCG
GCGCGGGTGTACAAGCGGCAGCTGTTGCTGGGCTACATGATCTTCAACTC
GGCGCTGTACGCCGGGCAGCTAATCCTCTACACGCTGCTCTTCCTCCCCA
GCTTCAACCAGTCCGGGGTGCTCTCGGTGCTCTACCTGTTCATCACGTCG
GTCAACCTTCTCCTGCCTCTCCTCCTGGCGGTGCTGTTCTCCTACCTCAC
GTGCACCTTTTCCGGTTTTCCTTACAAGTCGGAGGCGGCAATGCTCAGAA
TGGATCGGGTAAGCGCTACAGATATAGGGTGA
back to top