mRNA_Ecto-sp13_S_contig1179.1537.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1179.1537.1
Unique NamemRNA_Ecto-sp13_S_contig1179.1537.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1179.1537.1 vs. uniprot
Match: A0A6H5L533_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L533_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 1.170e-87
Identity = 125/137 (91.24%), Postives = 130/137 (94.89%), Query Frame = 2 
Query:   41 MCQVPCARPPPHPKQQQARMPVTMAAARQCVSKPISIAIGAGAGCQKIAGEQEVGRTSSTTTTGTGQQHVTSKDAPSKIVRRAHCRRIAPENQYHPHVCNNCGQTFIPQGLGKDFCGGECRHSFAWMRHMEKRRFAQ 451
            MCQVPCARPPPHPKQQQ R+P+TMAAARQCVSKPI+IAIGAGAGCQKIA EQ  GRTSSTTTTGTGQQH TSK APSK+VRRAHCRRIAPENQYHPHVCNNCGQTFIPQG G+DFCGGECRHSFAWMRHMEKRRFAQ
Sbjct:    1 MCQVPCARPPPHPKQQQTRVPITMAAARQCVSKPINIAIGAGAGCQKIAEEQATGRTSSTTTTGTGQQHATSKAAPSKVVRRAHCRRIAPENQYHPHVCNNCGQTFIPQGPGRDFCGGECRHSFAWMRHMEKRRFAQ 137
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1179.1537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L533_9PHAE1.170e-8791.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1179contigEcto-sp13_S_contig1179:16043..17703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size644
Hectar predicted targeting categoryother localisation
Exons2
Cds size567
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462621.1843631-UTR-Ecto-sp13_S_contig1179:16042..161171681462621.1843631-UTR-Ecto-sp13_S_contig1179:16042..16117Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1179 16043..16117 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462621.1928957-CDS-Ecto-sp13_S_contig1179:16117..161201681462621.1928957-CDS-Ecto-sp13_S_contig1179:16117..16120Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1179 16118..16120 -
1681462621.2009685-CDS-Ecto-sp13_S_contig1179:17139..177031681462621.2009685-CDS-Ecto-sp13_S_contig1179:17139..17703Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1179 17140..17703 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1179.1537.1prot_Ecto-sp13_S_contig1179.1537.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1179 16118..17703 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1179.1537.1

>prot_Ecto-sp13_S_contig1179.1537.1 ID=prot_Ecto-sp13_S_contig1179.1537.1|Name=mRNA_Ecto-sp13_S_contig1179.1537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=189bp
PLHHIPPTFVTKDHVPSTLRQAPAPPEAAAGENAGHDGCGEAVCEQAHQH
RHRSGSRVPKDRRGARSGADLLYNNDRDGAATCDFQGRAKQDRPARALPA
YRPREPVPPARLQQLRADVHSPGARQGLLRGRVPTQLRVDEAHGEEKICT
AAAPEATAAAATTTTTTATTTTAAATLTTHIFFALRRE*
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mRNA from alignment at Ecto-sp13_S_contig1179:16043..17703-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1179.1537.1 ID=mRNA_Ecto-sp13_S_contig1179.1537.1|Name=mRNA_Ecto-sp13_S_contig1179.1537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1661bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1179:16043..17703- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCTTCACCACATCCCCCCTACCTTCGTCACCAAAGACCATGTGCCAAG
TACCTTGCGCCAGGCCCCCGCCCCACCCGAAGCAGCAGCAGGCGAGAATG
CCGGTCACGATGGCTGCGGCGAGGCAGTGTGTGAGCAAGCCCATCAGCAT
CGCCATCGGAGCGGGAGCAGGGTGCCAAAAGATCGCCGGGGAGCAAGAAG
TGGGGCGGACCTCCTCTACAACAACGACCGGGACGGGGCAGCAACATGTG
ACTTCCAAGGACGCGCCAAGCAAGATCGTCCGGCGCGCGCACTGCCGGCG
TATCGCCCCCGAGAACCAGTACCACCCGCACGTCTGCAACAACTGCGGGC
AGACGTTCATTCCCCAGGGGCTCGGCAAGGACTTCTGCGGGGGCGAGTGC
CGACACAGCTTCGCGTGGATGAGGCACATGGAGAAGAGAAGATTTGCACA
GCAGCAGCTCCGGAGGCAACAGCAGCAGCAGCAACAACAACAACAACTAC
AGCAACAACAACAACAGCAGCAGCAACGCTGACGACGCACATCTTCTTCG
CCTTGCGGCGCGAGGTAGCAGCTTTTGTGTTTGTTTCATGGCTTGACGTG
TGAGTTGCTTGCCTGCTCTATTCCTCGTTTGTCTTCCCCCGAAGTTCGAC
ACGGGTTGGCCGCCGCTTTCCGATCATGAAAGAGATAAAAGTGGGTGTAC
CGTATTGGTTGGTTGATTGTGTCCAGCAAGCATGATCTGTTGCCGTTTTT
GTTTCAAGGCCAACAACAAAACGCCACCCCCTTCCCCTGCGCATTATTCC
AGGGATGTTTGTGGGCGACGTGGGGGTAGTAGGAAGCCCCGCCTCGCTTG
ACTGCTGTGTTTTGTTTGGGGCAAAAAAAGTTGCGCCGGGGGGGGGCGGA
ATTGTTATATCGAGATTTCGCTCTATTCTCGCATATATTTTGGGGTTGGT
ACAGTAGTTGACGTTCGTTGCAGCCGGACACATTTCGTTTCATACAAAAA
ACGCATGCATGCACACGTTGGGGAGCTTGTTTTTCCCTCCGGCTCCTCGT
GGTGCTGCTACTGCTGCGTTTGGGTTCCGCGCTGTTGTTGATGCCCGATC
GTACCCATCCGTGTCACGTATGTATCGCGTGGTATATTGCGCGATCTACT
TTGTTCTCTGTTCCTTTCGTTGTTTTTTGTTGTCCCACAAAAAATTGTGT
TGTGTCGCATACGTCGACAGCAGCAGTGATACGAGAGTTCCGTTGTGTGC
TATTTGCCAGGACTCTCTCCCCAGATGATGATGCATACGTGTGCATATCA
CTCCGTGTTGGCAGAGTTTTATAGTTGTATTCGTGTGCATAGCATACGAT
GCCACCGTCGTTCGTCGTTGTTGCAGAGAAGGTCGGTGTTACAACGAAAG
TCTGTACGTAGCGTCACGCAGCCCGCGTTTTCTCGAGTTATTTTTGTCTA
AAATAACCGCGTGCGAAGAGGTACATACAAACATCTGTGCAGCGAGTTTT
TTTCACATCTCTGCACCATGTATCCACACACCGATAATTTTCTGTCTCTC
CCCCCCCTTCCCGAATGCGAAATCCCGCTACAGTAAGAGTGATATGGGCG
GGAATGAATGGATGATGACTGCTCGTGTCGGTAAGCGCGCCAAACGTAGA
ATCAATCAAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1179:16043..17703-

>mRNA_Ecto-sp13_S_contig1179.1537.1 ID=mRNA_Ecto-sp13_S_contig1179.1537.1|Name=mRNA_Ecto-sp13_S_contig1179.1537.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=567bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1179:16043..17703- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCTTCACCACATCCCCCCTACCTTCGTCACCAAAGACCATGTGCCAAG
TACCTTGCGCCAGGCCCCCGCCCCACCCGAAGCAGCAGCAGGCGAGAATG
CCGGTCACGATGGCTGCGGCGAGGCAGTGTGTGAGCAAGCCCATCAGCAT
CGCCATCGGAGCGGGAGCAGGGTGCCAAAAGATCGCCGGGGAGCAAGAAG
TGGGGCGGACCTCCTCTACAACAACGACCGGGACGGGGCAGCAACATGTG
ACTTCCAAGGACGCGCCAAGCAAGATCGTCCGGCGCGCGCACTGCCGGCG
TATCGCCCCCGAGAACCAGTACCACCCGCACGTCTGCAACAACTGCGGGC
AGACGTTCATTCCCCAGGGGCTCGGCAAGGACTTCTGCGGGGGCGAGTGC
CGACACAGCTTCGCGTGGATGAGGCACATGGAGAAGAGAAGATTTGCACA
GCAGCAGCTCCGGAGGCAACAGCAGCAGCAGCAACAACAACAACAACTAC
AGCAACAACAACAACAGCAGCAGCAACGCTGACGACGCACATCTTCTTCG
CCTTGCGGCGCGAGTAA
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