mRNA_Ecto-sp13_S_contig1180.1553.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1180.1553.1
Unique NamemRNA_Ecto-sp13_S_contig1180.1553.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1180.1553.1 vs. uniprot
Match: D7G7M3_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7M3_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 1.130e-27
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1
Query:    1 VHCAASQGLTFTVQALLAEGHIACDAKDRFGKTPLHWAAGQGHVDIVLALMDAGAMV 171
            +HCAASQGLTFTVQALLAEG IACDAKDRFGKTPLHWAAGQGHVDIVL LMDAGA+V
Sbjct:   61 IHCAASQGLTFTVQALLAEGRIACDAKDRFGKTPLHWAAGQGHVDIVLVLMDAGALV 117          
BLAST of mRNA_Ecto-sp13_S_contig1180.1553.1 vs. uniprot
Match: A0A6H5L5T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T2_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.720e-24
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 1
Query:    1 VHCAASQGLTFTVQALLAEGHIACDAKDRFGKTPLHWAAGQGHVDIVLALMDAGAMV 171
            +HCAASQGLTF VQALLAE   ACDAKDRFGKTPLHWAAGQGHVD VLAL+DAGA+V
Sbjct:   53 IHCAASQGLTFAVQALLAERRTACDAKDRFGKTPLHWAAGQGHVDTVLALVDAGALV 109          
BLAST of mRNA_Ecto-sp13_S_contig1180.1553.1 vs. uniprot
Match: A0A6H5L664_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L664_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 8.230e-24
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = 1
Query:    1 VHCAASQGLTFTVQALLAEGHIACDAKDRFGKTPLHWAAGQGHVDIVLALMDAGAMV 171
            +HCAASQGLTF VQALLAE   ACDAKDRFGKTPLHWAAGQGHVD VLAL++AGA+V
Sbjct:   60 IHCAASQGLTFAVQALLAERRTACDAKDRFGKTPLHWAAGQGHVDTVLALVNAGALV 116          
BLAST of mRNA_Ecto-sp13_S_contig1180.1553.1 vs. uniprot
Match: W6KKL4_9TRYP (Uncharacterized protein n=1 Tax=Phytomonas sp. isolate EM1 TaxID=134006 RepID=W6KKL4_9TRYP)

HSP 1 Score: 56.6 bits (135), Expect = 5.450e-8
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 1
Query:    1 VHCAASQGLTFTVQALLAE---GHIACDAKDRFGKTPLHWAAGQGHVDIVLALMDAGAMVDSRDHFKATPLMLAALGG 225
            +H  A  G     QA++A         DA D  G TPLH+A  QGH+++ + L++AGA  ++RD  K TPL LA+L G
Sbjct:   68 LHHVAYAGNLDLAQAIIAAFPAESAGLDAPDAGGWTPLHYAVDQGHLEMTMLLLEAGANANARDESKRTPLHLASLRG 145          
BLAST of mRNA_Ecto-sp13_S_contig1180.1553.1 vs. uniprot
Match: W2S116_9EURO (HET domain-containing protein n=1 Tax=Cyphellophora europaea CBS 101466 TaxID=1220924 RepID=W2S116_9EURO)

HSP 1 Score: 56.6 bits (135), Expect = 1.480e-7
Identity = 30/71 (42.25%), Postives = 41/71 (57.75%), Query Frame = 1
Query:    1 VHCAASQGLTFTVQALLAEGHIACDAKDRFGKTPLHWAAGQGHVDIVLALMDAGAMVDSRDHFKATPLMLA 213
            +HCAA  G    V++LLA+G    +A D+FG  PLH+AA  GH D+V   ++AG     RDH+  T    A
Sbjct:  114 LHCAAEAGNLGLVRSLLAKGADP-EAVDKFGDFPLHYAAFNGHTDVVRLFVEAGVRTSHRDHWGRTAFACA 183          
BLAST of mRNA_Ecto-sp13_S_contig1180.1553.1 vs. uniprot
Match: UPI001EAFCD00 (ankyrin repeat domain-containing protein 50-like n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EAFCD00)

HSP 1 Score: 56.2 bits (134), Expect = 1.960e-7
Identity = 28/75 (37.33%), Postives = 42/75 (56.00%), Query Frame = 1
Query:    1 VHCAASQGLTFTVQALLAEGHIACDAKDRFGKTPLHWAAGQGHVDIVLALMDAGAMVDSRDHFKATPLMLAALGG 225
            +H A+ +G    V+ +L++G    + KD+ G+TP+ WAAG GH ++V  L+  GA V   D F    L  A  GG
Sbjct:   11 LHSASEEGDLSRVEVILSQGGTDINCKDKIGRTPVMWAAGNGHKEVVELLVSKGAKVSIVDRFGNNILHSAGRGG 85          
BLAST of mRNA_Ecto-sp13_S_contig1180.1553.1 vs. uniprot
Match: UPI00201F4CB4 (ankyrin repeat domain-containing protein 50-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201F4CB4)

HSP 1 Score: 56.2 bits (134), Expect = 2.000e-7
Identity = 28/75 (37.33%), Postives = 42/75 (56.00%), Query Frame = 1
Query:    1 VHCAASQGLTFTVQALLAEGHIACDAKDRFGKTPLHWAAGQGHVDIVLALMDAGAMVDSRDHFKATPLMLAALGG 225
            +H A+ +G    V+ +L++G    + KD+ G+TP+ WAAG GH ++V  L+  GA V   D F    L  A  GG
Sbjct:  123 LHSASEEGDLSRVEVILSQGGTDINCKDKIGRTPVMWAAGNGHKEVVELLVSKGAKVSIVDRFGNNILHSAGRGG 197          
BLAST of mRNA_Ecto-sp13_S_contig1180.1553.1 vs. uniprot
Match: A0A3R7D4B6_CLOSI (Ankyrin repeat domain-containing protein 42 n=1 Tax=Clonorchis sinensis TaxID=79923 RepID=A0A3R7D4B6_CLOSI)

HSP 1 Score: 55.8 bits (133), Expect = 2.170e-7
Identity = 31/75 (41.33%), Postives = 41/75 (54.67%), Query Frame = 1
Query:    4 HCAASQGLTFTVQALLAEGHIACDAKDRFGKTPLHWAAGQGHVDIVLALMDAGAMVDSRDHFKATPLMLAALGGH 228
            H AA  G   T++ L+ EG I  + +D  G TPLH AAGQGHV I+  L++ GA     +H    P  +A   GH
Sbjct:  112 HSAAYDGDLTTLRTLIEEGVIKVNERDEQGSTPLHKAAGQGHVKIIQWLLENGADPSIANHMGERPADVARRFGH 186          
BLAST of mRNA_Ecto-sp13_S_contig1180.1553.1 vs. uniprot
Match: A0A4Q2E1A9_9AGAR (Uncharacterized protein n=1 Tax=Candolleomyces aberdarensis TaxID=2316362 RepID=A0A4Q2E1A9_9AGAR)

HSP 1 Score: 54.3 bits (129), Expect = 2.420e-7
Identity = 29/76 (38.16%), Postives = 42/76 (55.26%), Query Frame = 1
Query:    1 VHCAASQGLTFTVQALLAEGHIACDAKDRFGKTPLHWAAGQGHVDIVLALMDAGAMVDSRDHFKATPLMLAALGGH 228
            VH AA       +++L+A+     ++ D   +TPLHWAA  G +DIV  L+D  A  D  D+   TPL++A   GH
Sbjct:    5 VHTAALNKQLMVIRSLIADDPNLINSLDVDERTPLHWAASSGALDIVRFLLDQKAEADRPDNSGWTPLLIAVSAGH 80          
BLAST of mRNA_Ecto-sp13_S_contig1180.1553.1 vs. uniprot
Match: UPI001EE58F58 (ankyrin repeat and KH domain-containing protein mask-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE58F58)

HSP 1 Score: 55.8 bits (133), Expect = 2.800e-7
Identity = 29/76 (38.16%), Postives = 43/76 (56.58%), Query Frame = 1
Query:    1 VHCAASQGLTFTVQALLAEGHIACDAKDRFGKTPLHWAAGQGHVDIVLALMDAGAMVDSRDHFKATPLMLAALGGH 228
            V+ A++ G    V+  L++  +  D KDR G+TPL WAAG+GH D+V   +  GA +   D  ++  L  A  GGH
Sbjct:  120 VYNASTSGDLSKVKFALSQEQVDIDCKDRIGRTPLMWAAGKGHRDVVELFVKRGANLLLTDRSRSNILHYACAGGH 195          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1180.1553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7M3_ECTSI1.130e-2792.98Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5L5T2_9PHAE1.720e-2485.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L664_9PHAE8.230e-2484.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W6KKL4_9TRYP5.450e-841.03Uncharacterized protein n=1 Tax=Phytomonas sp. iso... [more]
W2S116_9EURO1.480e-742.25HET domain-containing protein n=1 Tax=Cyphellophor... [more]
UPI001EAFCD001.960e-737.33ankyrin repeat domain-containing protein 50-like n... [more]
UPI00201F4CB42.000e-737.33ankyrin repeat domain-containing protein 50-like n... [more]
A0A3R7D4B6_CLOSI2.170e-741.33Ankyrin repeat domain-containing protein 42 n=1 Ta... [more]
A0A4Q2E1A9_9AGAR2.420e-738.16Uncharacterized protein n=1 Tax=Candolleomyces abe... [more]
UPI001EE58F582.800e-738.16ankyrin repeat and KH domain-containing protein ma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1180contigEcto-sp13_S_contig1180:18359..18586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score113.2
Seed ortholog evalue5.2e-23
Seed eggNOG ortholog2880.D7G7M3
Preferred nameASB7
Model size228
KEGG koko:K10329
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size228
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462622.8099136-CDS-Ecto-sp13_S_contig1180:18358..185861681462622.8099136-CDS-Ecto-sp13_S_contig1180:18358..18586Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1180 18359..18586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1180.1553.1prot_Ecto-sp13_S_contig1180.1553.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1180 18359..18586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1180.1553.1

>prot_Ecto-sp13_S_contig1180.1553.1 ID=prot_Ecto-sp13_S_contig1180.1553.1|Name=mRNA_Ecto-sp13_S_contig1180.1553.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
VHCAASQGLTFTVQALLAEGHIACDAKDRFGKTPLHWAAGQGHVDIVLAL
MDAGAMVDSRDHFKATPLMLAALGGH
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mRNA from alignment at Ecto-sp13_S_contig1180:18359..18586+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1180.1553.1 ID=mRNA_Ecto-sp13_S_contig1180.1553.1|Name=mRNA_Ecto-sp13_S_contig1180.1553.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1180:18359..18586+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCACTGTGCCGCGTCGCAGGGCCTGACTTTCACCGTCCAAGCCTTGCT TGCGGAAGGGCACATCGCCTGTGACGCAAAAGATCGCTTCGGCAAGACTC CTCTTCACTGGGCTGCCGGGCAAGGACACGTCGACATTGTCTTAGCGCTC ATGGATGCCGGAGCCATGGTCGACTCTCGCGACCACTTCAAGGCCACACC ACTCATGCTTGCGGCCTTGGGCGGGCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1180:18359..18586+

>mRNA_Ecto-sp13_S_contig1180.1553.1 ID=mRNA_Ecto-sp13_S_contig1180.1553.1|Name=mRNA_Ecto-sp13_S_contig1180.1553.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1180:18359..18586+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCACTGTGCCGCGTCGCAGGGCCTGACTTTCACCGTCCAAGCCTTGCT
TGCGGAAGGGCACATCGCCTGTGACGCAAAAGATCGCTTCGGCAAGACTC
CTCTTCACTGGGCTGCCGGGCAAGGACACGTCGACATTGTCTTAGCGCTC
ATGGATGCCGGAGCCATGGTCGACTCTCGCGACCACTTCAAGGCCACACC
ACTCATGCTTGCGGCCTTGGGCGGGCAC
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