mRNA_Ecto-sp13_S_contig11762.1515.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11762.1515.1
Unique NamemRNA_Ecto-sp13_S_contig11762.1515.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11762.1515.1 vs. uniprot
Match: D7FUD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD9_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 8.790e-34
Identity = 84/90 (93.33%), Postives = 86/90 (95.56%), Query Frame = -1 
Query:    1 ALLTASEDAAVADAVRSAARVVAAEEASRIDSLSQEAATRTGPAAAGVDVGEDAAAAEAGRTAGADRSPSDSPRTDSRQELKKNPWDSLL 270
            ALLTASEDAAVADAVRSAARVVAAEE+SRIDSLSQEAATRTGPAAAGVDVGEDAAAA AGRT  ADRSPS+SPRTDSRQELKKN WDSLL
Sbjct: 1010 ALLTASEDAAVADAVRSAARVVAAEESSRIDSLSQEAATRTGPAAAGVDVGEDAAAA-AGRTTAADRSPSESPRTDSRQELKKNLWDSLL 1098
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BLAST of mRNA_Ecto-sp13_S_contig11762.1515.1 vs. uniprot
Match: A0A6H5KVQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVQ6_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.630e-18
Identity = 65/89 (73.03%), Postives = 65/89 (73.03%), Query Frame = -1 
Query:    1 LLTASEDAAVADAVRSAARVVAAEEASRIDSLSQEAATRTGPAAAGVDVGEDAAAAEAGRTAGADRSPSDSPRTDSRQELKKNPWDSLL 267
            LLTASEDAAVADAVRSAARVVAAEEA RIDSLSQEAATRTGPAAAG DVGE                     RTDSRQELKKN WDSLL
Sbjct: 1169 LLTASEDAAVADAVRSAARVVAAEEALRIDSLSQEAATRTGPAAAGADVGEXXXXXXXXXXXXXXXXXXXX-RTDSRQELKKNLWDSLL 1256
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11762.1515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUD9_ECTSI8.790e-3493.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVQ6_9PHAE1.630e-1873.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11762contigEcto-sp13_S_contig11762:4438..5000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size564
Hectar predicted targeting categoryother localisation
Exons1
Cds size561
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462619.5929418-CDS-Ecto-sp13_S_contig11762:4437..49981681462619.5929418-CDS-Ecto-sp13_S_contig11762:4437..4998Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11762 4438..4998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11762.1515.1prot_Ecto-sp13_S_contig11762.1515.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11762 4438..4998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11762.1515.1

>prot_Ecto-sp13_S_contig11762.1515.1 ID=prot_Ecto-sp13_S_contig11762.1515.1|Name=mRNA_Ecto-sp13_S_contig11762.1515.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=187bp
QKGVPRVLLQLLARVGPRGVGRGPIGARRPPCFCGSGIFPDIHPGGRRTR
PRSRLLRKAVNPGSFFGSHNPCRGPNGVRHGGVFRCGQQGVLLLLLLLLS
RSCSRCCSGGGCRRRHFFLLPAPSCRRLPLRPDDVSRHERYQRESSGGSF
PPALLSAAIDAAATAAAVLASRIVRRTPRRLPTTAAS
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mRNA from alignment at Ecto-sp13_S_contig11762:4438..5000+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11762.1515.1 ID=mRNA_Ecto-sp13_S_contig11762.1515.1|Name=mRNA_Ecto-sp13_S_contig11762.1515.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=563bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11762:4438..5000+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGAAGGGAGTCCCACGGGTTCTTCTTCAGCTCCTGGCGCGAGTCGGTCC
TCGGGGAGTCGGAAGGGGACCGATCGGCGCCCGCCGTCCGCCCTGCTTCT
GCGGCAGCGGCATCTTCCCCGACATCCACCCCGGCGGCCGCCGGACCCGT
CCTCGTAGCCGCCTCCTGCGAAAGGCTGTCAATCCGGGAAGCTTCTTCGG
CAGCCACAACCCTTGCCGCGGACCTAACGGCGTCCGCCACGGCGGCGTCT
TCCGATGCGGTCAGCAGGGCGTTCTGCTGCTGCTGCTGCTGCTGCTCTCG
CGCTCTTGCAGCCGCTGCTGCAGCGGTGGCGGCTGCCGCAGACGCCACTT
CTTCCTCCTCCCGGCGCCGTCGTGTCGCCGCCTCCCGCTGCGCCCGGACG
ATGTCTCCCGCCACGAGCGATACCAGCGAGAATCCTCCGGCGGCTCGTTT
CCTCCCGCCCTCCTCTCCGCCGCCATTGACGCTGCTGCTACTGCTGCTGC
CGTCCTCGCCTCTCGCATCGTCCGACGAACTCCACGACGACTGCCGACCA
CGGCTGCCTCCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11762:4438..5000+

>mRNA_Ecto-sp13_S_contig11762.1515.1 ID=mRNA_Ecto-sp13_S_contig11762.1515.1|Name=mRNA_Ecto-sp13_S_contig11762.1515.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=561bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11762:4438..5000+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGAAGGGAGTCCCACGGGTTCTTCTTCAGCTCCTGGCGCGAGTCGGTCC
TCGGGGAGTCGGAAGGGGACCGATCGGCGCCCGCCGTCCGCCCTGCTTCT
GCGGCAGCGGCATCTTCCCCGACATCCACCCCGGCGGCCGCCGGACCCGT
CCTCGTAGCCGCCTCCTGCGAAAGGCTGTCAATCCGGGAAGCTTCTTCGG
CAGCCACAACCCTTGCCGCGGACCTAACGGCGTCCGCCACGGCGGCGTCT
TCCGATGCGGTCAGCAGGGCGTTCTGCTGCTGCTGCTGCTGCTGCTCTCG
CGCTCTTGCAGCCGCTGCTGCAGCGGTGGCGGCTGCCGCAGACGCCACTT
CTTCCTCCTCCCGGCGCCGTCGTGTCGCCGCCTCCCGCTGCGCCCGGACG
ATGTCTCCCGCCACGAGCGATACCAGCGAGAATCCTCCGGCGGCTCGTTT
CCTCCCGCCCTCCTCTCCGCCGCCATTGACGCTGCTGCTACTGCTGCTGC
CGTCCTCGCCTCTCGCATCGTCCGACGAACTCCACGACGACTGCCGACCA
CGGCTGCCTCC
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