mRNA_Ecto-sp13_S_contig11782.1529.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11782.1529.1 vs. uniprot
Match: D8LHA4_ECTSI (Similar to canalicular multispecific organic anion transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA4_ECTSI) HSP 1 Score: 244 bits (622), Expect = 1.880e-72 Identity = 121/124 (97.58%), Postives = 123/124 (99.19%), Query Frame = 1
Query: 1 RDVDARHRPDLPPVLNGVTLSVKCGERVGICGRSGSGKSSLALALVRVVECCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDPLGQCSDARIWEIIDMVGLRDAVVDLPLGL 372
RDVDARHRPDLP VLNGVTLSVKCGERVGICGRSGSGKSSLALALVRVVECCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDP+GQCSDARIWEII+MVGLRDAVVDLPLGL
Sbjct: 1095 RDVDARHRPDLPLVLNGVTLSVKCGERVGICGRSGSGKSSLALALVRVVECCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDPVGQCSDARIWEIIEMVGLRDAVVDLPLGL 1218
BLAST of mRNA_Ecto-sp13_S_contig11782.1529.1 vs. uniprot
Match: A0A6H5JWW8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW8_9PHAE) HSP 1 Score: 238 bits (608), Expect = 1.330e-70 Identity = 119/124 (95.97%), Postives = 121/124 (97.58%), Query Frame = 1
Query: 1 RDVDARHRPDLPPVLNGVTLSVKCGERVGICGRSGSGKSSLALALVRVVECCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDPLGQCSDARIWEIIDMVGLRDAVVDLPLGL 372
RDV ARHRPDL PVLNGVTLSVKCGE VGICGRSGSGKSSLALALVR+VECCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDPLGQCSDARIWEII+MVGLRDAVVDLPLGL
Sbjct: 1014 RDVYARHRPDLLPVLNGVTLSVKCGELVGICGRSGSGKSSLALALVRIVECCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDPLGQCSDARIWEIIEMVGLRDAVVDLPLGL 1137
BLAST of mRNA_Ecto-sp13_S_contig11782.1529.1 vs. uniprot
Match: A0A7S3XQF6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQF6_HETAK) HSP 1 Score: 132 bits (332), Expect = 2.310e-33 Identity = 61/124 (49.19%), Postives = 88/124 (70.97%), Query Frame = 1
Query: 1 RDVDARHRPDLPPVLNGVTLSVKCGERVGICGRSGSGKSSLALALVRVVECCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDPLGQCSDARIWEIIDMVGLRDAVVDLPLGL 372
RDV ARHRP LP VL V L V GE +G+CGR+G GKS+L ALVR++E G + +DG DI +PL LRS +TVI QDAH+FSG +RE +DP+G ++ +W++++ + ++D ++ +P GL
Sbjct: 586 RDVRARHRPGLPLVLRDVALEVGPGELLGVCGRTGCGKSTLVAALVRMLEVESGKILIDGIDIGSVPLKKLRSKITVIPQDAHIFSGTLREVLDPVGAFPESALWDVLEQLEMKDTILSMPKGL 709
BLAST of mRNA_Ecto-sp13_S_contig11782.1529.1 vs. uniprot
Match: A0A8J5TN04_HOMAM (Canalicular multispecific organic anion transporter 2-like 2 n=1 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5TN04_HOMAM) HSP 1 Score: 127 bits (320), Expect = 9.830e-32 Identity = 60/124 (48.39%), Postives = 86/124 (69.35%), Query Frame = 1
Query: 1 RDVDARHRPDLPPVLNGVTLSVKCGERVGICGRSGSGKSSLALALVRVVECCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDPLGQCSDARIWEIIDMVGLRDAVVDLPLGL 372
RDV H P L PVL G+ ++K GE+VG+CGR+GSGKSSL L+L R+VE G + +DG +I+ +PL+LLR ++VI QD HLF G +R +DPLGQ D +W+ +++ L+ V ++P GL
Sbjct: 817 RDVTLTHDPSLDPVLTGLNFTIKPGEKVGLCGRTGSGKSSLILSLYRLVEARHGTIQVDGTNIQHVPLSLLRGSISVIPQDTHLFCGTLRFNLDPLGQRPDDHLWKALEVAQLQSLVSEMPEGL 940
BLAST of mRNA_Ecto-sp13_S_contig11782.1529.1 vs. uniprot
Match: UPI001C45249E (ATP-binding cassette sub-family C member 9-like isoform X1 n=2 Tax=Homarus americanus TaxID=6706 RepID=UPI001C45249E) HSP 1 Score: 127 bits (320), Expect = 1.010e-31 Identity = 60/124 (48.39%), Postives = 86/124 (69.35%), Query Frame = 1
Query: 1 RDVDARHRPDLPPVLNGVTLSVKCGERVGICGRSGSGKSSLALALVRVVECCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDPLGQCSDARIWEIIDMVGLRDAVVDLPLGL 372
RDV H P L PVL G+ ++K GE+VG+CGR+GSGKSSL L+L R+VE G + +DG +I+ +PL+LLR ++VI QD HLF G +R +DPLGQ D +W+ +++ L+ V ++P GL
Sbjct: 1729 RDVTLTHDPSLDPVLTGLNFTIKPGEKVGLCGRTGSGKSSLILSLYRLVEARHGTIQVDGTNIQHVPLSLLRGSISVIPQDTHLFCGTLRFNLDPLGQRPDDHLWKALEVAQLQSLVSEMPEGL 1852
BLAST of mRNA_Ecto-sp13_S_contig11782.1529.1 vs. uniprot
Match: A0A7S1FHG0_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FHG0_NOCSC) HSP 1 Score: 121 bits (303), Expect = 1.130e-31 Identity = 60/124 (48.39%), Postives = 83/124 (66.94%), Query Frame = 1
Query: 1 RDVDARHRPDLPPVLNGVTLSVKCGERVGICGRSGSGKSSLALALVRVVECCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDPLGQCSDARIWEIIDMVGLRDAVVDLPLGL 372
RDV+ R++P LP VLNG+TLSV G R+G+CGR+GSGKS+L LA R++E RG + +DG DI +PL +RS + ++ QD +FSG VR +D G +D R+WE + + L D V L GL
Sbjct: 15 RDVELRYQPHLPTVLNGLTLSVAPGTRLGVCGRTGSGKSTLFLASFRMMETTRGAILVDGVDISTVPLLAIRSRLAIVPQDPLMFSGTVRSNLDFHGTHTDQRLWEALRLAHLEDQVQSLQRGL 138
BLAST of mRNA_Ecto-sp13_S_contig11782.1529.1 vs. uniprot
Match: C1MQY8_MICPC (ATP-binding cassette superfamily n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MQY8_MICPC) HSP 1 Score: 127 bits (319), Expect = 1.360e-31 Identity = 64/123 (52.03%), Postives = 86/123 (69.92%), Query Frame = 1
Query: 4 DVDARHRPDLPPVLNGVTLSVKCGERVGICGRSGSGKSSLALALVRVVECCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDPLGQCSDARIWEIIDMVGLRDAVVDLPLGL 372
++ R+RP LP VLNGV+ +V+ GE+VGICGR+GSGKSSL +AL R+VE C G ++LDG D+ +PL LRS VT I QD LFSG VR+ +DP +DA +W ++ V L+ AV + GL
Sbjct: 1050 NLQLRYRPGLPLVLNGVSFNVQAGEKVGICGRTGSGKSSLIVALWRLVEPCGGAIWLDGVDVSTIPLKTLRSAVTCIPQDPILFSGTVRDNLDPFKNHADAELWFALEAVQLKKAVSETGEGL 1172
BLAST of mRNA_Ecto-sp13_S_contig11782.1529.1 vs. uniprot
Match: A0A8J2R617_9NEOP ((African queen) hypothetical protein n=1 Tax=Danaus chrysippus TaxID=151541 RepID=A0A8J2R617_9NEOP) HSP 1 Score: 125 bits (313), Expect = 1.460e-31 Identity = 60/123 (48.78%), Postives = 81/123 (65.85%), Query Frame = 1
Query: 4 DVDARHRPDLPPVLNGVTLSVKCGERVGICGRSGSGKSSLALALVRVVECCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDPLGQCSDARIWEIIDMVGLRDAVVDLPLGL 372
DV +H+P+ PPVL + L++K G++V ICGRSGSGKS+L L + C G V LDG+D+ ++PL LR V V+ Q+A LFSG +RE +DPLG +D IWE + VGL D + P GL
Sbjct: 199 DVSVQHQPNRPPVLKNINLTIKPGQKVAICGRSGSGKSTLLLTCAGATKICGGRVLLDGRDVTKVPLRALRHRVVVLPQEAILFSGTLRENLDPLGMHTDEEIWESLKAVGLYDYISAQPAGL 321
BLAST of mRNA_Ecto-sp13_S_contig11782.1529.1 vs. uniprot
Match: A0A7S1XC32_9RHOD (Probable ATP-dependent transporter ycf16 n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XC32_9RHOD) HSP 1 Score: 123 bits (309), Expect = 1.730e-31 Identity = 59/124 (47.58%), Postives = 85/124 (68.55%), Query Frame = 1
Query: 1 RDVDARHRPDLPPVLNGVTLSVKCGERVGICGRSGSGKSSLALALVRVVECCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDPLGQCSDARIWEIIDMVGLRDAVVDLPLGL 372
RDV ++R P VLN ++ +++ G++VG+CGR+G+GKSSL +AL R+VE G + LDG ++R L LA LR +T+ISQD LFS +R +DP + SD+ IWE I+ V L++ V LPL L
Sbjct: 125 RDVVLKYRESQPAVLNQLSFTIEGGQKVGVCGRTGAGKSSLIMALFRMVELSSGQILLDGMNVRSLGLATLRKNITIISQDPALFSDTIRSNVDPFHEHSDSEIWEAIERVSLKELVSSLPLRL 248
BLAST of mRNA_Ecto-sp13_S_contig11782.1529.1 vs. uniprot
Match: A0A7S1KQE0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1KQE0_9EUKA) HSP 1 Score: 117 bits (292), Expect = 2.450e-31 Identity = 56/115 (48.70%), Postives = 80/115 (69.57%), Query Frame = 1
Query: 1 RDVDARHRPDLPPVLNGVTLSVKCGERVGICGRSGSGKSSLALALVRVVECCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDPLGQCSDARIWEIIDMVGLRD 345
+D R+RPDL PVLNG+TL ++ GE++GI GR+G+GKSS+ L L R+VE G + +DG +I EL L LR +++I QD LFSG VR +DP Q +DA++WE I+ +R+
Sbjct: 15 KDYKMRYRPDLDPVLNGLTLDIQAGEKIGIVGRTGAGKSSIMLTLYRMVEATAGRIEIDGINISELHLKPLRRALSIIPQDPILFSGTVRSNLDPFRQHTDAQLWECIESAHMRE 129 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11782.1529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11782.1529.1 >prot_Ecto-sp13_S_contig11782.1529.1 ID=prot_Ecto-sp13_S_contig11782.1529.1|Name=mRNA_Ecto-sp13_S_contig11782.1529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp RDVDARHRPDLPPVLNGVTLSVKCGERVGICGRSGSGKSSLALALVRVVEback to top mRNA from alignment at Ecto-sp13_S_contig11782:3..1362+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11782.1529.1 ID=mRNA_Ecto-sp13_S_contig11782.1529.1|Name=mRNA_Ecto-sp13_S_contig11782.1529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11782:3..1362+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11782:3..1362+ >mRNA_Ecto-sp13_S_contig11782.1529.1 ID=mRNA_Ecto-sp13_S_contig11782.1529.1|Name=mRNA_Ecto-sp13_S_contig11782.1529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11782:3..1362+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |