mRNA_Ecto-sp13_S_contig11777.1524.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11777.1524.1
Unique NamemRNA_Ecto-sp13_S_contig11777.1524.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11777.1524.1 vs. uniprot
Match: D8LTV9_ECTSI (PhoD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTV9_ECTSI)

HSP 1 Score: 301 bits (772), Expect = 1.280e-92
Identity = 150/164 (91.46%), Postives = 152/164 (92.68%), Query Frame = 2 
Query:  122 EQKAMTSLLSKWQTAKPNRAVVTLAGDVHIGGFTDSWHNDASVPLHQMTASAVGNTPEKDLDIVKESLLRGIMHADEHMFEFKVKHHGWIFGPNFGVLDIQLATGGRPNIAMTLVPHVGDPKIRNLGLGNSKISVTDPNQSDASRAAHA----------RRTRG 583
            EQKAMTSLLS WQTAKPNRAVVTLAGDVHIGGFTDSWHNDASVPLHQMTASAVGNTPEKDLDIVKESLLRGIMHADEHMFEFKVKHHGWIFGPNFGVLDIQLATGGRP+IAMTLVPHVGDPKIRNL LGNSKISVT+PNQSDASRAAHA          RRTRG
Sbjct:  432 EQKAMTSLLSNWQTAKPNRAVVTLAGDVHIGGFTDSWHNDASVPLHQMTASAVGNTPEKDLDIVKESLLRGIMHADEHMFEFKVKHHGWIFGPNFGVLDIQLATGGRPDIAMTLVPHVGDPKIRNLELGNSKISVTNPNQSDASRAAHACAKTLDHSPRRRTRG 595
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BLAST of mRNA_Ecto-sp13_S_contig11777.1524.1 vs. uniprot
Match: D8LTV8_ECTSI (PhoD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTV8_ECTSI)

HSP 1 Score: 218 bits (556), Expect = 2.950e-61
Identity = 98/149 (65.77%), Postives = 123/149 (82.55%), Query Frame = 2 
Query:  122 EQKAMTSLLSKWQTAKPNRAVVTLAGDVHIGGFTDSWHNDASVPLHQMTASAVGNTPEKDLDIVKESLLRGIMHADEHMFEFKVKHHGWIFGPNFGVLDIQLATGG-RPNIAMTLVPHVGDPKIRNLGLGNSKISVTDPNQSDASRAAH 565
            EQKA  SLL+ WQ A+PNRA +TL GD+H+GGFTDSWH+++ VPLHQMTASA+GN PEKDLD VKE ++RG+MHADE++F FKVKHH WI+GPN+G++D+ L  G  RP+I +TLVPHVGDPKIRNL LG++ + V    QS ASR+AH
Sbjct:  376 EQKAALSLLNSWQLARPNRAAITLGGDLHLGGFTDSWHDESDVPLHQMTASAIGNMPEKDLDAVKEMVIRGVMHADENLFAFKVKHHEWIYGPNYGMVDLLLPKGSNRPDITLTLVPHVGDPKIRNLELGSADVEVKKAGQSAASRSAH 524
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BLAST of mRNA_Ecto-sp13_S_contig11777.1524.1 vs. uniprot
Match: A0A6H5KIJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ5_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 2.950e-57
Identity = 95/160 (59.38%), Postives = 122/160 (76.25%), Query Frame = 2 
Query:  122 EQKAMTSLLSKWQTAKPNRAVVTLAGDVHIGGFTDSW-----------HNDASVPLHQMTASAVGNTPEKDLDIVKESLLRGIMHADEHMFEFKVKHHGWIFGPNFGVLDIQLATGG-RPNIAMTLVPHVGDPKIRNLGLGNSKISVTDPNQSDASRAAH 565
            EQKA  SLL+ WQ A+ NRA +TL GD+H+GGFTDSW           H+++ VPLHQMTASA+GN PEKDLD VKE ++RG+MHA E++F FKVKHH W++GPN+G++D+ L  G  RP+I +TLVPHVGDPKIRNL LG++ I V   +QS ASR+A+
Sbjct:  160 EQKAALSLLNSWQLARSNRAAITLGGDLHLGGFTDSWCCVPAVVSRLQHDESDVPLHQMTASAIGNMPEKDLDAVKEMVIRGVMHAGENLFAFKVKHHEWVYGPNYGMVDLLLPKGSDRPDITLTLVPHVGDPKIRNLELGSADIEVKKADQSAASRSAY 319
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BLAST of mRNA_Ecto-sp13_S_contig11777.1524.1 vs. uniprot
Match: D7FMC9_ECTSI (PhoD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMC9_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 9.330e-51
Identity = 87/153 (56.86%), Postives = 112/153 (73.20%), Query Frame = 2 
Query:  122 EQKAMTSLLSKWQTAKPNRAVVTLAGDVHIGGFTDSWHNDASVPLHQMTASAVGNTPEKDLDIVKESLLRGIMHADEHMFEFKVKHHGWIFGPNFGVLDIQLATGG----RPNIAMTLVPHVGDPKIRNLGLGNSKISVTDPNQSDASRAAHA 568
            EQ+A+T LLS WQ A+ NRAV+TL GDVH+GGFTDSWHN + +PLHQ+TASAVGN PE  +   +E  LR  MHADE +F+FKV+HH WI+G N+G+LD +L   G    RP++ +TLV   GDPK+RNL  GNS + + +   S+AS AAHA
Sbjct:  324 EQQAITKLLSDWQNARRNRAVITLGGDVHMGGFTDSWHNGSDIPLHQLTASAVGNQPEGGMTTPREVALRSAMHADERLFDFKVEHHEWIYGANYGMLDFKLHEQGHGRHRPHVTLTLVGEKGDPKVRNLQFGNSSVGLKNREHSEASEAAHA 476
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11777.1524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LTV9_ECTSI1.280e-9291.46PhoD domain-containing protein n=2 Tax=Ectocarpus ... [more]
D8LTV8_ECTSI2.950e-6165.77PhoD domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KIJ5_9PHAE2.950e-5759.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMC9_ECTSI9.330e-5156.86PhoD domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11777contigEcto-sp13_S_contig11777:2783..5187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1417
Hectar predicted targeting categoryother localisation
Exons5
Cds size765
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11777.1524.1prot_Ecto-sp13_S_contig11777.1524.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11777 3302..5054 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462620.2588758-UTR-Ecto-sp13_S_contig11777:2782..33011681462620.2588758-UTR-Ecto-sp13_S_contig11777:2782..3301Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11777 2783..3301 -
1681462620.3254838-UTR-Ecto-sp13_S_contig11777:5054..51871681462620.3254838-UTR-Ecto-sp13_S_contig11777:5054..5187Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11777 5055..5187 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462620.282335-CDS-Ecto-sp13_S_contig11777:3301..36311681462620.282335-CDS-Ecto-sp13_S_contig11777:3301..3631Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11777 3302..3631 -
1681462620.2908642-CDS-Ecto-sp13_S_contig11777:3660..37731681462620.2908642-CDS-Ecto-sp13_S_contig11777:3660..3773Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11777 3661..3773 -
1681462620.2993014-CDS-Ecto-sp13_S_contig11777:3924..40091681462620.2993014-CDS-Ecto-sp13_S_contig11777:3924..4009Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11777 3925..4009 -
1681462620.3083193-CDS-Ecto-sp13_S_contig11777:4462..46001681462620.3083193-CDS-Ecto-sp13_S_contig11777:4462..4600Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11777 4463..4600 -
1681462620.317356-CDS-Ecto-sp13_S_contig11777:4955..50541681462620.317356-CDS-Ecto-sp13_S_contig11777:4955..5054Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11777 4956..5054 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11777.1524.1

>prot_Ecto-sp13_S_contig11777.1524.1 ID=prot_Ecto-sp13_S_contig11777.1524.1|Name=mRNA_Ecto-sp13_S_contig11777.1524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=255bp
MTSLLSKWQTAKPNRAVVTLAGDVHIGGFTDSWHNDASVPLHQMTASAVG
NTPEKDLDIVKESLLRGIMHADEHMFEFKVKHHGWIFGPNFGVLDIQLAT
GGRPNIAMTLVPHVGDPKIRNLGLGNSKISVTDPNQSDASRAAHARRTRG
EDRLQLHGVLMIGRAIAAAAAAAANSQLHGCLDDGVLTAAAAKGFVSGSP
SAASKKVDRAPTWQACWCEGWLASCRRMYWRFVLRGVIIRPPLGSVRRDP
FRVV*
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mRNA from alignment at Ecto-sp13_S_contig11777:2783..5187-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11777.1524.1 ID=mRNA_Ecto-sp13_S_contig11777.1524.1|Name=mRNA_Ecto-sp13_S_contig11777.1524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11777:2783..5187- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTTTGGCCATTCACTTCCTCGATCGCCTACACGTGTGCCGCTTTTGCG
CTCTCTCGCGCGCTTGTCGTGTGTGTCGCTTTTACACCCTTGGGACGTCA
TGGGACCTACCTGTACGCAGGGAGCAGAAGGCCATGACGTCTTTGTTGAG
CAAGTGGCAGACGGCCAAGCCCAACCGCGCCGTCGTGACGCTGGCGGGTG
ACGTCCACATCGGGGGCTTCACGGACTCGTGGGTAAGAGTAGGGGGGGAG
CTTCGTGGCGGGGGCGTGGGACGGAGGAAGGCGGGGGGGGGGGATAGTAG
TTGCCGTCTCGTTGATCTACGCTCGCTTTTGGCGTTGCCCGTACAGTCTT
GTAAAGATACACTGATTCCCGCCGGTTGGTTTTGTCTTTTTGCGTGTGGC
TTTTTGATCTGGTCGGTTGGTCGATGGTATCGCTGCGCGTGGATGCCACG
CCTTCTCTTCGTACTGCATTCATCAGTTCATCGTTCTGATTTCATTCGTC
CTCGTTTTTTTTTCTCGCCTCCGTGCTGTTCCGACCCCTTTCTTCATGTG
TCGGGTGCTGCCTGTCGTATGTCCCGCCGCGCGGCAGCATAACGATGCAA
GCGTGCCTCTTCACCAGATGACCGCGTCTGCCGTGGGAAACACCCCAGAG
AAGGACCTCGACATCGTTAAGGAGAGCCTCCTGCGCGGGATCATGCACGC
GGACGAGCACATGTTCGAGTTCAAGGTGTAATTTTGACTACGTTGTGCCC
GGTTTTTGTCGAGGTGGTATTCATGGCCGAAGCGAGCGTCTATTTGAGCG
GCACGGCCTGTGGTGGATTAATGGGTGGAAGAAGTTACACCTTGGGGGGG
GTTGATGATGATGATCAGTCAAGCAGGTCGTTGGGGAGGCGCGGGCGCCA
CTCTCTTTTTCCGATCGGCGGTTGCCTCAATACACTGCGTCACAACCGCG
TTTCCCCTTTTCTGGATGATCATTTACTTTATTCCGTACACTGTGATCTT
CTGATGGCTTTAGCATTTTTCATATCACGGACTCAAGCTTTTGTTAGATT
TTGGGATTAGGAACTGGCACGAGATGAATGTGAAGACAACATCAACAACA
CATGTAGGACCGACTGTACTTAGACACCGAACTTGTGCCTTTGTCGCGCC
TGGGTGTGTGGACCGCCTCGATATGTAGGTGAAGCACCACGGATGGATCT
TCGGTCCGAACTTCGGCGTGCTCGACATCCAGCTCGCCACCGGGGGACGG
CCGAATATCGCAAGTGAGTTTGGGATCTCTTCCAAAATATCCGCGTCATT
CTTGTGCTCAGTTCCACTTTTCAAGCACTCACACCGTCCGTCCTGTGTCA
CGTACCCCCCCCTCCACCGGATCGATATCTTGCGCGCGTACCCCCCCCCC
CACGAATCGTACAGTGACTCTCGTGCCGCACGTGGGAGATCCCAAGATCC
GGAACCTCGGGCTCGGAAACTCTAAGATAAGCGTCACCGACCCGAACCAA
TCGGACGCCTCGCGCGCTGCCCACGCCTGCGCCAAGACCTTGGCCATCCC
CCCCGCCGGCGTACCCGCGGCGAAGACCGGCTGCAGCTGCACGGTGTCTT
GATGATAGGAAGGGCCATCGCCGCCGCCGCCGCCGCCGCCGCGAATTCGC
AGCTACACGGATGTCTTGATGATGGGGTACTGACTGCTGCCGCCGCGAAA
GGCTTCGTTTCCGGATCTCCTTCCGCGGCATCAAAGAAGGTGGATCGAGC
GCCGACGTGGCAGGCGTGTTGGTGTGAAGGATGGCTGGCTTCTTGCAGGC
GTATGTATTGGCGTTTCGTCCTCCGTGGCGTCATCATCCGGCCGCCTCTT
GGCTCTGTCCGACGCGACCCCTTCCGTGTTGTATAGACCTGGTATGTGTT
TTTTTTTCTTTCGTGTCGCCGGTGTGGCTGAATCCACTCCTGGCATGTCT
AATATACCGTTGACTCCTTCTCGCAGCGGGGCTGGGAGTGCATTCCCCGG
GCTTGGTGGATGGTGTGATTCGCTCGTTGCCTGGTCGAGCCAACCGGTAC
CATGTGTGTTTTGGTTGTTCTCCGATGTGGCGCTGGTGGATGACTATTCA
CCGGTCGTGCCCGCATTTGTCTAGTTTGAGAAAGGGGGAGGGCACACGGG
GAAGGCAGACGCTGCGAGATATATGTAGCGTTGAAGGATGGATCAACGCA
GCCTTGGGCCTTGAAGTTCTACAAACTCGACGACTGTAAGCTTGTTGGGT
GTCTGGCCGTGGTGCGCATCGACCTGGCATTGGAACAGAGGTTGGAGATC
TCGGCCTCACTCGGGCAGTAGTCGGGAGAGGTGTGATGAGACTCGAGGGC
GTGATGTTGCATAGGTGAGGCTTTGTCGCCCGAGTGACTCACGCACCGGA
AGCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11777:2783..5187-

>mRNA_Ecto-sp13_S_contig11777.1524.1 ID=mRNA_Ecto-sp13_S_contig11777.1524.1|Name=mRNA_Ecto-sp13_S_contig11777.1524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=765bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11777:2783..5187- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGTCTTTGTTGAGCAAGTGGCAGACGGCCAAGCCCAACCGCGCCGT
CGTGACGCTGGCGGGTGACGTCCACATCGGGGGCTTCACGGACTCGTGGC
ATAACGATGCAAGCGTGCCTCTTCACCAGATGACCGCGTCTGCCGTGGGA
AACACCCCAGAGAAGGACCTCGACATCGTTAAGGAGAGCCTCCTGCGCGG
GATCATGCACGCGGACGAGCACATGTTCGAGTTCAAGGTGAAGCACCACG
GATGGATCTTCGGTCCGAACTTCGGCGTGCTCGACATCCAGCTCGCCACC
GGGGGACGGCCGAATATCGCAATGACTCTCGTGCCGCACGTGGGAGATCC
CAAGATCCGGAACCTCGGGCTCGGAAACTCTAAGATAAGCGTCACCGACC
CGAACCAATCGGACGCCTCGCGCGCTGCCCACGCCCGGCGTACCCGCGGC
GAAGACCGGCTGCAGCTGCACGGTGTCTTGATGATAGGAAGGGCCATCGC
CGCCGCCGCCGCCGCCGCCGCGAATTCGCAGCTACACGGATGTCTTGATG
ATGGGGTACTGACTGCTGCCGCCGCGAAAGGCTTCGTTTCCGGATCTCCT
TCCGCGGCATCAAAGAAGGTGGATCGAGCGCCGACGTGGCAGGCGTGTTG
GTGTGAAGGATGGCTGGCTTCTTGCAGGCGTATGTATTGGCGTTTCGTCC
TCCGTGGCGTCATCATCCGGCCGCCTCTTGGCTCTGTCCGACGCGACCCC
TTCCGTGTTGTATAG
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