mRNA_Ecto-sp13_S_contig11789.1536.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11789.1536.1
Unique NamemRNA_Ecto-sp13_S_contig11789.1536.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11789.1536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11789contigEcto-sp13_S_contig11789:1806..3078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size327
Hectar predicted targeting categoryother localisation
Exons3
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462621.1347175-CDS-Ecto-sp13_S_contig11789:1807..18961681462621.1347175-CDS-Ecto-sp13_S_contig11789:1807..1896Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11789 1808..1896 -
1681462621.144994-CDS-Ecto-sp13_S_contig11789:2162..23701681462621.144994-CDS-Ecto-sp13_S_contig11789:2162..2370Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11789 2163..2370 -
1681462621.154586-CDS-Ecto-sp13_S_contig11789:3051..30781681462621.154586-CDS-Ecto-sp13_S_contig11789:3051..3078Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11789 3052..3078 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11789.1536.1prot_Ecto-sp13_S_contig11789.1536.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11789 1808..3078 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11789.1536.1

>prot_Ecto-sp13_S_contig11789.1536.1 ID=prot_Ecto-sp13_S_contig11789.1536.1|Name=mRNA_Ecto-sp13_S_contig11789.1536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
FSQGREEEEKPGDLRPGLFLRVGGAGMSYHGLRAGTRFLLPPREVLFSTP
VCRGRSPAGSGLEEQSDGRERQQHLIGRGEAGGGGGGGGGAAATGATGEQ
QYRRRTGR
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mRNA from alignment at Ecto-sp13_S_contig11789:1806..3078-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11789.1536.1 ID=mRNA_Ecto-sp13_S_contig11789.1536.1|Name=mRNA_Ecto-sp13_S_contig11789.1536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11789:1806..3078- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCAGCCAGGGCAGGGAAGAAGAAGAGGTACGCTGTCGGTGTTTCGGTCA
CCATCAGGCAACAACCAATGGTTCCGGGGATGCGGAGAGATCTCACGTGC
GAAACGGCGCCGCGGTTTCGCGTGTGACTGCCGTGTGGCTTTTTAACCAC
AGGCAGCAGCAGCGGCAGCAGTACTTACAACTCTCCAGTTGTTGGCTGGT
GTCGTTCATTTTTTCTGTTTCGTTTCGCGTTCGCCAAGAGACCAAGCTGA
GGTGTCAAGGCAGACGCGTACCTCAGCTTTTGCCCCGTCTTGTTCGAGCG
CGTGTCTCGTTCATGTTGTGCCTTTCTCTGCAGCCTGGCATGCCCTTGTC
CTATAGGTGTGGACTGACAATCCTGGGTGACATGGCACTCCTGGACCCCC
GCGCCTGTGAAAACGATGTCCATCGAGCAGCGCCGTAGTTAAAGGGGGCC
AACCTAACTCGTGTAGGCGGCGATCGGTCTTGCGCGTGTAATAAAGGAGA
TCGAACGACTAGGAGTGAGAGGCGATAGGCAGCAAGCGGGCCCGTTTTCG
TGAGAAGATCAAAATCATTTGCAAGGCGTGCCATCTTGCTCCGTGGCAGA
CTTCTAGCCCCCTCCCCCCCTCCCCCCCAATGTCACCGGTCCAACCGCTG
AGGCGTGCAAATCGTGATCATGCTCCCCTCCTCCTCCTCCACGGGCCTGG
TGGGAAAGAAACCCGGTGATCTCCGTCCTGGCCTTTTTTTACGAGTGGGT
GGGGCTGGTATGAGTTACCACGGCCTTCGCGCCGGAACGAGATTCCTCCT
GCCTCCCCGAGAAGTCCTGTTTAGTACTCCTGTGTGCCGTGGGCGTTCCC
CCGCGGGGAGTGGGCTGGAAGAGCAAAGCGACGGGCGTGAGAGACAGCAA
CACCTGATTGGTCGAGGCGAGCTCTCGTCGTTGGCGCTGGCCGCTCTTGC
GGCTCATCTCGTCCTCGGACTGAAATAGGGAACTCTCATGTTTTTTCCCG
ACATCCATCGCCGTTCGGGATACGCACAAACGCTAGGCGTAAGTTTGGTT
GTGTGGGGTCCTGTTTGTTGACGAGTACGCAAGAAGCAACATTTGCCGAA
GCAACCAGCTTCTTTTTTTCAGGAATCCAGCTGGCAGACCGTTCTTTTCT
TTCCTTTTTCACCAATCCAAATGGATCGGCAGGCGAGGCAGGCGGCGGCG
GCGGCGGCGGCGGCGGAGCAGCGGCAACAGGAGCAACAGGCGAACAGCAG
TATCGACGACGTACTGGGCGCAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11789:1806..3078-

>mRNA_Ecto-sp13_S_contig11789.1536.1 ID=mRNA_Ecto-sp13_S_contig11789.1536.1|Name=mRNA_Ecto-sp13_S_contig11789.1536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11789:1806..3078- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCAGCCAGGGCAGGGAAGAAGAAGAGAAACCCGGTGATCTCCGTCCTGG
CCTTTTTTTACGAGTGGGTGGGGCTGGTATGAGTTACCACGGCCTTCGCG
CCGGAACGAGATTCCTCCTGCCTCCCCGAGAAGTCCTGTTTAGTACTCCT
GTGTGCCGTGGGCGTTCCCCCGCGGGGAGTGGGCTGGAAGAGCAAAGCGA
CGGGCGTGAGAGACAGCAACACCTGATTGGTCGAGGCGAGGCAGGCGGCG
GCGGCGGCGGCGGCGGCGGAGCAGCGGCAACAGGAGCAACAGGCGAACAG
CAGTATCGACGACGTACTGGGCGC
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