mRNA_Ecto-sp13_S_contig1176.1511.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1176.1511.1
Unique NamemRNA_Ecto-sp13_S_contig1176.1511.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1176.1511.1 vs. uniprot
Match: D7FPP0_ECTSI (Cryptochrome 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPP0_ECTSI)

HSP 1 Score: 1022 bits (2642), Expect = 0.000e+0
Identity = 515/562 (91.64%), Postives = 524/562 (93.24%), Query Frame = 2
Query:  260 MSSSKAPSSIHWFRKGLRLHDNRALLEACNGTGSLYPLFVLDSDPASPESRAGPLRTTFLLESLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARDKEVGSLAKEAGVQVLIRGTSTLRNLQNYHMLMGKKQGTYLKSYGAFIKLHDNAGPVPDCAPDISEDLPAPGASPDDAEYDRFSIPSLTDLGVEPPEKALKFRGGEREALARLERVMAREDWISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTKKGGSKPPVSLKGQLLWKEFNYFSGYSIPNFDKMVGNPVARQIPWDKDEEKLMAWKEARTGFPWIDAAMTQLKEEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQWLSCSAFFYQASLFALFMPITCTLACFDGGYFRCYSPIAFGKKTDKNGDYIKKYLPVLRKFPSKYIYEPWTAPLQVQRGCGCIIGKDYPKPIVDHTDTSKANMAKMHDAYDAHQEAQAAESHDDAGSGXXXXXXXXX----ARSNARGSAPASRKRVKR 1933
            MSSSK PSSIHWFRKGLRLHDNRALLEACNGT SLYPLFVLDSDPASPESRAGPLRT FLLESLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARD+EVGSLAKEAGVQVLIRGTSTLRNLQNYHMLMGKKQGTYLK+YGAF+KLHDNAGPVPDCAPDIS DLPAPGASPDDAEYDRFSIPSL+DLGVEP  KALKFRGGEREALARLERVMAREDWISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTKKGGSKPPVSLKGQLLWKEFNYFSGYSIP+FDKMVGNPV RQIPWDKDEEKLMAWKEARTGFPWIDAAMTQLK+EGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQWLSCSAFFYQ                    YFRCYSPIAFGKKTD+NGDYIKKYLP LRKFPSKYIYEPWTAPLQVQRGCGCIIGKDYPKPIVDH DTSKANMAKM+DAYDAHQEAQAAESHDD GS XXXXXXXXX    ARS ARG+ PAS KRVKR
Sbjct:    1 MSSSKEPSSIHWFRKGLRLHDNRALLEACNGTASLYPLFVLDSDPASPESRAGPLRTAFLLESLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARDREVGSLAKEAGVQVLIRGTSTLRNLQNYHMLMGKKQGTYLKTYGAFLKLHDNAGPVPDCAPDISGDLPAPGASPDDAEYDRFSIPSLSDLGVEPLAKALKFRGGEREALARLERVMAREDWISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTKKGGSKPPVSLKGQLLWKEFNYFSGYSIPSFDKMVGNPVIRQIPWDKDEEKLMAWKEARTGFPWIDAAMTQLKDEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQWLSCSAFFYQ--------------------YFRCYSPIAFGKKTDQNGDYIKKYLPALRKFPSKYIYEPWTAPLQVQRGCGCIIGKDYPKPIVDHADTSKANMAKMNDAYDAHQEAQAAESHDDGGSXXXXXXXXXXXXXXARSRARGAQPASSKRVKR 542          
BLAST of mRNA_Ecto-sp13_S_contig1176.1511.1 vs. uniprot
Match: A0A835Z8B1_9STRA (DNA photolyase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8B1_9STRA)

HSP 1 Score: 570 bits (1468), Expect = 2.270e-194
Identity = 288/521 (55.28%), Postives = 356/521 (68.33%), Query Frame = 2
Query:  287 IHWFRKGLRLHDNRALLEACNGTGSLYPLFVLDSDPASPESRAGPLRTTFLLESLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARDKEVGSLAKEAGVQVLIRGTSTLRNLQNYHMLMGKKQGTYLKSYGAFIKLHDNAGPVPDCAPDISEDL-PAPGASPDDAEYDRFSIPSLTDLGVEPPEKALKFRGGEREALARLERVMAREDWISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVY-TKKGGSKPPVSLKGQLLWKEFNYFSGYSIPNFDKMVGNPVARQIPWDKDEEKLMAWKEARTGFPWIDAAMTQLKEEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQWLSCSAFFYQASLFALFMPITCTLACFDGGYFRCYSPIAFGKKTDKNGDYIKKYLPVLRKFPSKYIYEPWTAPLQVQRGCGCIIGKDYPKPIVDHTDTSKANMAKMHDAYDAHQEAQAAESHDDA 1843
            IHWFRKGLRLHDN ALL+A      +YP+F+LD   A+P ++ G LR  FLLE+L DLD QL+  GSRL+VV+G P E  P+LF EW+V  LTFE D+EP ++ RD+EV  +A+  GV V    + TL NL  Y    G       KSYG F+KL D+ G VP C   ++ D+ P  G++    E+   ++PSL      P    L + GGE  ALAR++  +AR+ WI+KFEKPKTSPNS+EPSTTVLS Y+  GCLS+R F+H L ++Y    G +KPPVSL GQLLW+EF Y  G+++P+FD+M GNP+ RQ+PWD + + L AW+E+RTG+P+IDA MTQL+ EGWIHHLARHAVACFLTRGDLWQSWE GA VFD+ LLDADWS+N  NW WLSCS+FFYQ                    YFRCYSP+AFGKKTD  G YI+KYLP L+ +P KYIYEPW AP  VQ   GC++G DYPKPIVDH   SK NM +M  AY     AQAA S DDA
Sbjct:    5 IHWFRKGLRLHDNPALLQAAKEAQQVYPVFMLDPHFANP-AKVGQLRYAFLLETLSDLDTQLKGIGSRLYVVQGNPAERFPELFREWSVSLLTFETDTEPYAKKRDQEVCKIAETCGVTVAQHASHTLHNLDRYEAKAGASP--LPKSYGPFLKLFDSLGAVPQCVETVTVDIMPQDGSAVPAGEH---TVPSLDTTPYPPLANPLLYPGGETAALARMQLHLARKQWIAKFEKPKTSPNSLEPSTTVLSPYLKFGCLSSRLFYHKLAEIYKASPGHAKPPVSLHGQLLWREFFYMCGHTVPHFDRMEGNPICRQVPWDSNAQLLAAWEESRTGYPFIDAIMTQLRTEGWIHHLARHAVACFLTRGDLWQSWEAGAVVFDKYLLDADWSVNTANWMWLSCSSFFYQ--------------------YFRCYSPVAFGKKTDPTGAYIRKYLPQLKNYPDKYIYEPWLAPKAVQEKAGCVVGCDYPKPIVDHKQVSKDNMDRMKAAY----AAQAAGSDDDA 495          
BLAST of mRNA_Ecto-sp13_S_contig1176.1511.1 vs. uniprot
Match: A0A3B1IHH9_ASTMX (Cryptochrome-1-like n=6 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1IHH9_ASTMX)

HSP 1 Score: 541 bits (1395), Expect = 2.000e-183
Identity = 277/509 (54.42%), Postives = 347/509 (68.17%), Query Frame = 2
Query:  281 SSIHWFRKGLRLHDNRALLEACNGTGSLYPLFVLDSDPASPES-RAGPLRTTFLLESLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARDKEVGSLAKEAGVQVLIRGTSTLRNLQNY-HMLMGKKQGTYLKSYGAFIKLHDNAGPVPDCAPDISEDLPAPGASPDDAEYDRFSIPSLTDLGVEPPEKA-LKFRGGEREALARLERVMAREDWISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTKKGGSKPPVSLKGQLLWKEFNYFSGYSIPNFDKMVGNPVARQIPWDKDEEKLMAWKEARTGFPWIDAAMTQLKEEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQWLSCSAFFYQASLFALFMPITCTLACFDGGYFRCYSPIAFGKKTDKNGDYIKKYLPVLRKFPSKYIYEPWTAPLQVQRGCGCIIGKDYPKPIVDHTDTSKANMAKMHDAY 1798
            S IHWFRKGLR+HDN AL  A +    +YP+F+LD  P  P++ + G  R  FL+E+L+DLD  LR   SRLFV+RG P EV P+LFEEW V +LTFE DSEP S+ RDKEV  LAK+ GV+++ + + TL NL+       GK   TY++      K+     PVP  AP   ED+        + + + + +P+L +LG +      + + GGE+EAL RL+  M R +W+  FEKP+TSPN+++PSTTVLS Y+  GCLS R FW  L +VY  K  S PPVSL GQLLW+EF Y + Y IPNF+KM GN +  Q+ WD + E L AW+EARTGFP+IDA MTQL++EGWIHHLARHAVACFLTRGDLW SWE+G  VF+ELLLDADW++N  NWQWLS SAFF+Q                    YFR YSPIAFGKKTDKNGDYIKKYLP+L+KFP++YIYEPW AP  +Q   GCI+GKDYP+PIVDH   SK N+ +M  AY
Sbjct:    4 SCIHWFRKGLRVHDNPALKYALHDCKHMYPVFILD--PWFPKNAQVGINRWRFLIEALKDLDSSLRKLNSRLFVIRGVPREVFPRLFEEWKVTRLTFEVDSEPYSQKRDKEVMDLAKQHGVEIITKISHTLYNLERVIEENNGKAPLTYVRFQTVLNKIGPPKRPVP--AP-TREDMKGVSTPSSETDKENYGVPTLDELGQDSTTLGPVLYPGGEQEALRRLDEYMQRTNWVCSFEKPQTSPNALKPSTTVLSPYVKFGCLSARTFWWRLAEVYHGKKHSAPPVSLHGQLLWREFFYTAAYGIPNFNKMEGNTICVQVDWDSNPEHLAAWREARTGFPFIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWALNAGNWQWLSASAFFHQ--------------------YFRVYSPIAFGKKTDKNGDYIKKYLPILKKFPAQYIYEPWKAPKSIQEQAGCIVGKDYPRPIVDHDTISKKNIQRMKAAY 487          
BLAST of mRNA_Ecto-sp13_S_contig1176.1511.1 vs. uniprot
Match: F2U6L6_SALR5 (DNA photolyase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U6L6_SALR5)

HSP 1 Score: 541 bits (1393), Expect = 7.690e-183
Identity = 280/521 (53.74%), Postives = 350/521 (67.18%), Query Frame = 2
Query:  284 SIHWFRKGLRLHDNRALLEACNGTGSLYPLFVLDSDPASPESRAGPLRTTFLLESLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARDKEVGSLAKEAGVQVLIRGTSTLRNLQNYHMLMGKKQGTYLKSYGAFIKLHDNAGPVPDC--APDISEDLPAPGA--SPDDAEYDRFSIPSLTDLGVE--PPEKALKFRGGEREALARLERVMAREDWISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTK-KGGSKPPVSLKGQLLWKEFNYFSGYSIPNFDKMVGNPVARQIPWDKDEEKLMAWKEARTGFPWIDAAMTQLKEEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQWLSCSAFFYQASLFALFMPITCTLACFDGGYFRCYSPIAFGKKTDKNGDYIKKYLPVLRKFPSKYIYEPWTAPLQVQRGCGCIIGKDYPKPIVDHTDTSKANMAKMHDAYDAHQEAQAA 1825
            SIHWFRKGLRLHDN ALL A  G   +YP+FVLD   A PE   G +R  FLLESL+DLD+ LR  GSRL+V++GKP + L + F+EW V +LTFE D+EP ++ RD +   LA++ G++V+     TL + + Y    G      L +Y +F  L    G VP    AP   ED P        D  +  RF +PSL D+G E    E  ++F GGE EAL R+ R + R+ WI+ FEKPKTSPN++EPSTT LS Y+  GCLS R F+H L +VY + +  +KPPVSL GQLLW+EF +  GY++ NFD+M GN + RQI WD ++  L AW+ ARTG+PWIDA MTQL+ EGW+HHLARHAVACFLTRGDL+QSWE GA VFD LL+DADW +N+ NW WLSCS+FFYQ                    YFR YSP+AFGKKTD +G YI+KYLP L+ FP KYIYEPW AP  VQR CGCIIGKDYP+PIVDH + S AN A++   YDA ++A+ A
Sbjct:    7 SIHWFRKGLRLHDNAALLAALKGAKQVYPVFVLDPHFAKPEF-VGVVRYNFLLESLRDLDKSLRTLGSRLYVLKGKPLQALEEKFKEWEVTRLTFERDTEPYAKLRDTQARELAEKHGIEVITTVGHTLHDPEQYIAKAGGADKIPL-TYSSFGTLFRRLGKVPAALSAP-TKEDFPQSSTLVRTDALDDHRFDVPSLKDMGYEWNDDEHEVRFPGGETEALERMRRHLQRKAWIAHFEKPKTSPNTLEPSTTGLSPYLKFGCLSPRLFYHELARVYAEYRDHAKPPVSLHGQLLWREFFHMCGYAVKNFDRMEGNRICRQIDWDTNDALLAAWENARTGYPWIDACMTQLRREGWLHHLARHAVACFLTRGDLYQSWEKGAQVFDRLLVDADWHLNSANWMWLSCSSFFYQ--------------------YFRVYSPVAFGKKTDPSGAYIRKYLPQLKAFPDKYIYEPWKAPPGVQRSCGCIIGKDYPEPIVDHAEVSAANKARIRACYDALKQAEKA 504          
BLAST of mRNA_Ecto-sp13_S_contig1176.1511.1 vs. uniprot
Match: UPI001955C6E5 (cryptochrome circadian regulator 5 n=1 Tax=Pimephales promelas TaxID=90988 RepID=UPI001955C6E5)

HSP 1 Score: 538 bits (1385), Expect = 5.810e-182
Identity = 279/507 (55.03%), Postives = 340/507 (67.06%), Query Frame = 2
Query:  284 SIHWFRKGLRLHDNRALLEACNGTGSLYPLFVLDSDPASPESRAGPLRTTFLLESLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARDKEVGSLAKEAGVQVLIRGTSTLRNLQNY-HMLMGKKQGTYLKSYGAFIKLHDNAGPVPDCAPDISEDLPAPGASPDDAEYDRFSIPSLTDLGVEPPEKALK-FRGGEREALARLERVMAREDWISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTKKGGSKPPVSLKGQLLWKEFNYFSGYSIPNFDKMVGNPVARQIPWDKDEEKLMAWKEARTGFPWIDAAMTQLKEEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQWLSCSAFFYQASLFALFMPITCTLACFDGGYFRCYSPIAFGKKTDKNGDYIKKYLPVLRKFPSKYIYEPWTAPLQVQRGCGCIIGKDYPKPIVDHTDTSKANMAKMHDAY 1798
            S+HWFRKGLRLHDN AL+ A      +YPLF+LD    S  +R G  R  FL+E+L+DLD  L+   SRLFVV G P EVLP+LFE+W + +LTFE D+EP SR+RD+EV  LAKE GV+V+ + + TL N+        GK   TY++       +     PVP  AP   ED+        +   ++F IP+L DLG++        F GGE+EAL RL+  M R  W+ KFEKP+TSPN++ PSTTVLS Y+  GCLS R FW  L  VY  K  S+PPVSL GQLLW+EF Y +   IPNFD+M GNP   Q+ WD   E L AW+EARTGFP+IDA MTQL++EGWIHHLARHAVACFLTRGDLW SWE+G  VF+ELLLDADWS+N  NWQWLS SAFF+Q                    YFR YSP+AFGKKTDKNGDYIKKYLP+L+KFP++YIYEPW AP  +Q   GCI+GKDYP+PIVDH    K N+ +M  AY
Sbjct:    5 SVHWFRKGLRLHDNPALIAALKDCRHIYPLFLLDPW-YSTNTRIGINRWRFLMEALKDLDSSLKKLNSRLFVVSGPPTEVLPKLFEKWEITRLTFEVDTEPYSRSRDEEVMKLAKEYGVEVIPKISHTLYNIDRIIDENNGKTPLTYVRFQSVLKAIGPPKKPVP--AP-TKEDMSGVSTPISEDHEEKFGIPTLEDLGLDASSLGPDLFPGGEQEALRRLDEHMQRPGWVCKFEKPQTSPNALTPSTTVLSPYVRSGCLSARTFWWRLSDVYRAKKHSEPPVSLHGQLLWREFFYTTAVGIPNFDRMEGNPHCVQVDWDNHPEHLAAWREARTGFPFIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDADWSLNAGNWQWLSASAFFHQ--------------------YFRVYSPVAFGKKTDKNGDYIKKYLPLLKKFPAEYIYEPWKAPRSIQERAGCIVGKDYPRPIVDHEVVHKKNIQRMKAAY 487          
BLAST of mRNA_Ecto-sp13_S_contig1176.1511.1 vs. uniprot
Match: H2MAP7_ORYLA (Cryptochrome-1 n=10 Tax=Oryzias TaxID=8089 RepID=H2MAP7_ORYLA)

HSP 1 Score: 536 bits (1380), Expect = 3.660e-181
Identity = 282/508 (55.51%), Postives = 343/508 (67.52%), Query Frame = 2
Query:  287 IHWFRKGLRLHDNRALLEACNGTGSLYPLFVLDSDPASPESRAGPLRTTFLLESLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARDKEVGSLAKEAGVQVLIRGTSTLRNLQNY-HMLMGKKQGTYLKSYGAFIKLHDNAGPVPDCAPDISEDLP--APGASPDDAEYDRFSIPSLTDLGVEPPEKALK-FRGGEREALARLERVMAREDWISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTKKGGSKPPVSLKGQLLWKEFNYFSGYSIPNFDKMVGNPVARQIPWDKDEEKLMAWKEARTGFPWIDAAMTQLKEEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQWLSCSAFFYQASLFALFMPITCTLACFDGGYFRCYSPIAFGKKTDKNGDYIKKYLPVLRKFPSKYIYEPWTAPLQVQRGCGCIIGKDYPKPIVDHTDTSKANMAKMHDAY 1798
            IHWFRKGLRLHDN AL+ A      LYPLF+LD      ++ AG  R  FL+ SLQDLD  LR   SRLFVVRGKPEEVLP+LF +WNV KLT+E D+EP SR+RDK V  LA+E  +QV+ + + TL ++        GK   TY +       L     P+P  AP + ED+   AP +     EY    IPSL +LG++    A + F GGE+EAL RL+  M R  W+  FEKP TSPNS+ PSTTVLS Y++ GCLS R FW  L +VY  K  S PPVSL GQLLW+EF Y +   IPNF+KM GNP   Q+ WD+++E L AW+EARTGFP+IDA MTQL++EGWIHHLARHAVACFLTRGDLW SWE+G  VF++LLLD DW++N  NWQWLS S FF+Q                    +FR YSP+AFGKKTDKNGDYIKKYLP+L+KFP +YIYEPW AP  VQ+  GCI+GKDYPKPI++H   SK N+ +M  AY
Sbjct:    6 IHWFRKGLRLHDNPALMAALRDCKELYPLFILDPY-LYDQNLAGINRLRFLISSLQDLDCSLRKLNSRLFVVRGKPEEVLPKLFTKWNVTKLTYEYDTEPYSRSRDKNVTMLAEEQRIQVIYKISHTLYDIDRIIEENNGKPPLTYNRLRDIVKALGSPKKPIP--APTV-EDMKNIAPFSEKHKPEY---GIPSLEELGLDTSSLAEEIFPGGEQEALRRLDTYMQRPGWVCSFEKPNTSPNSLSPSTTVLSPYVTFGCLSARTFWWRLAEVYQGKKHSDPPVSLHGQLLWREFFYTASVGIPNFNKMTGNPACTQVDWDENQEYLAAWREARTGFPFIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEKLLLDGDWALNAGNWQWLSASTFFHQ--------------------FFRVYSPVAFGKKTDKNGDYIKKYLPILKKFPPQYIYEPWKAPRSVQQAAGCIVGKDYPKPIIEHEVISKKNIQRMKQAY 486          
BLAST of mRNA_Ecto-sp13_S_contig1176.1511.1 vs. uniprot
Match: W7TK49_9STRA (6-4 photolyase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TK49_9STRA)

HSP 1 Score: 538 bits (1386), Expect = 4.900e-181
Identity = 282/537 (52.51%), Postives = 356/537 (66.29%), Query Frame = 2
Query:  284 SIHWFRKGLRLHDNRALLEACNGTGSLYPLFVLDSDPASPESRAGPLRTTFLLESLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARDKEVGSLAKEAGVQVLIRGTSTLRNLQNY-HMLMGKKQGTYLKSYGAFIKLHDNAGPVPDCAPDI-SEDLPAPG------------------ASPDDAEYDR-----FSIPSLTDLGVEPPEKALKFRGGEREALARLERVMAREDWISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTKKGG--SKPPVSLKGQLLWKEFNYFSGYSIPNFDKMVGNPVARQIPWDKDEEKLMAWKEARTGFPWIDAAMTQLKEEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQWLSCSAFFYQASLFALFMPITCTLACFDGGYFRCYSPIAFGKKTDKNGDYIKKYLPVLRKFPSKYIYEPWTAPLQVQRGCGCIIGKDYPKPIVDHTDTSKANMAKMHDAYDAHQE 1813
            S+HWFRKGLRLHDN ALLEAC G   +YP+F+LD   A P+   G LR  F+L+++++LD+ LR  GSRLFVV+G+P E LP+LF EW V KLTFE+D+EP ++ RD+ V  LA E  V V    + TL + + Y   L GK   T    Y +F+KL  + GPV   A  + ++ LP P                   A  ++ E DR     FS+P L+ +G    +    + GGE  ALAR++  +A   +I  FEKPKTSPN++ PSTTVLS Y+ HG LS+R F+H+L  +  +  G  ++PPVSL GQLLW+EF Y  G++ PNFDKMVGNP+ RQIPW K+ E L AW+EARTG+P+IDA MTQL+EEGWIHHLARHA+ACFLTRGDLWQSWE+GA VF++ LLDADWS+N  NW WLS SAFF+Q                    YFR YSP+AFG KTDK G+YI+KYLPVLRK P KYIYEPW AP  VQ   GC++G+DYP P+VDH   SK  M KM  AYDA++E
Sbjct:   50 SLHWFRKGLRLHDNPALLEACEGATHVYPVFILDPHFAKPDV-IGVLRYRFMLQTIKNLDDNLREIGSRLFVVKGQPAEALPRLFREWGVTKLTFESDTEPYAKVRDRHVCELAAEHQVHVQTFPSHTLHDPEAYVARLQGKDVPTV---YQSFVKLFASMGPVAPVASTVDAKRLPPPALEYLSGQDGKKAGQGNGHAGGEEIEEDRTRGDDFSVPGLSGIGYPETDAPTLYPGGETAALARMQEHLANVKYIVTFEKPKTSPNALRPSTTVLSPYLKHGALSSRLFYHSLRSILAQHKGPHTQPPVSLVGQLLWREFFYLQGHATPNFDKMVGNPICRQIPWGKNAELLGAWEEARTGYPFIDACMTQLREEGWIHHLARHALACFLTRGDLWQSWEEGARVFEKYLLDADWSVNTGNWLWLSASAFFHQ--------------------YFRVYSPVAFGAKTDKEGEYIRKYLPVLRKMPIKYIYEPWKAPKGVQETAGCVVGRDYPHPVVDHATVSKQLMGKMKAAYDANKE 562          
BLAST of mRNA_Ecto-sp13_S_contig1176.1511.1 vs. uniprot
Match: Q9I911_DANRE (6-4 photolyase n=4 Tax=Danio rerio TaxID=7955 RepID=Q9I911_DANRE)

HSP 1 Score: 535 bits (1378), Expect = 6.840e-181
Identity = 280/507 (55.23%), Postives = 340/507 (67.06%), Query Frame = 2
Query:  287 IHWFRKGLRLHDNRALLEACNGTGSLYPLFVLDSDPASPES-RAGPLRTTFLLESLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARDKEVGSLAKEAGVQVLIRGTSTLRNLQNY-HMLMGKKQGTYLKSYGAFIKLHDNAGPVPDCAPDISEDLPAPGASPDDAEYDRFSIPSLTDLGVEPPEKALK-FRGGEREALARLERVMAREDWISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTKKGGSKPPVSLKGQLLWKEFNYFSGYSIPNFDKMVGNPVARQIPWDKDEEKLMAWKEARTGFPWIDAAMTQLKEEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQWLSCSAFFYQASLFALFMPITCTLACFDGGYFRCYSPIAFGKKTDKNGDYIKKYLPVLRKFPSKYIYEPWTAPLQVQRGCGCIIGKDYPKPIVDHTDTSKANMAKMHDAY 1798
            IHWFRKGLRLHDN AL+ A      +YPLF+LD  P  P++ R G  R  FL+E+L+DLD  L+   SRLFVVRG P EVLP+LF++W + +LTFE D+EP S++RDKEV  LAKE GV+V  + + TL N+        GK   TY++       +     P+P  AP  +ED+        D   ++F IP+L DLG++        F GGE+EAL RL+  M R +W+ KFEKPKTSPNS+ PSTTVLS Y+  GCLS R FW  L  VY  K  S PPVSL GQLLW+EF Y +   IPNF+KM GN    Q+ WD + E L AW+EARTGFP+ID  MTQL++EGWIHHLARHAVACFLTRGDLW SWE+G  VF+ELLLD+DWS+N  NWQWLS S FF+Q                    YFR YSPIAFGKKTDK+GDYIKKYLPVL+KFP++YIYEPW AP  VQ   GCI+GKDYP+PIVDH    K N+ +M  AY
Sbjct:    6 IHWFRKGLRLHDNPALIAALKDCRHIYPLFLLD--PWFPKNTRIGINRWRFLIEALKDLDSSLKKLNSRLFVVRGSPTEVLPKLFKQWKITRLTFEVDTEPYSQSRDKEVMKLAKEYGVEVTPKISHTLYNIDRIIDENNGKTPMTYIRLQSVVKAMGHPKKPIP--AP-TNEDMRGVSTPLSDDHEEKFGIPTLEDLGLDTSSLGPHLFPGGEQEALRRLDEHMERTNWVCKFEKPKTSPNSLIPSTTVLSPYVRFGCLSARTFWWRLADVYRGKTHSDPPVSLHGQLLWREFFYTTAVGIPNFNKMEGNSACVQVDWDNNPEHLAAWREARTGFPFIDTIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDSDWSLNAGNWQWLSASTFFHQ--------------------YFRVYSPIAFGKKTDKHGDYIKKYLPVLKKFPTEYIYEPWKAPRSVQERAGCIVGKDYPRPIVDHEVVHKKNILRMKAAY 487          
BLAST of mRNA_Ecto-sp13_S_contig1176.1511.1 vs. uniprot
Match: A0A668AA89_9TELE (Cryptochrome-1-like n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A668AA89_9TELE)

HSP 1 Score: 535 bits (1378), Expect = 6.840e-181
Identity = 286/507 (56.41%), Postives = 341/507 (67.26%), Query Frame = 2
Query:  287 IHWFRKGLRLHDNRALLEACNGTGSLYPLFVLDSDPASPES-RAGPLRTTFLLESLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARDKEVGSLAKEAGVQVLIRGTSTLRNLQNY-HMLMGKKQGTYLKSYGAFIKLHDNAGPVPDCAPDISEDLPAPGASPDDAEYDRFSIPSLTDLGVEPPEKAL-KFRGGEREALARLERVMAREDWISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTKKGGSKPPVSLKGQLLWKEFNYFSGYSIPNFDKMVGNPVARQIPWDKDEEKLMAWKEARTGFPWIDAAMTQLKEEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQWLSCSAFFYQASLFALFMPITCTLACFDGGYFRCYSPIAFGKKTDKNGDYIKKYLPVLRKFPSKYIYEPWTAPLQVQRGCGCIIGKDYPKPIVDHTDTSKANMAKMHDAY 1798
            IHWFRKGLRLHDN AL+ A      LYP+FVLD  P S  S   G  R  FL+ +L+DLD  LR   SRLFVVRGKPEEV P+LF +WNV KLT+E D+EP S + DK+V +LAKE GV+V+ + + TL N+        GK   TY +       L     PVP  AP I +D+        D    ++ IP+L +LG +    +  KF GGE+EAL RL+  M R  WI  FEKP+TSPNS+ PSTTVLS Y++ GCLS R FW  L  VY  K  S PPVSL GQLLW+EF Y +   IPNF+KMVGNPV  QI WD + E L AW+EARTGFP+IDA MTQL++EGWIHHLARHAVACFLTRGDLW SWE+G  VF+ELLLD DW++N  NWQWLS SAFF+Q                    YFR YSPIAFGKKTDKNGDYIKKYLP+L+KFP++YIYEPW AP  VQ+  GCI+GKDYP P+V+H   SK N+ +M  AY
Sbjct:    6 IHWFRKGLRLHDNPALVAALRECKELYPVFVLD--PYSYNSTHVGINRWRFLIGALKDLDCSLRKLNSRLFVVRGKPEEVFPKLFNKWNVTKLTYEYDTEPYSLSTDKKVTTLAKEHGVEVIYKISHTLYNIDRIIEENNGKAPLTYNRLQSVVKTLGPPKRPVP--APTI-DDMKGVKTPYTDKHEKKYGIPTLEELGYDTASLSEEKFPGGEQEALKRLDEHMKRTGWICSFEKPQTSPNSLSPSTTVLSPYVTFGCLSARTFWWRLTDVYQGKKHSDPPVSLHGQLLWREFFYTASVGIPNFNKMVGNPVCTQIDWDTNTEYLAAWREARTGFPFIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDGDWALNAGNWQWLSASAFFHQ--------------------YFRVYSPIAFGKKTDKNGDYIKKYLPLLKKFPAQYIYEPWKAPRSVQQAAGCIVGKDYPHPVVEHEVISKKNIQRMKIAY 487          
BLAST of mRNA_Ecto-sp13_S_contig1176.1511.1 vs. uniprot
Match: A0A3Q2CCJ5_CYPVA (Cryptochrome-1-like n=2 Tax=Cyprinodon TaxID=28741 RepID=A0A3Q2CCJ5_CYPVA)

HSP 1 Score: 532 bits (1371), Expect = 8.320e-180
Identity = 273/506 (53.95%), Postives = 339/506 (67.00%), Query Frame = 2
Query:  287 IHWFRKGLRLHDNRALLEACNGTGSLYPLFVLDSDPASPESRAGPLRTTFLLESLQDLDEQLRAKGSRLFVVRGKPEEVLPQLFEEWNVKKLTFEADSEPRSRARDKEVGSLAKEAGVQVLIRGTSTLRNLQNY-HMLMGKKQGTYLKSYGAFIKLHDNAGPVPDCAPDISEDLPAPGASPDDAEYDRFSIPSLTDLGVEPPEKALK-FRGGEREALARLERVMAREDWISKFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTKKGGSKPPVSLKGQLLWKEFNYFSGYSIPNFDKMVGNPVARQIPWDKDEEKLMAWKEARTGFPWIDAAMTQLKEEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDELLLDADWSINNFNWQWLSCSAFFYQASLFALFMPITCTLACFDGGYFRCYSPIAFGKKTDKNGDYIKKYLPVLRKFPSKYIYEPWTAPLQVQRGCGCIIGKDYPKPIVDHTDTSKANMAKMHDAY 1798
            IHWFRKGLRLHDN AL+ A      LYP+F++D +  S E   G  R  FL+ +L+DLD  LR   SRLFV+RGKPEEV P+LF +W V KLT+E D+EP S +RD++V SLAKE G+ V+ + + TL N++       GK   TY +      KL     P+P    D  +D+  P +  D+ +Y    IP+L + G++      + F GGE+EAL RL+  M +  W+  FEKP+TSPNS+ PSTTVLS Y++ GCLS R FW  L +VY  K  S PPVSL GQLLW+EF Y     IPNF+KM GN V  Q+ WD +++ L AW+EARTGFP+IDA MTQL++EGWIHHLARHAVACFLTRGDLW SWE+G  VF+ELLLD DW++N  NWQWLS SAFF+Q                    +FR YSPIAFGKKTDKNGDYIKKYLP+L KFP +YIYEPW AP  VQ+  GCI+GKDYP PIV H   SK N+ +M +AY
Sbjct:    6 IHWFRKGLRLHDNPALIAALKDCKELYPVFIMDPNLHSTE--VGINRWRFLIGALKDLDSSLRKLNSRLFVLRGKPEEVFPKLFSKWKVTKLTYEYDTEPYSLSRDEKVTSLAKETGIDVIYKISHTLFNIERIIEENDGKPPLTYKRLQAIVAKLGPPKKPIPAPTLDDMKDVKTPCSEKDEKKY---GIPTLEEFGLDSTSLGEELFPGGEQEALRRLDEHMKKTGWVCSFEKPQTSPNSLSPSTTVLSPYVTFGCLSARTFWWRLTEVYRGKKHSDPPVSLHGQLLWREFFYTCSLGIPNFNKMKGNTVCTQVDWDTNQDYLAAWREARTGFPFIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDGDWALNAGNWQWLSASAFFHQ--------------------FFRVYSPIAFGKKTDKNGDYIKKYLPLLEKFPPQYIYEPWKAPRSVQQAAGCIVGKDYPHPIVQHEQVSKKNIQRMKEAY 486          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1176.1511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPP0_ECTSI0.000e+091.64Cryptochrome 1 n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A835Z8B1_9STRA2.270e-19455.28DNA photolyase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A3B1IHH9_ASTMX2.000e-18354.42Cryptochrome-1-like n=6 Tax=Astyanax mexicanus Tax... [more]
F2U6L6_SALR57.690e-18353.74DNA photolyase n=1 Tax=Salpingoeca rosetta (strain... [more]
UPI001955C6E55.810e-18255.03cryptochrome circadian regulator 5 n=1 Tax=Pimepha... [more]
H2MAP7_ORYLA3.660e-18155.51Cryptochrome-1 n=10 Tax=Oryzias TaxID=8089 RepID=H... [more]
W7TK49_9STRA4.900e-18152.516-4 photolyase n=3 Tax=Monodopsidaceae TaxID=42507... [more]
Q9I911_DANRE6.840e-18155.236-4 photolyase n=4 Tax=Danio rerio TaxID=7955 RepI... [more]
A0A668AA89_9TELE6.840e-18156.41Cryptochrome-1-like n=1 Tax=Myripristis murdjan Ta... [more]
A0A3Q2CCJ5_CYPVA8.320e-18053.95Cryptochrome-1-like n=2 Tax=Cyprinodon TaxID=28741... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1176contigEcto-sp13_S_contig1176:936..8150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score1027.3
Seed ortholog evalue2.9e-297
Seed eggNOG ortholog2880.D7FPP0
Preferred nameCRY1
Model size2197
KEGG koko:K02295,ko:K10426
KEGG Pathwayko04710,ko04962,ko05016,map04710,map04962,map05016
Hectar predicted targeting categorymitochondrion
GOsGO:0000060,GO:0000122,GO:0000166,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0000988,GO:0000989,GO:0001012,GO:0001067,GO:0001750,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003697,GO:0003824,GO:0003904,GO:0003913,GO:0003914,GO:0004888,GO:0004930,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005641,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0005929,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006606,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0006975,GO:0007154,GO:0007165,GO:0007186,GO:0007600,GO:0007602,GO:0007610,GO:0007622,GO:0007623,GO:0007626,GO:0008020,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0008277,GO:0009058,GO:0009314,GO:0009411,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009584,GO:0009588,GO:0009605,GO:0009628,GO:0009629,GO:0009637,GO:0009648,GO:0009649,GO:0009719,GO:0009725,GO:0009785,GO:0009881,GO:0009882,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010558,GO:0010563,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0010817,GO:0010876,GO:0010921,GO:0010923,GO:0010966,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016051,GO:0016310,GO:0016604,GO:0016607,GO:0016829,GO:0016830,GO:0017038,GO:0019219,GO:0019220,GO:0019222,GO:0019318,GO:0019319,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0019902,GO:0019915,GO:0023051,GO:0023052,GO:0023057,GO:0030522,GO:0031090,GO:0031253,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032269,GO:0032368,GO:0032369,GO:0032501,GO:0032515,GO:0032868,GO:0032879,GO:0032922,GO:0032991,GO:0033036,GO:0033143,GO:0033144,GO:0033365,GO:0033500,GO:0033554,GO:0033762,GO:0034504,GO:0034613,GO:0035257,GO:0035303,GO:0035304,GO:0035305,GO:0035308,GO:0036094,GO:0036211,GO:0038023,GO:0040011,GO:0042221,GO:0042330,GO:0042332,GO:0042592,GO:0042593,GO:0042622,GO:0042749,GO:0042752,GO:0042754,GO:0042826,GO:0042886,GO:0042995,GO:0043005,GO:0043086,GO:0043153,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043269,GO:0043412,GO:0043434,GO:0043565,GO:0043666,GO:0044057,GO:0044060,GO:0044070,GO:0044092,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044441,GO:0044444,GO:0044446,GO:0044451,GO:0044459,GO:0044463,GO:0044464,GO:0045184,GO:0045187,GO:0045475,GO:0045744,GO:0045892,GO:0045934,GO:0045936,GO:0046364,GO:0046883,GO:0046888,GO:0046907,GO:0048037,GO:0048511,GO:0048512,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048878,GO:0050660,GO:0050662,GO:0050789,GO:0050790,GO:0050794,GO:0050795,GO:0050877,GO:0050896,GO:0050906,GO:0050953,GO:0050958,GO:0050962,GO:0050980,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051169,GO:0051170,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051235,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051336,GO:0051346,GO:0051427,GO:0051606,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0060089,GO:0060170,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070888,GO:0071000,GO:0071214,GO:0071478,GO:0071482,GO:0071483,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0071949,GO:0072594,GO:0080090,GO:0080134,GO:0080135,GO:0097159,GO:0097381,GO:0097458,GO:0097730,GO:0097731,GO:0097733,GO:0098588,GO:0098590,GO:0104004,GO:0120025,GO:0120038,GO:0140097,GO:0140110,GO:1901265,GO:1901363,GO:1901564,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:1901976,GO:1902679,GO:1903320,GO:1903321,GO:1903506,GO:1903507,GO:1903530,GO:1903531,GO:1905952,GO:1905953,GO:1990837,GO:2000001,GO:2000112,GO:2000113,GO:2000118,GO:2000322,GO:2000323,GO:2000831,GO:2000832,GO:2000846,GO:2000847,GO:2000849,GO:2000850,GO:2001020,GO:2001141
Exons10
EggNOG free text desc.DNA photolyase activity
EggNOG OGsCOG0415@1,KOG0133@2759
Cds size1863
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko03400,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1176.1511.1prot_Ecto-sp13_S_contig1176.1511.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1176 1197..8077 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462619.18924-UTR-Ecto-sp13_S_contig1176:935..11961681462619.18924-UTR-Ecto-sp13_S_contig1176:935..1196Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1176 936..1196 -
1681462619.304156-UTR-Ecto-sp13_S_contig1176:8077..81501681462619.304156-UTR-Ecto-sp13_S_contig1176:8077..8150Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1176 8078..8150 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462619.1992123-CDS-Ecto-sp13_S_contig1176:1196..14391681462619.1992123-CDS-Ecto-sp13_S_contig1176:1196..1439Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1176 1197..1439 -
1681462619.2070749-CDS-Ecto-sp13_S_contig1176:1877..20121681462619.2070749-CDS-Ecto-sp13_S_contig1176:1877..2012Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1176 1878..2012 -
1681462619.214895-CDS-Ecto-sp13_S_contig1176:2519..27511681462619.214895-CDS-Ecto-sp13_S_contig1176:2519..2751Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1176 2520..2751 -
1681462619.222706-CDS-Ecto-sp13_S_contig1176:3411..35161681462619.222706-CDS-Ecto-sp13_S_contig1176:3411..3516Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1176 3412..3516 -
1681462619.2370071-CDS-Ecto-sp13_S_contig1176:3970..40561681462619.2370071-CDS-Ecto-sp13_S_contig1176:3970..4056Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1176 3971..4056 -
1681462619.2471318-CDS-Ecto-sp13_S_contig1176:4650..48331681462619.2471318-CDS-Ecto-sp13_S_contig1176:4650..4833Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1176 4651..4833 -
1681462619.2552123-CDS-Ecto-sp13_S_contig1176:5185..53891681462619.2552123-CDS-Ecto-sp13_S_contig1176:5185..5389Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1176 5186..5389 -
1681462619.2712214-CDS-Ecto-sp13_S_contig1176:5924..60621681462619.2712214-CDS-Ecto-sp13_S_contig1176:5924..6062Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1176 5925..6062 -
1681462619.286826-CDS-Ecto-sp13_S_contig1176:6335..65191681462619.286826-CDS-Ecto-sp13_S_contig1176:6335..6519Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1176 6336..6519 -
1681462619.2950914-CDS-Ecto-sp13_S_contig1176:7724..80771681462619.2950914-CDS-Ecto-sp13_S_contig1176:7724..8077Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1176 7725..8077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1176.1511.1

>prot_Ecto-sp13_S_contig1176.1511.1 ID=prot_Ecto-sp13_S_contig1176.1511.1|Name=mRNA_Ecto-sp13_S_contig1176.1511.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=621bp
MQTRGALLGFLLIRPNCSVSRVGTAVVRPAPRTGAINLLHRTRASATSAA
SASAVGATIAGKMSSSKAPSSIHWFRKGLRLHDNRALLEACNGTGSLYPL
FVLDSDPASPESRAGPLRTTFLLESLQDLDEQLRAKGSRLFVVRGKPEEV
LPQLFEEWNVKKLTFEADSEPRSRARDKEVGSLAKEAGVQVLIRGTSTLR
NLQNYHMLMGKKQGTYLKSYGAFIKLHDNAGPVPDCAPDISEDLPAPGAS
PDDAEYDRFSIPSLTDLGVEPPEKALKFRGGEREALARLERVMAREDWIS
KFEKPKTSPNSIEPSTTVLSMYISHGCLSTRRFWHALCKVYTKKGGSKPP
VSLKGQLLWKEFNYFSGYSIPNFDKMVGNPVARQIPWDKDEEKLMAWKEA
RTGFPWIDAAMTQLKEEGWIHHLARHAVACFLTRGDLWQSWEDGAAVFDE
LLLDADWSINNFNWQWLSCSAFFYQASLFALFMPITCTLACFDGGYFRCY
SPIAFGKKTDKNGDYIKKYLPVLRKFPSKYIYEPWTAPLQVQRGCGCIIG
KDYPKPIVDHTDTSKANMAKMHDAYDAHQEAQAAESHDDAGSGSGGGGSG
GGARSNARGSAPASRKRVKR*
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mRNA from alignment at Ecto-sp13_S_contig1176:936..8150-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1176.1511.1 ID=mRNA_Ecto-sp13_S_contig1176.1511.1|Name=mRNA_Ecto-sp13_S_contig1176.1511.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7215bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1176:936..8150- (Ectocarpus species13 EcNAP12_S_4_19m)
CATCGATCGCCCTCGTCGTCGCTCTCTCTCTCTCTCCACACACACACTGA GATCACAGCAGGTTGTATGCTGCATGCAAACGCGCGGAGCACTCTTAGGC TTCCTACTGATACGCCCAAACTGTTCTGTATCTCGTGTGGGTACGGCGGT AGTACGCCCTGCTCCCCGAACAGGCGCCATCAACCTATTGCACCGCACCC GAGCTAGCGCTACCTCCGCTGCTTCCGCTTCGGCTGTTGGTGCTACCATT GCTGGCAAGATGAGTTCTTCAAAGGCGCCCTCCTCCATTCATTGGTTCAG AAAGGGGCTGCGCTTGCACGACAACCGTGCTTTGCTGGAAGCGTGTAATG GCACAGGGTCCCTGTACCCGTTGTTTGTGTTGGACTCCGACCCTGCATCA CCCGAGTCGAGGGCGGGCCCTCTGAGGTGAGGCACGGGCACTCACCTAGC GGGGAGCACTGATTATAGGATTGGTTTTCGAGTGAGGTTTTCATCGTTTG CGCCAGAGCAGCAGCCGCTGCTGTCGGTGTTGTATTCCCATCACACTGTG GAAAGTGTGAAGAGCATAATTGAGTCAGTGCACACTCTGAAGATGACGTC ACACCGCGAACCGTCAACGGTGCTCTCAAAAGATTGGAACAAGGAAATTT CATGAACCTCGAAGTTGCATGAGCCTTATTCCAGTTGGGACGGAACACAG AACTTCGGATATCCGAGCAATGTTTCACACGAACCAAGAACATGATGTCG TGGCGCTTTTCCACATCATTCAACATAGGGGCCTCTCCTGGGTACTTGCC ATGCCGATGGGGGGTTATGACACAGATCTGAGTCATTGCACACACAGGTC CGGAATTTGGCGATGACGACAAGACCATTCGAATGTTTGCACTGCTGTTA GCGGGCCCAGCAGCCCATCGTGCAGTAACAACTACTTTCGGCGGAATTCA GTTTTGCAATCAATGCATAATGTCATGGTCTGAAATACAACAGCGGCCCC GCAGACAAGAAACGTCAGATGCGGGTCGAGCCTCAATCGGTTAGTTTGTG TCCAAGGACCAGCCGAAGTAGTTTGTTTCCTTAAAAGGCATTCCTTGTTC CTTTGGAACGTCGTCTTCCCAATCCTCTTATGTCTCACTTGCATATTTTC TTTTTTGGCTCAACGATGGTGACATAACAAATGGTCATCATGCCGCTTAA CCAGAAAGTAAGCTCTGTGTGGCGAAAATAACCTCTCTCTCCCCAACTTT CCCCCCAAAAAAATGCACTGTTAAGGTAGGTAGGGGGGTGGGAACACCGA AGTAGCAGCAGTGGGGCGTTTCTTGTTGGGCACGCTCTTCCAGCTACCCC TTGTTTCCGTATGTCTTGGGGGTATCGCACCATCATGTTTCTTGTGGGGA CATTTATTATGCTGTGGCCGAGAGAGGTGTGTTTCTTAGCCCGTTTTTCT TATTTTTCGTAAAATTTGAGCCTTTTTTTCTGAACAGAAGTTGTCTCAAC TGCAGGCCCGTACTGTTTGCGAAACTTCGCAGATTTTCCTGCACGATTTC GATAGGTAAATACACAAATGCCTGTTGCACCTCCGTGACCGTGCCCTTCT CGTATGTAAACACACAACCATCGTTCTCGAGGACGACGTTTCTTCTGGAA TCGCTCCAAGATCTCGATGAGCAGCTACGTGCGAAGGGGTCACGCCTCTT CGTCGTCCGTGGAAAACCGGAGGAAGTTCTTCCGCAGCTCTTCGAGGAGT GGAACGTCAAGAAGTTGACCTTCGAGGCGGACTCGGAGCCGCGATCTCGC GCGCGCGATAAGGAGGTGGGTGCTGTCGACCCTGTCGTTGAAAGTGGGCT GGTATAGGTTCATTTTCCGTTGTTATGCCGTTGAACTCTCACCCAACACG TCCGGATGAATGAATCGAAGTCACCCCTCTTGCAAGTGGGTGGGTTGATG CCCTAGCCGGTACAAACTCTACCTCCGGTGTTAAAGTTTGCTGCCCGATA AGCCAAATGACGTGTCACCCAAGCCTATACTCAAGTGTCATGCCGTTGCA ACATCTATTGCATTTTGTTTGTCGATTTGATCGACAAGGTGGGCTCCCTG GCGAAGGAAGCTGGGGTTCAGGTTTTGATCCGGGGAACGTCCACTCTGCG AAACCTTCAAAACTACCACATGCTCATGGGCAAGAAGCAGGGCACATACC TGAAGAGCTACGGGGCTTTCATAAAGGTCGGGCGGTGAAGCACTCTTTTT GCCACCAGTCTTTTGAGTTTCTCCCTCGAGCTTTCGGCAAGCAAGCGTAT TTCCTTTTTGGTGGGGACGATCTTTGCACAACACTGGAAATCGTACTTTT TCTATTTTCAACGATCTTTGCATCCTGAGCCGAAAATAGGAAATCATAGT TTTTGGCGATATTTGCACAAAACAGGGAAGCGCTCTTTAGTTTCGAACGA TCTTTGCAACTTCAGCGGAAACCAGGAAACCGTAGCTTTGACGATCTTTG CAGCTTGACGGAAACCAGGATTTTCGAGTTAACTGAATCTCGTCGTTGGG TGCTAGCAAAGCTGCCTCCTTTCTTGCTGTGCTATCGAGCGAACCCTTAC CGTGTGTAACCCCGGAAGCTCGCAAAAGCTGTGCGTGCCCTATGGTCAGT GCGCACAAGCGAAGCAACCCTCGCTTTCTCCTTGTCGCCTCTTACGACGC CCCTTCGCCGCGGCGATTATCTCCCTCCCTCCCTCTGTTTCTTACCCTCG CCTCTCAACAGCTGCATGACAACGCGGGCCCTGTGCCCGATTGCGCCCCC GACATCTCCGAAGACTTGCCAGCCCCCGGAGCATCGCCGGACGATGCCGA GTACGACCGCTTCTCGATTCCCTCTCTGACGGACCTGGGCGTGGAGCCGC CGGAAAAGGCGTTGAAATTTCGAGGGGGCGAGAGAGAAGCCCTTGCCAGG CTCGAACGCGTCATGGTGAGTGATGATCATGACAAGGGAGTCAAGGCTGT TCAAAGAAATAAACGGTCGTTGATATGCGCGGCCGGGAGCGTCGCAGGCA CTCGGCAACCACATGCAATGTTCTACATCTCAAAAACAGAGCGCGAGGGG TGGCGTGTCTATTGAGCGAACGGTGATGGTGTGTGTGCTGGCTGAGATGT GCCACGGGCACGCGTCTTTGCCCTCCCACACTGGTTGAGTACCGTGGATA TCTTTTTGGCGGGAAGGCGGTGAATATTTTCTGATTCTCACACCCTTCTC AGCCGCTGGACGGCTAACGTTTGCCTCCTTCCGTCTGAATACGTGATGCG CTATGTGGCTGAGCCAGGCAAGGGAGGACTGGATATCAAAGTTCGAGAAG CCCAAAACCTCTCCGAACTCGATCGAGCCCAGCACAACCGTCCTCAGCAT GTACATTTCTCATGGATGCTTGAGCACGCGGAGGTTTTGGCACGCTCTCT GCAAGGTTTATACCAAAAAGGGTGGCTCCAAGCCTCCGGTTTCGCTCAAG GTGATTTGTACCGCACCGTGCCCCGCAGCGTGGCGGGCGACGCGGCCTTG GATTTTTCTCTCGCCGTGTGATGTTGGCCGAATCCTCACGCGAAACATAC GAGCGAATGACTGGCTGTCCGACTTTGTCTTCATCGCATGATGTTGGCTT AGCCGTGAGGTGATGGGTGCAAAAGAACGTGTCCCACTTCCCAGGTGGTT GTACCGCGGAGTCAGGCGCTTGCAGCTTTCGGACCCTCCCAGTGCACCCC GCGCTCTTCCAGTCGTTGCTCTAGTCGTCGGTCCTCTGGTGTGCAGCAGA CCGAGCAGCAAAGTTCCCTAATCGAGACCAACTGGAACTAGTGTTCAGGT TTGTATTTGGGCCCGCTACGGCAGTCGTTTGCGACTATGTTGATAAATGC GTCTCGTCTCGCAACCGTGACCCTCGTATTCCAGATTTTGTCTGTGCGAG AAAACCTCTCCCAAATCGAGAATTCTAAGGGGACAACATGCTCACATGTT CTCCGCAACTCGGGTCACTGTGGCTCTGGAGTCTAGACGCGTTTTTGTTG ATACATACAACGTAATGCCTCCCCATCATTGCTCCGTTAAACAGGGCCAA CTACTGTGGAAAGAGTTTAACTATTTCAGTGGGTACTCAATCCCTAACTT CGACAAGATGGTCGGCAATCCCGTCGCCAGGTAGGGATAGGTCTTCGTCC AAGTTTGAAAAGGCAAACGCGTGTTTGGCGCTGCCACCATGCGTTTGATA GCGTCCTTGCCAGTGCTTGCCTAAATTTCATCACCATGAAGATTGAACCG TTCCTTTCCTTGGTCCGGCGTGAAGTCGATGTGTTGCCTCCACATGAATT ATCGCTTGCACGTGGTTTGTGTATGATATGATAAAGAAGCCCAATTCGTG TGGCTGCACCTAGACAAGCGTCCAAGAGGTTGCGACGCTACCAGGTGGAC GACTGAGCCCCGACCCTTGTGCGCCCAAGGTGCAAGACTCTTCATCATTT TGCTGCAACCCCCTCCCACAGTTTGATTTTCAGGGGTCAGGAACACGTGC ACTCCATTATATTTTGTACATGGGACGTAGTCAGGGTTCTTGCGCCTGCT TTGGTCCCGCCATGGTTTTTCTGGAGCACTGCAGGCAGATACCGTGGGAC AAGGACGAGGAGAAGCTGATGGCGTGGAAAGAGGCCAGAACCGGATTCCC TTGGATCGACGCCGCTATGACGCAGCTCAAAGAAGAAGGGTGTGTATTCG TTTTCGGGAACATACGCACTTCCAAGAATATTCTAAGTTTATCCCAAAAT AATTCACACCGATGAGCGCCGTAGTCTCTAGTTCATGGTTGAATGCCTCT AGAATCCCTCGGGGCAATCACGTTGCTTCGAAGCACGCGCTTTTTGGTCT TTCCGTTGGTGCTGCTGTTGGCGAAGAACTGATCATGTCACACCGGCCGG GCGCGCCAATCGCACCGCATCTTGGCTTCTCCTCCATTGACACCGATGGC GCAGCAAAAATGACCGCTCAAGTGATGGCCTCATACTGCTCTACACATCA CAACGATGGAAATTAGGTCGCCCCGATGATTCAGCCGACGCCGCTTACCC CTTCAGTAAGGGGGTGAATATGATCCTCAACATATGAAATGGTCTCCAAT TCTCCCAGCTACTGAACGCATGTTCTTCGTAAAGCAGCGGGCCCTTGGTA GAGAACAGGAACGGCTGGGTTGTTATTTCTTTGTCGAAAAACGAAGGAGA AGAACGCAGAGAAACCTTGTCCATGATCCCGTGCCGAAAGACTTCCCAAT GGGAGACTTTGGACAATGGTGGCAAGGCGAGGACCGGAATGATTCGTATT TGACAACTTAACGCTCTTGCCAATTTGCTCTATTGTGCACCGCTCCCAGG TGGATTCACCACCTTGCTCGCCACGCTGTGGCTTGCTTCCTGACGCGGGG TGACCTGTGGCAGAGCTGGGAGGACGGAGCTGCCGTTTTCGACGAGCTCT TACTCGACGCGGATTGGAGCATCAACAACTTCAACTGGCAGTGGTTGAGC TGTTCGGCCTTTTTCTACCAGGCAAGCCTCTTTGCGCTTTTCATGCCGAT CACTTGTACCCTAGCGTGCTTCGATGGCGGTGTGGTGTGATTCGTATTGT CGTCTCATAGTCACCTACACACGGTGCCACTGTTGTCATGTGTTAAGTAC CCTTGTGACGAGCAGTCCTGCCCAGGAGAGTCTAAAAGCGTTTTTTCGTG GGCGCGCAAGGGGTGAGTCGAAGGTGTCTACGTCTACGAAGAAGCCCGCG AGAGGAAATTCGCCTAGCCCGTAGGAGCGATAGATTGCGCATATTTTCGT GCTATTGATGTGCTCTCGTGACCACGGACTCATGGAGGTACTGTACCTTG GGTGGCTTGGTGATCTTTAACAAAGTTTAACAAGTGGCAGACTTATACGC TCATTCTTGCTATTTAGCGTTGTGATAGCTCAATGTTTCAGGTGTCCGGT GCCACTACCTAACGTCAGTAAGAGTATACCGACCACCAGAGAAAAGCCGA GTCATTGGTGTTTGCAGGCGTCATTTCATTCCCGTTTAACACATATTTTG TCGTTTCGTGTATGTACATGTTTCTCTTTCCCGTGCAGTACTTCAGGTGC TATAGTCCAATTGCCTTTGGAAAGAAGACAGACAAAAATGGGGACTACAT CAAGAAGTACTTGCCAGTCCTCCGAAAGTTTCCGTCGAAGTACATCTACG AGCCATGGACGGCACCGTTACAGGTACGGCTGGTGACTTAACGGTTGCCA CAACGAGAGCATGTGTAGTCGATGACCGGCGTGCTTGGGGACGTGCTCGA TTGGCTGAACCGTTGTGGTGAATATTGCAGCTGCCATCGTGATCGATGAA TTGACGGGTATTAAAAACCTGCCGGGGAGTACAAAGTGGAATTGTAACGG CATGTTTTCCTCTCCCTTCAACAGAAAGATTTGCCGCAGATTATTGTACC ACTGCCTTGGAATTCACCTGTTGGATGTAGTCTACACGTAAACGGGTTTT GAGGGTCGTCAGCAGGACCGATAGGTAGTGCTGGATGGATGCCCTGGCCC CACTCTTTCATGATACCTTTTTCGCCTCATCTAGCCTCTTTGTTTATTCG CACTCCAACGGGCTCCTCAAAAGAGATACCCTCTAACAGGCCATTTTTCC ACAAATTTCAGGTGCAACGAGGTTGCGGATGCATCATCGGCAAGGACTAC CCGAAGCCCATCGTCGACCACACCGACACCTCCAAGGCCAACATGGCCAA GATGCACGACGCTTACGATGCCCACCAGGAGGCGCAGGCTGCAGAATCCC ACGATGACGCAGGCAGTGGCAGTGGCGGTGGTGGTAGTGGTGGCGGAGCA AGGTCGAATGCTCGAGGATCAGCGCCGGCGTCACGCAAGAGAGTCAAGCG TTGAGGTTGAGGGACGCACCCGTAAAATTCTTAGGCCAGTGTTTTCGTGA GATCGACTTCGTTTTGGGGCGCCTTTTCCAGATTGGGTGGCATCGTTCTA CGATTGAATTTGATACGGGCGTCAACATTGTCGCACACAACGGTGATTTA CTTACGGTGAGGTGGAGTACAAATCGCTTGCTCGATATCACTTCTTGATA AAGTCACACACCCTGAGGTGATTTGGTGGCTGCGGGGCGAATGGCAATGA TATGTGGTGCTACGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1176:936..8150-

>mRNA_Ecto-sp13_S_contig1176.1511.1 ID=mRNA_Ecto-sp13_S_contig1176.1511.1|Name=mRNA_Ecto-sp13_S_contig1176.1511.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1863bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1176:936..8150- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAAACGCGCGGAGCACTCTTAGGCTTCCTACTGATACGCCCAAACTG
TTCTGTATCTCGTGTGGGTACGGCGGTAGTACGCCCTGCTCCCCGAACAG
GCGCCATCAACCTATTGCACCGCACCCGAGCTAGCGCTACCTCCGCTGCT
TCCGCTTCGGCTGTTGGTGCTACCATTGCTGGCAAGATGAGTTCTTCAAA
GGCGCCCTCCTCCATTCATTGGTTCAGAAAGGGGCTGCGCTTGCACGACA
ACCGTGCTTTGCTGGAAGCGTGTAATGGCACAGGGTCCCTGTACCCGTTG
TTTGTGTTGGACTCCGACCCTGCATCACCCGAGTCGAGGGCGGGCCCTCT
GAGGACGACGTTTCTTCTGGAATCGCTCCAAGATCTCGATGAGCAGCTAC
GTGCGAAGGGGTCACGCCTCTTCGTCGTCCGTGGAAAACCGGAGGAAGTT
CTTCCGCAGCTCTTCGAGGAGTGGAACGTCAAGAAGTTGACCTTCGAGGC
GGACTCGGAGCCGCGATCTCGCGCGCGCGATAAGGAGGTGGGCTCCCTGG
CGAAGGAAGCTGGGGTTCAGGTTTTGATCCGGGGAACGTCCACTCTGCGA
AACCTTCAAAACTACCACATGCTCATGGGCAAGAAGCAGGGCACATACCT
GAAGAGCTACGGGGCTTTCATAAAGCTGCATGACAACGCGGGCCCTGTGC
CCGATTGCGCCCCCGACATCTCCGAAGACTTGCCAGCCCCCGGAGCATCG
CCGGACGATGCCGAGTACGACCGCTTCTCGATTCCCTCTCTGACGGACCT
GGGCGTGGAGCCGCCGGAAAAGGCGTTGAAATTTCGAGGGGGCGAGAGAG
AAGCCCTTGCCAGGCTCGAACGCGTCATGGCAAGGGAGGACTGGATATCA
AAGTTCGAGAAGCCCAAAACCTCTCCGAACTCGATCGAGCCCAGCACAAC
CGTCCTCAGCATGTACATTTCTCATGGATGCTTGAGCACGCGGAGGTTTT
GGCACGCTCTCTGCAAGGTTTATACCAAAAAGGGTGGCTCCAAGCCTCCG
GTTTCGCTCAAGGGCCAACTACTGTGGAAAGAGTTTAACTATTTCAGTGG
GTACTCAATCCCTAACTTCGACAAGATGGTCGGCAATCCCGTCGCCAGGC
AGATACCGTGGGACAAGGACGAGGAGAAGCTGATGGCGTGGAAAGAGGCC
AGAACCGGATTCCCTTGGATCGACGCCGCTATGACGCAGCTCAAAGAAGA
AGGGTGGATTCACCACCTTGCTCGCCACGCTGTGGCTTGCTTCCTGACGC
GGGGTGACCTGTGGCAGAGCTGGGAGGACGGAGCTGCCGTTTTCGACGAG
CTCTTACTCGACGCGGATTGGAGCATCAACAACTTCAACTGGCAGTGGTT
GAGCTGTTCGGCCTTTTTCTACCAGGCAAGCCTCTTTGCGCTTTTCATGC
CGATCACTTGTACCCTAGCGTGCTTCGATGGCGGTTACTTCAGGTGCTAT
AGTCCAATTGCCTTTGGAAAGAAGACAGACAAAAATGGGGACTACATCAA
GAAGTACTTGCCAGTCCTCCGAAAGTTTCCGTCGAAGTACATCTACGAGC
CATGGACGGCACCGTTACAGGTGCAACGAGGTTGCGGATGCATCATCGGC
AAGGACTACCCGAAGCCCATCGTCGACCACACCGACACCTCCAAGGCCAA
CATGGCCAAGATGCACGACGCTTACGATGCCCACCAGGAGGCGCAGGCTG
CAGAATCCCACGATGACGCAGGCAGTGGCAGTGGCGGTGGTGGTAGTGGT
GGCGGAGCAAGGTCGAATGCTCGAGGATCAGCGCCGGCGTCACGCAAGAG
AGTCAAGCGTTGA
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