mRNA_Ecto-sp13_S_contig118.1550.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig118.1550.1 vs. uniprot
Match: D8LT38_ECTSI (B box-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT38_ECTSI) HSP 1 Score: 2130 bits (5518), Expect = 0.000e+0 Identity = 1187/1308 (90.75%), Postives = 1220/1308 (93.27%), Query Frame = 1
Query: 730 MRTRRWVIGLQSLTRGWLGRRRGQSRRTYTQHLGEERAAGRVRWEQLIRRREDEELLNGARSEDLDDDLELHRTFMKYCRFGDRRNTGRMVVAKLAALCKDAGIIDKRFPVQRVEISFSRLKPKDLSHLPYSSFLAALDDIGTQHPDLRRLADATAAAAQEESVAVLVRAIPGATTTVSSLVEADRGSGVGKKSKRHYIRSAKGGATSPTNADGKRSRAENSRTPTTENRGGKAGELPGRPGAAGSKSPVGGGATARVAXXXXXXXXXXAETAEVECQGGFPPDDQRLLVLLQKYVFINSQAGKEACSEMEAEGRGARRRALDRLEAAAVVVQACVARGCSGRALAREASGRRELHRDNTRLNWAASLLQKRMRAFAARTRTAKMAVKRYYRCLDGLTGAEYYFDPKTGKSSWTKPKILGKFDISTAVVVPAGEEIMVPMCHECAXXXXXXXXXXXXXXXXXXXXVNRIHRTGNASTHLRVPIEXXXXXXXXXXXXXXXXXGDNFCVSCFSYLHRKGRIRRHTFEPLVGMCHDCGDRAQAFQCFGCDAEGRLLLCKRCLEARHHYLLPDQLAEHRIEAVGLRSLKVKRLKEEQSSRARELWMKAESAAAGKRSRDKKMLVAAIKIQTVWRGYLARKRRRNLMDQHLLWKMQRHKDDQQIRKKFTYKVARYVGKARLLKSDTNQEIVLKQYPRWWQSTIMDIVRPTFGWHEGAKMVREQEFFAKKTKRKGRWKVHAARLRLAGELLRVRIERRKQRKYERLRDKAVGVYQDARAKGGVSADHKEELQQNSRKAKRAVQNQEQEREKAEERVKAAENALEALIGPFRLRSNVRAAVTKGMLMPFPVSMQKGKANARLEKGQNMREASDAAIGDSVLKWMPYGRRVRVEPTDPSSVYFLPMAGAGACSRPPPHAFGPFYVVGVKESRQNDKKDKAAAAAASALAGNLASKEPGDTKERPATGLGSGAAATTPAEGIGEGGTAVGADGGEDSVVDLKAQLSPVLILDRQWLLEEAPLCQAYAMPILPVIQKASLSLTGCNTTCSSILMVLRAGIRDSSVVQVAIKVAVVGTHKHRDRLESISDSCFSDREQTKFDDDSNMHARLERWAAGSEARSKRLMLRRRKLFDVEEGFQPEKRRVMEAVESVLALWTSLQEMTDFAKSAAATGLASTQGADGKGMIGGKLGREVVVQLFKKWVQSDDRTKVIIMHRSGKAANEPAVEVVQVVGYIKVDLDTPTPVLREFIRRFCGGWLNEHAKGDHFVMEDTTGAVVRQNREGRKLNATAMDMVQERINKTTRDTESVIFVQDERSRT 4653
M+TRRWVIGLQ+LTRGWLGRRR Q RRTYTQHLGEERAAGRVRW+QLIRRREDEELLNGARSEDLDDDLELHRTFMKYCRFGDRRNTGRMVVAKL ALCKDAGIIDKRFPVQRVEISFSRLKP+DLSHLPY SFLAALDDIGTQHPDLRRL DA AAAAQEESVAVLVRAIPGATT VSSLVEADRGSGVGKKSKR Y RSA+G ATSPTNADGKRSRAENSRTPTTENR KA +L GRPGAAG+KSP GGGATA+VA XXXX AETAEVEC GGF PDDQRLLVLLQK+VF+NSQAGKEACSEMEAEGRGARRRALDRLEAAA+VVQACVARGCSGRALAREASGRRELHR + RLNWAASLLQ RMRAFAARTR AK+A+KRYYRCLDGLTGAEYYFDPKTGKSSWTKPKILGKFDISTAVVVPAGEEIMVPMCHECAXXXXXXXXXXXXXXXXXXXXV+RIHRTGNASTHLRVPIEXXXXXXXXXXXXXXXXXGDNFCVSCF+++HRKGRIRRHTFEPLVGMCHDCGDRAQAFQCFGCD EG LLLCKRCLEARHHYLLPDQLAEHRIEAVG RSLK+KRLKEEQSSRARELWMKAESAA GKRSRDKKML AAIKIQ VWRGYLARKRRR+LMDQHLLWK+QRHKDDQ IRKK TYKVARY GKARLLKSDTNQEIVLKQYPRWWQSTIMDIVRPTFGWHEGAKMVREQEFFAKKTKRKGRWKVHAARLRL GEL+R+R+E RKQRKYERLRDKAVGVYQ ARAKGGVSA HKEELQQ SRKAKRAVQN +QEREKAEERVKAAENALEALIGPFRLR+NVRAAVT+GMLMPFPVSMQKGKANARLEKGQNMRE VLKWMPYGRRVRVEPTDPSSVY LP A AGAC RPP HAFGPFYVVGVKESRQNDKKDKAAAAA SALAGNLASKEPGDTKERPATGLGSGAAATTPAE IGEGGTA GADGGEDSVVDLKAQ SPVLILDRQWLLEEAPLCQAYAMPILPVIQK ILMVLR GIRDSSVVQVAIKVAVVGTH+HRDRLE R QTKFDDDS+MHARLERWAAGSE RSKRLMLRRRKLFDVEEGFQPEKRRVMEAVESVLALWTSLQEMTDFAKSAAATGLASTQGADGKGMIGGKLGREVVVQLFKKWVQSDDRTKVIIMHRSGKAANEPAVEVVQVVGYIKVDLDTPTPVLREFIRR+CGGWLNEHAKGDHFVMEDTTG +VR+NREG KLNATAMDMVQERINKTTRDTESVIFV+DERSRT
Sbjct: 1 MQTRRWVIGLQALTRGWLGRRRAQFRRTYTQHLGEERAAGRVRWKQLIRRREDEELLNGARSEDLDDDLELHRTFMKYCRFGDRRNTGRMVVAKLTALCKDAGIIDKRFPVQRVEISFSRLKPRDLSHLPYPSFLAALDDIGTQHPDLRRLGDAAAAAAQEESVAVLVRAIPGATTAVSSLVEADRGSGVGKKSKRPYNRSARGEATSPTNADGKRSRAENSRTPTTENRAEKAAKLSGRPGAAGAKSPAGGGATAKVAGAKAAXXXXTAETAEVECLGGFRPDDQRLLVLLQKFVFVNSQAGKEACSEMEAEGRGARRRALDRLEAAAMVVQACVARGCSGRALAREASGRRELHRHDARLNWAASLLQTRMRAFAARTRAAKLAMKRYYRCLDGLTGAEYYFDPKTGKSSWTKPKILGKFDISTAVVVPAGEEIMVPMCHECAXXXXXXXXXXXXXXXXXXXXVDRIHRTGNASTHLRVPIEXXXXXXXXXXXXXXXXXGDNFCVSCFAHIHRKGRIRRHTFEPLVGMCHDCGDRAQAFQCFGCDTEGCLLLCKRCLEARHHYLLPDQLAEHRIEAVGFRSLKLKRLKEEQSSRARELWMKAESAATGKRSRDKKMLAAAIKIQAVWRGYLARKRRRHLMDQHLLWKIQRHKDDQ-IRKKLTYKVARYFGKARLLKSDTNQEIVLKQYPRWWQSTIMDIVRPTFGWHEGAKMVREQEFFAKKTKRKGRWKVHAARLRLGGELIRLRMESRKQRKYERLRDKAVGVYQHARAKGGVSAAHKEELQQISRKAKRAVQNHQQEREKAEERVKAAENALEALIGPFRLRNNVRAAVTEGMLMPFPVSMQKGKANARLEKGQNMRE---------VLKWMPYGRRVRVEPTDPSSVYLLPEAEAGACPRPPSHAFGPFYVVGVKESRQNDKKDKAAAAA-SALAGNLASKEPGDTKERPATGLGSGAAATTPAESIGEGGTAAGADGGEDSVVDLKAQSSPVLILDRQWLLEEAPLCQAYAMPILPVIQK--------------ILMVLRTGIRDSSVVQVAIKVAVVGTHQHRDRLE---------RWQTKFDDDSDMHARLERWAAGSEDRSKRLMLRRRKLFDVEEGFQPEKRRVMEAVESVLALWTSLQEMTDFAKSAAATGLASTQGADGKGMIGGKLGREVVVQLFKKWVQSDDRTKVIIMHRSGKAANEPAVEVVQVVGYIKVDLDTPTPVLREFIRRYCGGWLNEHAKGDHFVMEDTTGEIVRRNREGGKLNATAMDMVQERINKTTRDTESVIFVRDERSRT 1274
BLAST of mRNA_Ecto-sp13_S_contig118.1550.1 vs. uniprot
Match: A0A6H5KFP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP2_9PHAE) HSP 1 Score: 733 bits (1892), Expect = 2.840e-245 Identity = 426/588 (72.45%), Postives = 438/588 (74.49%), Query Frame = 1
Query: 3034 QDARAKGGVSADHKEELQQNSRKAKRAVQNQEQEREKAEERVKAAENALEALIGPFRLRSNVRAAVTKGMLMPFPVSMQKGKANARLEKGQNMREASDAAIGDSVL--------KWMPYGRRVRVEPTDPSSVYFLPMAGAGACSRPPPHAFGPFYVVGVKESRQNDKKDKAAAAAASALAGNLASKEPGDTKERPATGLGSGAAATTPAEGIGEGGTAVGADGGEDSVVDLKAQLSPVLILDRQWLLEEAPLCQAYAMPILPVIQKASLSLTGCNTTCSSILMVLRAGIRDSSVVQVAIKVAVVGTHKHRDRLESISDSCFSDREQTKFDDDSNMHARLERWAAGSEARSKRLMLRRRKLFDVEEGFQPEKRRVMEAVESVLALWT----------------------------------------SLQEMTDFAKSAAATGLASTQGADGKGMIGGKLGREVVVQLFKKWVQSDDRTKVIIMHRSGKAANEPAVEVVQVVGYIKVDLDTPTPVLREFIRRFCGGWLNEHAKGDHFVMEDTTGAVVRQNREGRKLNATAMDMVQERINKTTRDTESVIFVQDERSRT 4653
Q ARAKGGVSADHK+ELQQNSRKAKRAVQNQEQEREKAEERVKAAENALEALIGPFRLR+NVRAAVTKGMLMPFPVSMQKGKANARLEKGQNMREASDAAI DSVL KWMPYGRRVRVEPTDPSSVYFLP AG AC RPP HAFGPFYVVGVKESRQ+DKK+KAAA AA ALA NLASKEPGDT+ERPATGLGSGAAATTPAE I EGGTAVGADGGEDS+ DLK+ H + ++ FSDREQTKFDDDSNMHARLERWAAGSEA SKRLMLRRRKLFDVEEGFQPEKRRVMEAVESVLALWT SLQEMTDFAKSAAATGLASTQGADGKG+IGGKLGREVVVQLFKKWVQSDDRTKVIIMHRSGKAANEPAVEVVQVVGYIKVDLDTPTPVLREFIRRFCGGWLNEHAKGDHFVMED TG VVR+NREG K NATAMDMVQERINK TRDTESVIFVQDERSRT
Sbjct: 35 QHARAKGGVSADHKDELQQNSRKAKRAVQNQEQEREKAEERVKAAENALEALIGPFRLRNNVRAAVTKGMLMPFPVSMQKGKANARLEKGQNMREASDAAICDSVLSCVVCSVLKWMPYGRRVRVEPTDPSSVYFLPEAGTRACPRPPSHAFGPFYVVGVKESRQSDKKEKAAATAALALAENLASKEPGDTRERPATGLGSGAAATTPAESIDEGGTAVGADGGEDSLGDLKS---------------------------------------------------------------------------HAPSIFGFLNTAFSDREQTKFDDDSNMHARLERWAAGSEAWSKRLMLRRRKLFDVEEGFQPEKRRVMEAVESVLALWTRILQPACRGDLRVWRSRRNMKTDETVATFSLALFGGTLNPSLQEMTDFAKSAAATGLASTQGADGKGIIGGKLGREVVVQLFKKWVQSDDRTKVIIMHRSGKAANEPAVEVVQVVGYIKVDLDTPTPVLREFIRRFCGGWLNEHAKGDHFVMEDATGTVVRRNREGGKQNATAMDMVQERINKATRDTESVIFVQDERSRT 547
BLAST of mRNA_Ecto-sp13_S_contig118.1550.1 vs. uniprot
Match: A0A6H5KU11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU11_9PHAE) HSP 1 Score: 644 bits (1661), Expect = 4.680e-214 Identity = 372/502 (74.10%), Postives = 385/502 (76.69%), Query Frame = 1
Query: 940 LHRTFMKYCRFGDRRNTGRMVVAKLAALCKDAGIIDKRFPVQRVEISFSRLKPKDLSHLPYSSFLAALDDIGTQHPDLRRLADATAAAAQEESVAVLVRAIPGATTTVSSLVEADRGSGVGKKSKRHYIRSAKGGATSPTNADGKRSRAENSRTPTTENRGGKAGELPGRPGAAGSKSPVGGGATARVAXXXXXXXXXXAETAEVECQGGFPPDDQRLLVLLQKYVFINSQAGKEACSEMEAEGRGARRRALDRLEAAAVVVQACVARGCSGRALAREASGRRELHRDNTRLNWAASLLQKR------------------------------MRAFAARTRTAKMAVKRYYRCLDGLTGAEYYFDPKTGKSSWTKPKILGKFDISTAVVVPAGEEIMVPMCHECAXXXXXXXXXXXXXXXXXXXXVNRIHRTGNASTHLRVPIEXXXXXXXXXXXXXXXXXGDNFCVSCFSYLHRKGRIRRHTFEPLVGMCHDCGDRAQAFQ 2355
+ +TFMKYCRFGDRRNTGRMV AKLAALCKDAGIIDKRFPVQRVEISFSRLKPKDLSHLPYSSFLAALDDIGTQHPDLRRLADA AAAQEESVAVLVRAIPGATT VSSLVEADRGSGVGKKSKR Y RSAKGGATSPTNADGKRSRAENSRTPTTENR KA +L RPGAAG+ XXXXXXXXX AET EV+ GGF PDDQRLLVLLQKYVF+NSQAGKEACSEMEAEGRGARRRALDRLEAAAVVVQAC+ARGCSGRALAREASGRREL R NTRLNWAASLLQ R MRAFAARTR AKMAVKRYYRCLDGLTGAEYYFDPKTGKSSW KPKILGKFDISTAVVVPAGEEIMVPMCHECA +T +V ++ GDNFCVSCF+YLHRKGRIRRHTFEPLVG+CHDCGDRAQ Q
Sbjct: 13 IMQTFMKYCRFGDRRNTGRMVAAKLAALCKDAGIIDKRFPVQRVEISFSRLKPKDLSHLPYSSFLAALDDIGTQHPDLRRLADAATAAAQEESVAVLVRAIPGATTAVSSLVEADRGSGVGKKSKRPYNRSAKGGATSPTNADGKRSRAENSRTPTTENRAEKAAKLGVRPGAAGAXXXXXXXXXXXXXXXXXXXXXXTAETFEVDYLGGFRPDDQRLLVLLQKYVFVNSQAGKEACSEMEAEGRGARRRALDRLEAAAVVVQACMARGCSGRALAREASGRRELDRHNTRLNWAASLLQTRWMKTHSKTRPGVARFTLRTLFVKIYCMQEQMRAFAARTRAAKMAVKRYYRCLDGLTGAEYYFDPKTGKSSWAKPKILGKFDISTAVVVPAGEEIMVPMCHECAE---------------------------EVATDFQVAVKHCQQC------------GDNFCVSCFAYLHRKGRIRRHTFEPLVGICHDCGDRAQVQQ 475
BLAST of mRNA_Ecto-sp13_S_contig118.1550.1 vs. uniprot
Match: A0A7S3GX72_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GX72_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 3.350e-8 Identity = 34/85 (40.00%), Postives = 49/85 (57.65%), Query Frame = 1
Query: 1810 RLNWAASLLQKRMRAFAARTRTAKMAVKRYYRCLDGLTGAEYYFDPKTGKSSWTKPKILGKFDISTAVVVPAGEEIMVPMCHECA 2064
R N AA +Q +R F R + +MA Y + +DG T EY+ +P+T S WTKP +LG+FD A +P+ EE +C +CA
Sbjct: 113 RRNNAAKAMQGLIRGFLGRRQIKRMAQAMYTKFIDGATEREYWCNPRTNVSHWTKPALLGEFDCGMATRMPSEEERFTVVCGQCA 197
BLAST of mRNA_Ecto-sp13_S_contig118.1550.1 vs. uniprot
Match: A0A7S3PQJ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PQJ7_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 1.130e-6 Identity = 40/161 (24.84%), Postives = 62/161 (38.51%), Query Frame = 1
Query: 1933 YYFDPKTGKSSWTKPKILGKFDISTAVVVPAGEEIMVPMCHECAXXXXXXXXXXXXXXXXXXXXVNRIHRTGNASTHLRVPIEXXXXXXXXXXXXXXXXX-GDNFCVSCFSYLHRKGRIRRHTFEPLV-GMCHDCGDRAQAFQCFGCDAEGRLLLCKRCLE 2409
Y+F+PKTG++SW KP +L ++ T V +P +V C C+ + H G +TH+ V I+ D+FC +CF H G H+ + LV +C C RA + + C C+E
Sbjct: 6 YWFNPKTGRTSWEKPHVLQDAEVDTVVHIPPERHQLVKYCERCSEKLIKVFCDDCEEYTCRDCF-DSFHTKGKRATHISVSIKTCIHCQFQLATRSCEDCKSDSFCDTCFMKTHESGTWVNHSCKLLVKNICQICESRASTH------SVSESICCSFCVE 159
BLAST of mRNA_Ecto-sp13_S_contig118.1550.1 vs. uniprot
Match: A0A482UT58_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UT58_9ARCH) HSP 1 Score: 62.8 bits (151), Expect = 6.040e-6 Identity = 58/172 (33.72%), Postives = 79/172 (45.93%), Query Frame = 1
Query: 1834 LQKRMRAFAARTRTAKMAVKRYYRCLDGLTGAEYYFDPKTGKSSWTKPKILGKFDISTAVVVPAGEEIMVPMCHECAXXXXXXXXXXXXXXXXXXXXVNRIHRTGNASTHLRVPIEXXXXXXXXXXXXXXXXXGDNFCVSCFSYLHRKGRIRRHTFEPLVGMCHDCGDRAQA 2349
+Q+ R + R K++ Y + LDG + EY+F+P+T S WTKP++LG D AV +P +E C C + IHRTG TH + ++ XXXXXXXXXXXXXXXX +R H +E C DC +R A
Sbjct: 682 IQRICRGYLGRRFIRKISQHLYSKYLDGESEREYWFNPRTQTSYWTKPRLLGDLDCGPAVRMPTPDEAFTIFCTNCEKNHATCYCQQCNGPYCTPCYAS-IHRTGTRKTHQHLLVDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRYHAYERYAARC-DCCERRSA 851
BLAST of mRNA_Ecto-sp13_S_contig118.1550.1 vs. uniprot
Match: A0A7S0GT93_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GT93_9EUKA) HSP 1 Score: 60.1 bits (144), Expect = 8.360e-6 Identity = 28/73 (38.36%), Postives = 44/73 (60.27%), Query Frame = 1
Query: 934 LELHRTFMKYCRFGDRRNTGRMVVAKLAALCKDAGIIDKRFPVQRVEISFSRLKPKDLSHLPYSSFLAALDDI 1152
L L FMK+C+FGD NTG+M AK KD GI+DK+ V++ FS++K K + +++F ++ D+
Sbjct: 136 LTLKTVFMKFCKFGDPTNTGKMTGAKYFKFTKDCGIVDKKLTRTSVDLLFSKIKVKGQRTINFATFKKSMMDL 208
BLAST of mRNA_Ecto-sp13_S_contig118.1550.1 vs. uniprot
Match: A0A7S3XSU1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSU1_HETAK) HSP 1 Score: 54.3 bits (129), Expect = 8.810e-5 Identity = 30/71 (42.25%), Postives = 41/71 (57.75%), Query Frame = 1
Query: 1822 AASLLQKRMRAFAARTRTAKMAVKRYYRCLDGLTGAEYYFDPKTGKSSWTKPKILGKFDISTAVVVPAGEE 2034
AA L+Q R AAR K+A Y + D + A +YF+ +TGKSSW KP +LG +D+ PAG+E
Sbjct: 68 AARLIQGLFRRIAARREVVKLAGLLYQKVFDDGSQAYFYFNTRTGKSSWEKPLLLGGYDLD-----PAGDE 133 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig118.1550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig118.1550.1 >prot_Ecto-sp13_S_contig118.1550.1 ID=prot_Ecto-sp13_S_contig118.1550.1|Name=mRNA_Ecto-sp13_S_contig118.1550.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1551bp RRYKHLLGVRATTIQRAYRRRLLRLKPGAYGKAVQAAAGKSAPAIFSSLLback to top mRNA from alignment at Ecto-sp13_S_contig118:19999..38460+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig118.1550.1 ID=mRNA_Ecto-sp13_S_contig118.1550.1|Name=mRNA_Ecto-sp13_S_contig118.1550.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=18462bp|location=Sequence derived from alignment at Ecto-sp13_S_contig118:19999..38460+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig118:19999..38460+ >mRNA_Ecto-sp13_S_contig118.1550.1 ID=mRNA_Ecto-sp13_S_contig118.1550.1|Name=mRNA_Ecto-sp13_S_contig118.1550.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=4653bp|location=Sequence derived from alignment at Ecto-sp13_S_contig118:19999..38460+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |