mRNA_Ecto-sp13_S_contig11782.1529.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11782.1529.1
Unique NamemRNA_Ecto-sp13_S_contig11782.1529.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11782.1529.1 vs. uniprot
Match: D8LHA4_ECTSI (Similar to canalicular multispecific organic anion transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA4_ECTSI)

HSP 1 Score: 244 bits (622), Expect = 1.880e-72
Identity = 121/124 (97.58%), Postives = 123/124 (99.19%), Query Frame = 1
Query:    1 RDVDARHRPDLPPVLNGVTLSVKCGERVGICGRSGSGKSSLALALVRVVECCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDPLGQCSDARIWEIIDMVGLRDAVVDLPLGL 372
            RDVDARHRPDLP VLNGVTLSVKCGERVGICGRSGSGKSSLALALVRVVECCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDP+GQCSDARIWEII+MVGLRDAVVDLPLGL
Sbjct: 1095 RDVDARHRPDLPLVLNGVTLSVKCGERVGICGRSGSGKSSLALALVRVVECCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDPVGQCSDARIWEIIEMVGLRDAVVDLPLGL 1218          
BLAST of mRNA_Ecto-sp13_S_contig11782.1529.1 vs. uniprot
Match: A0A6H5JWW8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW8_9PHAE)

HSP 1 Score: 238 bits (608), Expect = 1.330e-70
Identity = 119/124 (95.97%), Postives = 121/124 (97.58%), Query Frame = 1
Query:    1 RDVDARHRPDLPPVLNGVTLSVKCGERVGICGRSGSGKSSLALALVRVVECCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDPLGQCSDARIWEIIDMVGLRDAVVDLPLGL 372
            RDV ARHRPDL PVLNGVTLSVKCGE VGICGRSGSGKSSLALALVR+VECCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDPLGQCSDARIWEII+MVGLRDAVVDLPLGL
Sbjct: 1014 RDVYARHRPDLLPVLNGVTLSVKCGELVGICGRSGSGKSSLALALVRIVECCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDPLGQCSDARIWEIIEMVGLRDAVVDLPLGL 1137          
BLAST of mRNA_Ecto-sp13_S_contig11782.1529.1 vs. uniprot
Match: A0A7S3XQF6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQF6_HETAK)

HSP 1 Score: 132 bits (332), Expect = 2.310e-33
Identity = 61/124 (49.19%), Postives = 88/124 (70.97%), Query Frame = 1
Query:    1 RDVDARHRPDLPPVLNGVTLSVKCGERVGICGRSGSGKSSLALALVRVVECCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDPLGQCSDARIWEIIDMVGLRDAVVDLPLGL 372
            RDV ARHRP LP VL  V L V  GE +G+CGR+G GKS+L  ALVR++E   G + +DG DI  +PL  LRS +TVI QDAH+FSG +RE +DP+G   ++ +W++++ + ++D ++ +P GL
Sbjct:  586 RDVRARHRPGLPLVLRDVALEVGPGELLGVCGRTGCGKSTLVAALVRMLEVESGKILIDGIDIGSVPLKKLRSKITVIPQDAHIFSGTLREVLDPVGAFPESALWDVLEQLEMKDTILSMPKGL 709          
BLAST of mRNA_Ecto-sp13_S_contig11782.1529.1 vs. uniprot
Match: A0A8J5TN04_HOMAM (Canalicular multispecific organic anion transporter 2-like 2 n=1 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5TN04_HOMAM)

HSP 1 Score: 127 bits (320), Expect = 9.830e-32
Identity = 60/124 (48.39%), Postives = 86/124 (69.35%), Query Frame = 1
Query:    1 RDVDARHRPDLPPVLNGVTLSVKCGERVGICGRSGSGKSSLALALVRVVECCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDPLGQCSDARIWEIIDMVGLRDAVVDLPLGL 372
            RDV   H P L PVL G+  ++K GE+VG+CGR+GSGKSSL L+L R+VE   G + +DG +I+ +PL+LLR  ++VI QD HLF G +R  +DPLGQ  D  +W+ +++  L+  V ++P GL
Sbjct:  817 RDVTLTHDPSLDPVLTGLNFTIKPGEKVGLCGRTGSGKSSLILSLYRLVEARHGTIQVDGTNIQHVPLSLLRGSISVIPQDTHLFCGTLRFNLDPLGQRPDDHLWKALEVAQLQSLVSEMPEGL 940          
BLAST of mRNA_Ecto-sp13_S_contig11782.1529.1 vs. uniprot
Match: UPI001C45249E (ATP-binding cassette sub-family C member 9-like isoform X1 n=2 Tax=Homarus americanus TaxID=6706 RepID=UPI001C45249E)

HSP 1 Score: 127 bits (320), Expect = 1.010e-31
Identity = 60/124 (48.39%), Postives = 86/124 (69.35%), Query Frame = 1
Query:    1 RDVDARHRPDLPPVLNGVTLSVKCGERVGICGRSGSGKSSLALALVRVVECCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDPLGQCSDARIWEIIDMVGLRDAVVDLPLGL 372
            RDV   H P L PVL G+  ++K GE+VG+CGR+GSGKSSL L+L R+VE   G + +DG +I+ +PL+LLR  ++VI QD HLF G +R  +DPLGQ  D  +W+ +++  L+  V ++P GL
Sbjct: 1729 RDVTLTHDPSLDPVLTGLNFTIKPGEKVGLCGRTGSGKSSLILSLYRLVEARHGTIQVDGTNIQHVPLSLLRGSISVIPQDTHLFCGTLRFNLDPLGQRPDDHLWKALEVAQLQSLVSEMPEGL 1852          
BLAST of mRNA_Ecto-sp13_S_contig11782.1529.1 vs. uniprot
Match: A0A7S1FHG0_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FHG0_NOCSC)

HSP 1 Score: 121 bits (303), Expect = 1.130e-31
Identity = 60/124 (48.39%), Postives = 83/124 (66.94%), Query Frame = 1
Query:    1 RDVDARHRPDLPPVLNGVTLSVKCGERVGICGRSGSGKSSLALALVRVVECCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDPLGQCSDARIWEIIDMVGLRDAVVDLPLGL 372
            RDV+ R++P LP VLNG+TLSV  G R+G+CGR+GSGKS+L LA  R++E  RG + +DG DI  +PL  +RS + ++ QD  +FSG VR  +D  G  +D R+WE + +  L D V  L  GL
Sbjct:   15 RDVELRYQPHLPTVLNGLTLSVAPGTRLGVCGRTGSGKSTLFLASFRMMETTRGAILVDGVDISTVPLLAIRSRLAIVPQDPLMFSGTVRSNLDFHGTHTDQRLWEALRLAHLEDQVQSLQRGL 138          
BLAST of mRNA_Ecto-sp13_S_contig11782.1529.1 vs. uniprot
Match: C1MQY8_MICPC (ATP-binding cassette superfamily n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MQY8_MICPC)

HSP 1 Score: 127 bits (319), Expect = 1.360e-31
Identity = 64/123 (52.03%), Postives = 86/123 (69.92%), Query Frame = 1
Query:    4 DVDARHRPDLPPVLNGVTLSVKCGERVGICGRSGSGKSSLALALVRVVECCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDPLGQCSDARIWEIIDMVGLRDAVVDLPLGL 372
            ++  R+RP LP VLNGV+ +V+ GE+VGICGR+GSGKSSL +AL R+VE C G ++LDG D+  +PL  LRS VT I QD  LFSG VR+ +DP    +DA +W  ++ V L+ AV +   GL
Sbjct: 1050 NLQLRYRPGLPLVLNGVSFNVQAGEKVGICGRTGSGKSSLIVALWRLVEPCGGAIWLDGVDVSTIPLKTLRSAVTCIPQDPILFSGTVRDNLDPFKNHADAELWFALEAVQLKKAVSETGEGL 1172          
BLAST of mRNA_Ecto-sp13_S_contig11782.1529.1 vs. uniprot
Match: A0A8J2R617_9NEOP ((African queen) hypothetical protein n=1 Tax=Danaus chrysippus TaxID=151541 RepID=A0A8J2R617_9NEOP)

HSP 1 Score: 125 bits (313), Expect = 1.460e-31
Identity = 60/123 (48.78%), Postives = 81/123 (65.85%), Query Frame = 1
Query:    4 DVDARHRPDLPPVLNGVTLSVKCGERVGICGRSGSGKSSLALALVRVVECCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDPLGQCSDARIWEIIDMVGLRDAVVDLPLGL 372
            DV  +H+P+ PPVL  + L++K G++V ICGRSGSGKS+L L      + C G V LDG+D+ ++PL  LR  V V+ Q+A LFSG +RE +DPLG  +D  IWE +  VGL D +   P GL
Sbjct:  199 DVSVQHQPNRPPVLKNINLTIKPGQKVAICGRSGSGKSTLLLTCAGATKICGGRVLLDGRDVTKVPLRALRHRVVVLPQEAILFSGTLRENLDPLGMHTDEEIWESLKAVGLYDYISAQPAGL 321          
BLAST of mRNA_Ecto-sp13_S_contig11782.1529.1 vs. uniprot
Match: A0A7S1XC32_9RHOD (Probable ATP-dependent transporter ycf16 n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XC32_9RHOD)

HSP 1 Score: 123 bits (309), Expect = 1.730e-31
Identity = 59/124 (47.58%), Postives = 85/124 (68.55%), Query Frame = 1
Query:    1 RDVDARHRPDLPPVLNGVTLSVKCGERVGICGRSGSGKSSLALALVRVVECCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDPLGQCSDARIWEIIDMVGLRDAVVDLPLGL 372
            RDV  ++R   P VLN ++ +++ G++VG+CGR+G+GKSSL +AL R+VE   G + LDG ++R L LA LR  +T+ISQD  LFS  +R  +DP  + SD+ IWE I+ V L++ V  LPL L
Sbjct:  125 RDVVLKYRESQPAVLNQLSFTIEGGQKVGVCGRTGAGKSSLIMALFRMVELSSGQILLDGMNVRSLGLATLRKNITIISQDPALFSDTIRSNVDPFHEHSDSEIWEAIERVSLKELVSSLPLRL 248          
BLAST of mRNA_Ecto-sp13_S_contig11782.1529.1 vs. uniprot
Match: A0A7S1KQE0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1KQE0_9EUKA)

HSP 1 Score: 117 bits (292), Expect = 2.450e-31
Identity = 56/115 (48.70%), Postives = 80/115 (69.57%), Query Frame = 1
Query:    1 RDVDARHRPDLPPVLNGVTLSVKCGERVGICGRSGSGKSSLALALVRVVECCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDPLGQCSDARIWEIIDMVGLRD 345
            +D   R+RPDL PVLNG+TL ++ GE++GI GR+G+GKSS+ L L R+VE   G + +DG +I EL L  LR  +++I QD  LFSG VR  +DP  Q +DA++WE I+   +R+
Sbjct:   15 KDYKMRYRPDLDPVLNGLTLDIQAGEKIGIVGRTGAGKSSIMLTLYRMVEATAGRIEIDGINISELHLKPLRRALSIIPQDPILFSGTVRSNLDPFRQHTDAQLWECIESAHMRE 129          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11782.1529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHA4_ECTSI1.880e-7297.58Similar to canalicular multispecific organic anion... [more]
A0A6H5JWW8_9PHAE1.330e-7095.97ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A7S3XQF6_HETAK2.310e-3349.19Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8J5TN04_HOMAM9.830e-3248.39Canalicular multispecific organic anion transporte... [more]
UPI001C45249E1.010e-3148.39ATP-binding cassette sub-family C member 9-like is... [more]
A0A7S1FHG0_NOCSC1.130e-3148.39Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]
C1MQY8_MICPC1.360e-3152.03ATP-binding cassette superfamily n=1 Tax=Micromona... [more]
A0A8J2R617_9NEOP1.460e-3148.78(African queen) hypothetical protein n=1 Tax=Danau... [more]
A0A7S1XC32_9RHOD1.730e-3147.58Probable ATP-dependent transporter ycf16 n=1 Tax=C... [more]
A0A7S1KQE0_9EUKA2.450e-3148.70Hypothetical protein (Fragment) n=1 Tax=Percolomon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11782contigEcto-sp13_S_contig11782:3..1362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score245.7
Seed ortholog evalue1.1e-62
Seed eggNOG ortholog2880.D8LHA4
Preferred nameABCC8
Model size372
KEGG koko:K05033
KEGG TC3.A.1.208
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
Cds size372
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462620.7323236-CDS-Ecto-sp13_S_contig11782:2..701681462620.7323236-CDS-Ecto-sp13_S_contig11782:2..70Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11782 3..70 +
1681462620.7428186-CDS-Ecto-sp13_S_contig11782:443..6691681462620.7428186-CDS-Ecto-sp13_S_contig11782:443..669Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11782 444..669 +
1681462620.7517815-CDS-Ecto-sp13_S_contig11782:1284..13621681462620.7517815-CDS-Ecto-sp13_S_contig11782:1284..1362Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11782 1285..1362 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11782.1529.1prot_Ecto-sp13_S_contig11782.1529.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11782 3..1362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11782.1529.1

>prot_Ecto-sp13_S_contig11782.1529.1 ID=prot_Ecto-sp13_S_contig11782.1529.1|Name=mRNA_Ecto-sp13_S_contig11782.1529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
RDVDARHRPDLPPVLNGVTLSVKCGERVGICGRSGSGKSSLALALVRVVE
CCRGGVFLDGQDIRELPLALLRSGVTVISQDAHLFSGNVREAIDPLGQCS
DARIWEIIDMVGLRDAVVDLPLGL
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mRNA from alignment at Ecto-sp13_S_contig11782:3..1362+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11782.1529.1 ID=mRNA_Ecto-sp13_S_contig11782.1529.1|Name=mRNA_Ecto-sp13_S_contig11782.1529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11782:3..1362+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGACGTGGATGCGAGACATCGGCCAGACCTGCCCCCCGTTCTGAACGG CGTCACCTTGTCTGTCAAGTGAGCGGCACGCGATGAAAACCCAGTACAAG CAGTAAATGGTACATGTGGTACGCTAAACGGCTCCGTCTTTGTCGTGTAG TCAAGCCGACTGGTCGATCACTCGTCGCGGGAACCCCCATCACCTTCAGA GAGATAGTTGGATGACGGCCGCTCCGGTGCAGAGTGCGTGCATGTGAACC CGACGAACAACCTATCCTTTCTCGTAATGATTTCATCGATCCCCCTTTCC TTTTGAGTTGCACGGAGAATCTCATGGGCTAGCCGTTGTATAAAAATCGT ACGACGGGAGAGTAAGCTGGAGTTTGCGGCCGCTATTCCCCAAGAATTTC CCCCCCTGCCGGGCGAACGATCCCCCCCCTCCCCCGACAAGGTGTGGAGA GCGTGTTGGAATTTGCGGCCGGTCAGGATCAGGAAAGTCAAGCCTAGCGC TGGCCCTTGTAAGGGTCGTGGAGTGCTGTCGAGGTGGCGTGTTCCTGGAC GGGCAGGACATCAGGGAGCTGCCCCTAGCCTTGCTGCGTTCGGGCGTGAC GGTGATCTCCCAAGATGCGCACCTCTTCTCGGGAAACGTTCGCGAAGCCA TCGATCCTCTTGGACAGGTGGGCCTCGTATAGTAGCAGCTGTAGGATTTT GAGTTTGGGGCGGACAGCTTTTCTGGAATTGTGATATTTCATCACCTGAA AACGAGATACGGGTGGCTATTTGAGTAGGAGTATGCCGTCCGCGCTACGT AAGAATATTGGTTAAGCTTTGGTGCTGCGCACCGGAGGTTTCGATGTTGT TGCCTTGATCCGATTCAGAATCAAGGATCCCTTGAGTGTGAATCTATCTT GACCCCAGCCTCGTGTCGGAGAACGTTGAGAGACCTCGTCGCACGGGTAA CGTCAAAACCAAAACTATCTGATTGTCGAAGGAAAAATTCTTGGCTAACA GGAGTAGCATAGTCGCACAACGCTTCTTGGTGTACGCGGCATCCTCCGAT TCAGTGTAGAAATATTTTTTTTCGAGGGAGACGCGCGTGAGGATGGTTTA CAAACACCACATTTCTCTTTCCCCGCGTCCCGTCCTTCCTCTTGCCGTCG CTACACAAATAGGACGTTTTGCGAAGAAACCCTTGGTGGTGTCGATCGGA TTCACCATCGTTTCGCCTTTTTTCTACTTTTCCCACATGTTCCCTCCCAA TCCGCGCCCGGGCAATGGAACACGACCACAAGTGCTCGGATGCGCGAATC TGGGAGATCATCGACATGGTCGGCCTGAGGGATGCCGTCGTGGATCTACC GCTGGGGCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11782:3..1362+

>mRNA_Ecto-sp13_S_contig11782.1529.1 ID=mRNA_Ecto-sp13_S_contig11782.1529.1|Name=mRNA_Ecto-sp13_S_contig11782.1529.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11782:3..1362+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGACGTGGATGCGAGACATCGGCCAGACCTGCCCCCCGTTCTGAACGG
CGTCACCTTGTCTGTCAAGTGTGGAGAGCGTGTTGGAATTTGCGGCCGGT
CAGGATCAGGAAAGTCAAGCCTAGCGCTGGCCCTTGTAAGGGTCGTGGAG
TGCTGTCGAGGTGGCGTGTTCCTGGACGGGCAGGACATCAGGGAGCTGCC
CCTAGCCTTGCTGCGTTCGGGCGTGACGGTGATCTCCCAAGATGCGCACC
TCTTCTCGGGAAACGTTCGCGAAGCCATCGATCCTCTTGGACAGTGCTCG
GATGCGCGAATCTGGGAGATCATCGACATGGTCGGCCTGAGGGATGCCGT
CGTGGATCTACCGCTGGGGCTG
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