mRNA_Ecto-sp13_S_contig11767.1518.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11767.1518.1 vs. uniprot
Match: A0A6H5JI15_9PHAE (ZZ-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI15_9PHAE) HSP 1 Score: 397 bits (1019), Expect = 6.780e-124 Identity = 428/713 (60.03%), Postives = 442/713 (61.99%), Query Frame = 1
Query: 4 DGDMVRFDSEEEFVAAMSYKSWESCLRVEVTAPKXXXXXXXXXXXXXXXXXXXXXXXXEEPIAIASSDPTPMSETASVISFVSNMXXXXXXXXXXXXXXXXXXXXXXXXXXX------SEDAPPSVRSLATPVPAPAPPVETAAAVEANXXXXXXXXXXXXXXSIADIARDSSXXXXXXXXXXXXXXXXXXXXXXXXXXDTEQPVWSCSPPAAPAGFGGPGTPARAFLTQVLPGLADVLARSIYAAHRGSDGVPNTSPASSREGXXXXXXXXXXXXXXXXXXXXVXXNXXXXXXXXXXXXXETA--------------------------------TAQPS-------------------------------------------------------------------------TEAPQXXXXXXXXXXXATSGPG---------------DTPGSNNGGRRTFAPGQGWRGRSNPQHGGWGEGRRKGHRWMRDLARRQQQHFERAVSGMGPVPPGIEVVRGDGGGVGCNRQPWCGPRMQRRXXXXXXXXXXXXXXXGVVPDKDTLAAATAPVSQQFPTPP-VGVAEKSDADKAAVAADTXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAASAPXXXXXXXXXXXXXXXXPSGEYHDMLAASMRSLASSMTASFPGSXXXXXXXXXXXXXXXXXXXXXXXXGNKSSAKPMARF 1761
DGDMVRFDSEEEFVAAMSYKSWE CLRVEVTA K XXX +E AIASSDPTPMSETASV+SFVSNM XXXXXXXXXXXXXXXXXXXXXXXX SEDAPP RSLA PVPA APPV+TAAAVEA+XXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXX V S PPAAPAGFGGPGTPARAFLTQVLPGLADVLARSIYAA+RGSDGVPNTSPAS+ EG XXXXXXXXXXXXXXXXX XX XXXXXXXXXXXXX T QP T+AP T+ DTPGSNNGGRRTFAPGQGWR RSNPQHGGWGEGRRKGHRWMRDLARRQQQ FERA SGMGPVPPG+EVVRG+GGGVGCNRQPWCGPRMQRR XXXXXXXXGV P KD LAA A ++Q FPTPP VG AEKSDAD AAVAA XXXXXXXXXXXXXXXXX PA +A XXXXXXXXXXXXXXX PSGEYHDMLAASMRSLASSMTASFP GNKSSAKPMAR+
Sbjct: 80 DGDMVRFDSEEEFVAAMSYKSWEGCLRVEVTALKPSPRPPAADPEPASVADAAAXXXSDELAAIASSDPTPMSETASVMSFVSNMSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGSEDAPPVARSLAAPVPALAPPVDTAAAVEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------VGSSLPPAAPAGFGGPGTPARAFLTQVLPGLADVLARSIYAANRGSDGVPNTSPASASEGGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTPEVPRTVQPPSAPTPXXXXXXXXXXXXXXVVHHGVKCDACDVCPIIGTRYKCAVRADFDLCEECERAPVGQGSPFPFLKIRTPTQAPAAIVCLLKHDQPGTAQEAAAXXXXXXXXXXXXXDTPGSNNGGRRTFAPGQGWRCRSNPQHGGWGEGRRKGHRWMRDLARRQQQQFERAASGMGPVPPGVEVVRGNGGGVGCNRQPWCGPRMQRRRDDDPATXXXXXXXXGVAPKKDALAALAASLTQLFPTPPPVGFAEKSDADNAAVAAXXXXXXXXXXXXXXXXXXXVEE--------PAETAXXXXXXXXXXXXXXXXPPSGEYHDMLAASMRSLASSMTASFPSPGSGSSAQEGGATAGKPSRNSGDTGGNKSSAKPMARY 773
BLAST of mRNA_Ecto-sp13_S_contig11767.1518.1 vs. uniprot
Match: D7FT16_ECTSI (N_BRCA1_IG domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT16_ECTSI) HSP 1 Score: 267 bits (683), Expect = 5.330e-77 Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 1
Query: 1726 GNKSSAKPMARFVTDVSVADGSPLPPNTRFVKTWCMRNDGPVTFPAGCKIVPVGGDLMAGPEDGVAVEQRGPGEEFHVSVPLTTPPLSGRYIGYWRLRTAEGQKFGHRVWADVLVTGGTADLVDEGTV 2109
GNKSSAKPMARFVTDVSVADGSPLPPNTRFVKTWCMRNDGPVTFP+GCKIVPVGGDLMAGPEDGVAVEQRGPGEEFHVSVPLTTPPLSGRYIGYWRLRTAEGQKFGHRVWADVLVTGGTADLVDEGTV
Sbjct: 287 GNKSSAKPMARFVTDVSVADGSPLPPNTRFVKTWCMRNDGPVTFPSGCKIVPVGGDLMAGPEDGVAVEQRGPGEEFHVSVPLTTPPLSGRYIGYWRLRTAEGQKFGHRVWADVLVTGGTADLVDEGTV 414
BLAST of mRNA_Ecto-sp13_S_contig11767.1518.1 vs. uniprot
Match: A0A6H5JHM7_9PHAE (N_BRCA1_IG domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM7_9PHAE) HSP 1 Score: 150 bits (380), Expect = 7.170e-39 Identity = 72/80 (90.00%), Postives = 75/80 (93.75%), Query Frame = 1
Query: 1759 FVTDVSVADGSPLPPNTRFVKTWCMRNDGPVTFPAGCKIVPVGGDLMAGPEDGVAVEQRGPGEEFHVS-VPLTTPPLSGR 1995
FVTDVSVADGSPLPPNTRFVKTWCMRNDGPVTFPAGCKIVPVGGDLMAGPEDGVA+EQRGPGEEFHVS V T P++GR
Sbjct: 44 FVTDVSVADGSPLPPNTRFVKTWCMRNDGPVTFPAGCKIVPVGGDLMAGPEDGVAIEQRGPGEEFHVSNVTSATGPITGR 123
BLAST of mRNA_Ecto-sp13_S_contig11767.1518.1 vs. uniprot
Match: A0A7S3XSC8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSC8_HETAK) HSP 1 Score: 129 bits (323), Expect = 5.930e-29 Identity = 63/114 (55.26%), Postives = 74/114 (64.91%), Query Frame = 1
Query: 1744 KPMARFVTDVSVADGSPLPPNTRFVKTWCMRNDGPVTFPAGCKIVPVGGDLMAGPEDGVAVEQRGPGEEFHVSVPLTTPPLSGRYIGYWRLRTAEGQKFGHRVWADVLVTGGTA 2085
KPMARFV DV++ DG+ + P F KTW MRNDG V FPAG ++V VGGDLM G V GPGEEF + + L P GRYIGYWRL+ EG FGHR+W DV V G +
Sbjct: 87 KPMARFVADVTIPDGTEVAPGASFTKTWKMRNDGAVAFPAGARLVNVGGDLMEGAPRPVGAH--GPGEEFALGLELQAPLRPGRYIGYWRLQAPEGHHFGHRLWVDVRVAEGAS 198
BLAST of mRNA_Ecto-sp13_S_contig11767.1518.1 vs. uniprot
Match: A0A6S9FPI1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FPI1_HETAK) HSP 1 Score: 129 bits (323), Expect = 8.500e-28 Identity = 63/114 (55.26%), Postives = 74/114 (64.91%), Query Frame = 1
Query: 1744 KPMARFVTDVSVADGSPLPPNTRFVKTWCMRNDGPVTFPAGCKIVPVGGDLMAGPEDGVAVEQRGPGEEFHVSVPLTTPPLSGRYIGYWRLRTAEGQKFGHRVWADVLVTGGTA 2085
KPMARFV DV++ DG+ + P F KTW MRNDG V FPAG ++V VGGDLM G V GPGEEF + + L P GRYIGYWRL+ EG FGHR+W DV V G +
Sbjct: 268 KPMARFVADVTIPDGTEVAPGASFTKTWKMRNDGAVAFPAGARLVNVGGDLMEGAPRPVGAH--GPGEEFALGLELQAPLRPGRYIGYWRLQAPEGHHFGHRLWVDVRVAEGAS 379
BLAST of mRNA_Ecto-sp13_S_contig11767.1518.1 vs. uniprot
Match: A0A7S4D636_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D636_HETAK) HSP 1 Score: 129 bits (323), Expect = 2.960e-27 Identity = 63/114 (55.26%), Postives = 74/114 (64.91%), Query Frame = 1
Query: 1744 KPMARFVTDVSVADGSPLPPNTRFVKTWCMRNDGPVTFPAGCKIVPVGGDLMAGPEDGVAVEQRGPGEEFHVSVPLTTPPLSGRYIGYWRLRTAEGQKFGHRVWADVLVTGGTA 2085
KPMARFV DV++ DG+ + P F KTW MRNDG V FPAG ++V VGGDLM G V GPGEEF + + L P GRYIGYWRL+ EG FGHR+W DV V G +
Sbjct: 477 KPMARFVADVTIPDGTEVAPGASFTKTWKMRNDGAVAFPAGARLVNVGGDLMEGAPRPVGAH--GPGEEFALGLELQAPLRPGRYIGYWRLQAPEGHHFGHRLWVDVRVAEGAS 588
BLAST of mRNA_Ecto-sp13_S_contig11767.1518.1 vs. uniprot
Match: A0A7S1G709_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G709_9STRA) HSP 1 Score: 107 bits (267), Expect = 2.990e-23 Identity = 57/115 (49.57%), Postives = 71/115 (61.74%), Query Frame = 1
Query: 1753 ARFVTDVSVADGSPLPPNTRFVKTWCMRNDGPVTFPAGCKIVPVGGDLMAGPEDGVAVEQRGPGEEFHVSVPLTTPPLSGRYIGYWRLRTAEGQKFGHRVWADVLVTGGTADLVD 2097
A FV V+ + + P TRF K W +RN G V +P G ++V VG M+GP +GVAVE PG E V+V LT P SGR+ YWRL T +G +FGHRVWADV+V AD D
Sbjct: 38 AHFVEHVTFQVKTTVAPGTRFEKVWRLRNVGDVQWPEGTRLVHVGNHDMSGPTEGVAVEAAHPGAEVDVAVELTAPAESGRHYSYWRLVTPDGVRFGHRVWADVVV----ADAAD 148
BLAST of mRNA_Ecto-sp13_S_contig11767.1518.1 vs. uniprot
Match: A0A485LEZ8_9STRA (Aste57867_20135 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LEZ8_9STRA) HSP 1 Score: 108 bits (271), Expect = 4.280e-21 Identity = 54/112 (48.21%), Postives = 71/112 (63.39%), Query Frame = 1
Query: 1741 AKPMARFVTDVSVADGSPLPPNTRFVKTWCMRNDGPVTFPAGCKIVPVGGDLMAGPEDGVAVEQRGPGEEFHVSVPLTTPPLSGRYIGYWRLRTAEGQKFGHRVWADVLVTG 2076
+KP A FV DVS DGS + FVKTW ++NDG +PA ++V VGGD + ED V+V PG+ VSV + P RY GYWRL TA+G+++GHR+W D+LV G
Sbjct: 345 SKPSASFVGDVSFPDGSTIRAGDTFVKTWRLKNDGKTRWPAKSRLVCVGGDHLEVGEDSVSVPILLPGKMIDVSVDMQAPIKPARYTGYWRLCTADGKRYGHRLWVDILVVG 456
BLAST of mRNA_Ecto-sp13_S_contig11767.1518.1 vs. uniprot
Match: A0A6G0WW99_9STRA (UBA domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WW99_9STRA) HSP 1 Score: 108 bits (270), Expect = 5.790e-21 Identity = 54/111 (48.65%), Postives = 71/111 (63.96%), Query Frame = 1
Query: 1744 KPMARFVTDVSVADGSPLPPNTRFVKTWCMRNDGPVTFPAGCKIVPVGGDLMAGPEDGVAVEQRGPGEEFHVSVPLTTPPLSGRYIGYWRLRTAEGQKFGHRVWADVLVTG 2076
KP A FV DVS DGS + FVKTW ++NDG +PA ++V VGGD + ED V+V PG+ VSV + P + RY GYWRL TA+G+++GHR+W D+LV G
Sbjct: 345 KPSAGFVGDVSFPDGSTIRAGDTFVKTWRLKNDGKTRWPAKSRLVCVGGDHLEVGEDFVSVPIVPPGKMIDVSVEMRAPNKAARYTGYWRLCTADGKRYGHRLWVDILVVG 455
BLAST of mRNA_Ecto-sp13_S_contig11767.1518.1 vs. uniprot
Match: W4GNN6_9STRA (UBA domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GNN6_9STRA) HSP 1 Score: 104 bits (259), Expect = 1.130e-19 Identity = 52/111 (46.85%), Postives = 70/111 (63.06%), Query Frame = 1
Query: 1744 KPMARFVTDVSVADGSPLPPNTRFVKTWCMRNDGPVTFPAGCKIVPVGGDLMAGPEDGVAVEQRGPGEEFHVSVPLTTPPLSGRYIGYWRLRTAEGQKFGHRVWADVLVTG 2076
KP A FV DVS DGS + FVKTW ++NDG +PA ++V VGGD + ++ V+V PG+ VSV + P S RY GYWRL TA+G+++G R+W D+LV G
Sbjct: 346 KPSAAFVGDVSFPDGSTIRAGDTFVKTWRLKNDGKTRWPAKSRLVCVGGDHLEVGDNFVSVPIVPPGKMIDVSVDMKAPTKSARYTGYWRLCTADGKRYGQRLWVDILVVG 456 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11767.1518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11767.1518.1 >prot_Ecto-sp13_S_contig11767.1518.1 ID=prot_Ecto-sp13_S_contig11767.1518.1|Name=mRNA_Ecto-sp13_S_contig11767.1518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=699bp MVRFDSEEEFVAAMSYKSWESCLRVEVTAPKPSPSPPAADPEPAPVADATback to top mRNA from alignment at Ecto-sp13_S_contig11767:348..4163- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11767.1518.1 ID=mRNA_Ecto-sp13_S_contig11767.1518.1|Name=mRNA_Ecto-sp13_S_contig11767.1518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3816bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11767:348..4163- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11767:348..4163- >mRNA_Ecto-sp13_S_contig11767.1518.1 ID=mRNA_Ecto-sp13_S_contig11767.1518.1|Name=mRNA_Ecto-sp13_S_contig11767.1518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2097bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11767:348..4163- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |