mRNA_Ecto-sp13_S_contig118.1549.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig118.1549.1
Unique NamemRNA_Ecto-sp13_S_contig118.1549.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig118.1549.1 vs. uniprot
Match: D8LT39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT39_ECTSI)

HSP 1 Score: 324 bits (830), Expect = 2.780e-110
Identity = 179/191 (93.72%), Postives = 185/191 (96.86%), Query Frame = 1 
Query:    1 MGMTAKTLPLSYLKGIGYLREAQRRGLEKTTKIMKRVATIAKLRAWQKWRQVGVPKRSAGKKATTTGNILCAAVTRGYLARRRVAMLRRERAKAAAQRSEVKRSLLQRRLVKVSAASRIVASCLIANASDRRRERRRLVRAAVAMVERIYIARKAREQGWREIVLYRKEHAAAGMIQRWTRGVLVRRRTPL 573
            MGMTA+TLPLSYLK IGYL EAQRRGLEKTT I+KRVATIAKLRAWQKWRQ+GVPKRSAGKKATTTGNILCAAVTRGYLARRRVAM+RRERAKAAAQR+E+KRSLLQRRLVKVSAASRIVASCLIANA  RRRERRRLVRAAVAMVER YIARKAREQGWREIVLYRKEHAAAGMIQRWTRGVLVRRRTPL
Sbjct:    1 MGMTARTLPLSYLKDIGYLGEAQRRGLEKTTNIVKRVATIAKLRAWQKWRQLGVPKRSAGKKATTTGNILCAAVTRGYLARRRVAMIRRERAKAAAQRAELKRSLLQRRLVKVSAASRIVASCLIANAWARRRERRRLVRAAVAMVERNYIARKAREQGWREIVLYRKEHAAAGMIQRWTRGVLVRRRTPL 191
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig118.1549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT39_ECTSI2.780e-11093.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig118contigEcto-sp13_S_contig118:17155..19313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size686
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_004040.1
Cds size684
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462622.1068518-CDS-Ecto-sp13_S_contig118:17154..172971681462622.1068518-CDS-Ecto-sp13_S_contig118:17154..17297Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig118 17155..17297 +
1681462622.1167035-CDS-Ecto-sp13_S_contig118:17678..179701681462622.1167035-CDS-Ecto-sp13_S_contig118:17678..17970Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig118 17679..17970 +
1681462622.126041-CDS-Ecto-sp13_S_contig118:18426..185641681462622.126041-CDS-Ecto-sp13_S_contig118:18426..18564Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig118 18427..18564 +
1681462622.1351624-CDS-Ecto-sp13_S_contig118:19202..193131681462622.1351624-CDS-Ecto-sp13_S_contig118:19202..19313Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig118 19203..19313 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig118.1549.1prot_Ecto-sp13_S_contig118.1549.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig118 17155..19313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig118.1549.1

>prot_Ecto-sp13_S_contig118.1549.1 ID=prot_Ecto-sp13_S_contig118.1549.1|Name=mRNA_Ecto-sp13_S_contig118.1549.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=228bp
MGMTAKTLPLSYLKGIGYLREAQRRGLEKTTKIMKRVATIAKLRAWQKWR
QVGVPKRSAGKKATTTGNILCAAVTRGYLARRRVAMLRRERAKAAAQRSE
VKRSLLQRRLVKVSAASRIVASCLIANASDRRRERRRLVRAAVAMVERIY
IARKAREQGWREIVLYRKEHAAAGMIQRWTRGVLVRRRTPLDRRIRRMEL
NDARFALRAEVFVAHLVDHGAAVVIQKW
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mRNA from alignment at Ecto-sp13_S_contig118:17155..19313+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig118.1549.1 ID=mRNA_Ecto-sp13_S_contig118.1549.1|Name=mRNA_Ecto-sp13_S_contig118.1549.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig118:17155..19313+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGATGACCGCGAAAACATTGCCACTGAGTTACCTGAAAGGCATTGG
GTATCTGAGAGAGGCGCAGAGAAGAGGGTTGGAAAAGACGACCAAGATTA
TGAAGAGGGTCGCCACGATCGCCAAGCTTCGGGCATGGCAGAAGTAAGCG
GGAACGAGATTGCTTTGTCTGCTTTGACTTCGCCTGGTGTGCTCTTTCGC
GGTCGGCAGGTTTGATACCCGGCAGAGACAATGGTTTACTGATTCGGATG
GGAGTCTTGGGTTGATGACCAACCTTCATGATGGCAATTGGATATTTAAT
TACGGCTGCATTGCTGCTTTGATGACGTTGCTGGGTCGACCGAATATCGT
CTTTCGTCACCTCCCCGATCGGACTCAAGTTCCAGCTGCCAGAACAGACT
CGAAGAGAGATTTTGGCGCGAGTGAATCAAAGCGACGAAACTCGACCTAT
CAGGCGTACTCCCTGTGGTTTACCTGCCTTACTTCGGATTTTTGAACCTT
CGACATTCATTCATTTATTGACAGGTGGCGGCAAGTGGGAGTCCCCAAAC
GTTCCGCAGGAAAGAAGGCCACCACCACCGGCAACATCCTCTGCGCCGCC
GTCACCCGGGGATATCTTGCGAGAAGGCGCGTCGCCATGCTCCGTAGAGA
AAGAGCCAAGGCAGCCGCGCAACGGTCAGAGGTCAAGCGGTCTCTGCTAC
AGCGCCGTCTTGTGAAGGTGTCGGCGGCGTCACGGATTGTCGCCTCGTGC
TTGATCGCCAACGCCTCGGATCGCAGGCGGGAGAGACGTCGGTTGGTTCG
AGCAGCGGTGGCCATGGTGAGTAGGGGAAGAGTACGGAACGCTTGCATCT
GGGAGAAATTGAGGCTGGTTATTATGTTGTGGTCTTTTGTCTTTAAGGAG
TGGGTGGGTGTTAAGGTCGAAAAGGCCAGAGCGCGACCCAGTGACACACG
TCTCGTCAAAACCTAGGGTAGGAAGTAGTTGCTGGAAATTTCGACCGAGG
GGACGATTCGTGGCAAGCTGATAGCGGGAGGGGTTTGTTGCGCCGCTTCG
ACACGACGGGCCCAGCGTCATACACGGTCATTCGGCTTGTATCGACTTGA
CCACAGAAGCGAGAGGGGGGGGGCGGGGCACGCTGAGTGTTTCAGAGCCC
AACACGAGGTTGCGCCCAAAATATCGCCGATTGGCGAACCAAAGAACCCC
CGACGTCGTCGGATTGTCACTCGTGTTGCTTCGACTTATCCCGAACTGAC
ATCGATGTAATTGTCGTGTCAGGTGGAGCGTATCTATATCGCTCGCAAGG
CCAGGGAGCAAGGGTGGCGAGAGATCGTGCTTTACCGCAAGGAGCATGCC
GCGGCGGGTATGATTCAGCGCTGGACGCGCGGGGTGCTTGTGAGGCGCCG
TACTCCCCTGGTGAGCGCGGGAATACTGAAGCTTGAGTGTGCCGGTGAAT
TCTCGGTGGACGGTTGCTGGGGTTATTTGGGTTACCTTGTTGCCGTTGCT
GCTTTCCTGCTTTCGTCCAAGTGCGGTGTGTGGGAGGGATGAATGTGTCA
CGTTCTAAATGTTTTTCCGAGCCAAAGCTACATTATGGCGCACAGACTTA
GGTGGCCAGAGGTCGTGGAACTCCCTAGGAAAGAAAGGTGAGACTTGAAC
ACTGGGGAGCCACGAGGGGAGGTCAACAGGGAGCTAAGTGGCAGATAATG
TACTCCCAGCAGTGGTCAGCCCTGCGACGTGACGCCTCGTGCCGCCACTT
GCTGCCTTGCGGCCTCTGCTGTTGACTGTTGTTCTGCGACGTGTAAAACG
TGCACTGAGACGGGTTTGGAGATATCAAGCGGAGTCAAGGGGAGTCACAT
TAAAGCACACCGCCCGGTAAAAACGACTTATCCCGGTGCACTACAAGGCG
GGAGGTGGATTCGTGCTTGTTGACAATCCTGAATCCGGTTGCACACTTCG
CCGGATTGACAGCAAATGATCCCCAACCACCATCCGCCTGCCCTCGACTG
CAACCACGCGCACCCCCGACGGTCCATGCGCGGTGCCGATGCGGGCAGGA
TCGACGGATCCGTAGGATGGAGCTGAACGACGCCCGGTTCGCGTTACGGG
CAGAGGTGTTCGTGGCCCATCTGGTCGATCATGGGGCCGCCGTTGTGATC
CAGAAGTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig118:17155..19313+

>mRNA_Ecto-sp13_S_contig118.1549.1 ID=mRNA_Ecto-sp13_S_contig118.1549.1|Name=mRNA_Ecto-sp13_S_contig118.1549.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=684bp|location=Sequence derived from alignment at Ecto-sp13_S_contig118:17155..19313+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGATGACCGCGAAAACATTGCCACTGAGTTACCTGAAAGGCATTGG
GTATCTGAGAGAGGCGCAGAGAAGAGGGTTGGAAAAGACGACCAAGATTA
TGAAGAGGGTCGCCACGATCGCCAAGCTTCGGGCATGGCAGAAGTGGCGG
CAAGTGGGAGTCCCCAAACGTTCCGCAGGAAAGAAGGCCACCACCACCGG
CAACATCCTCTGCGCCGCCGTCACCCGGGGATATCTTGCGAGAAGGCGCG
TCGCCATGCTCCGTAGAGAAAGAGCCAAGGCAGCCGCGCAACGGTCAGAG
GTCAAGCGGTCTCTGCTACAGCGCCGTCTTGTGAAGGTGTCGGCGGCGTC
ACGGATTGTCGCCTCGTGCTTGATCGCCAACGCCTCGGATCGCAGGCGGG
AGAGACGTCGGTTGGTTCGAGCAGCGGTGGCCATGGTGGAGCGTATCTAT
ATCGCTCGCAAGGCCAGGGAGCAAGGGTGGCGAGAGATCGTGCTTTACCG
CAAGGAGCATGCCGCGGCGGGTATGATTCAGCGCTGGACGCGCGGGGTGC
TTGTGAGGCGCCGTACTCCCCTGGATCGACGGATCCGTAGGATGGAGCTG
AACGACGCCCGGTTCGCGTTACGGGCAGAGGTGTTCGTGGCCCATCTGGT
CGATCATGGGGCCGCCGTTGTGATCCAGAAGTGG
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