mRNA_Ecto-sp13_S_contig11747.1503.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11747.1503.1 vs. uniprot
Match: D8LQF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQF1_ECTSI) HSP 1 Score: 165 bits (418), Expect = 1.920e-47 Identity = 82/87 (94.25%), Postives = 86/87 (98.85%), Query Frame = 1
Query: 10 QLVCTVPELNPAMDTFRVGTVLELVRELAYSMADVGLNTRILIQPSMGKGVFKSLPLALSGVMSIMQGMDWEDGLVGSHVNFGQVNS 270
+LVCTVPELNPAMDT+RVGTVLELVRELAYSMADVGLNTRILIQPSMGKGVFKSLPLALSGVMSIMQGMDWEDGLVGSHVNFGQ+ +
Sbjct: 212 KLVCTVPELNPAMDTYRVGTVLELVRELAYSMADVGLNTRILIQPSMGKGVFKSLPLALSGVMSIMQGMDWEDGLVGSHVNFGQLGN 298
BLAST of mRNA_Ecto-sp13_S_contig11747.1503.1 vs. uniprot
Match: A0A6H5J8I4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8I4_9PHAE) HSP 1 Score: 164 bits (414), Expect = 9.420e-47 Identity = 81/87 (93.10%), Postives = 86/87 (98.85%), Query Frame = 1
Query: 10 QLVCTVPELNPAMDTFRVGTVLELVRELAYSMADVGLNTRILIQPSMGKGVFKSLPLALSGVMSIMQGMDWEDGLVGSHVNFGQVNS 270
+LVCTVPELNPAMDT+RVGTVLELVRELAYSMADVGLNTRILIQPSMG+GVFKSLPLALSGVMSIMQGMDWEDGLVGSHVNFGQ+ +
Sbjct: 265 KLVCTVPELNPAMDTYRVGTVLELVRELAYSMADVGLNTRILIQPSMGEGVFKSLPLALSGVMSIMQGMDWEDGLVGSHVNFGQLGN 351
BLAST of mRNA_Ecto-sp13_S_contig11747.1503.1 vs. uniprot
Match: A0A5J4Y9U0_9CHLO (Adenylate kinase family isoform 1 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y9U0_9CHLO) HSP 1 Score: 100 bits (249), Expect = 2.550e-23 Identity = 47/87 (54.02%), Postives = 65/87 (74.71%), Query Frame = 1
Query: 19 CTVPELNPAMDTFRVGTVLELVRELAYSMADVGLNTRILIQPSMGKGVFKSLPLALSGVMSIMQGMDWEDGLVGSHVNFGQVNSHAI 279
CT+PELNP MD +R+GT+LE+VRE+AY++A+ G ++ +Q SMG+GVF+ LPL+LSGV IM MDW D +G V+FG+V I
Sbjct: 118 CTIPELNPEMDVYRIGTLLEMVREMAYALAEDGKLVKVCVQQSMGQGVFQGLPLSLSGVRKIMNMMDWGD--IGEFVSFGEVGRDQI 202
BLAST of mRNA_Ecto-sp13_S_contig11747.1503.1 vs. uniprot
Match: W7TPW6_9STRA (DUF1995 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPW6_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 2.330e-20 Identity = 40/91 (43.96%), Postives = 62/91 (68.13%), Query Frame = 1
Query: 28 PELNPAMDTFRVGTVLELVRELAYSMADVGLNTRILIQPSMGKGVFKSLPLALSGVMSIMQGMDWE-------DGLVGSHVNFGQVNSHAI 279
PE NPA DT+R+GT+LELVRELA+ G ++ +Q MG+G+FK LP++L+G I++ MDW+ +G+VG+ ++FG+V H +
Sbjct: 255 PESNPAFDTYRIGTILELVRELAFHQVSCGKRVKLCVQQKMGEGIFKGLPISLNGCRFILENMDWQSKEGEEKEGVVGTQIHFGEVGEHVV 345
BLAST of mRNA_Ecto-sp13_S_contig11747.1503.1 vs. uniprot
Match: A0A7S2JTX6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JTX6_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 4.210e-20 Identity = 44/97 (45.36%), Postives = 65/97 (67.01%), Query Frame = 1
Query: 10 QLVCTVPELNPAMDTFRVGTVLELVRELAYSMADVGLNTRILIQPSMGKGVFKSLPLALSGVMSIMQGMDWE-------DGLVGSHVNFGQVNSHAI 279
Q+ C PELN AMD +RVGT+LE+ R LA ++A+ L R+ +Q SMG G+F ++P LSGV +++Q MDW+ +G+VG++VNFG V +
Sbjct: 280 QITCLFPELNTAMDAYRVGTLLEMARALAITLAEQNLRVRVCVQGSMGVGIFTAIPKQLSGVATLLQRMDWQSGEGEENEGMVGTYVNFGGVGKEHV 376
BLAST of mRNA_Ecto-sp13_S_contig11747.1503.1 vs. uniprot
Match: A0A7S1BB49_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BB49_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 6.410e-20 Identity = 44/97 (45.36%), Postives = 63/97 (64.95%), Query Frame = 1
Query: 10 QLVCTVPELNPAMDTFRVGTVLELVRELAYSMADVGLNTRILIQPSMGKGVFKSLPLALSGVMSIMQGMDWED-------GLVGSHVNFGQVNSHAI 279
QL C PE+NP MD++R+GT+LELVR +A +A+ L R+ +Q SMG G+F P +LSGV +++ MDW+ G+VG +VNFG V S +
Sbjct: 249 QLTCLFPEMNPEMDSYRIGTLLELVRNIATVIAEQNLRVRVCVQGSMGVGIFTGTPKSLSGVSTLLNRMDWQSEEGERNAGMVGDYVNFGNVGSEHV 345
BLAST of mRNA_Ecto-sp13_S_contig11747.1503.1 vs. uniprot
Match: A0A835YYF4_9STRA (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYF4_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 2.680e-19 Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 1
Query: 43 AMDTFRVGTVLELVRELAYSMADVGLNTRILIQPSMGKGVFKSLPLALSGVMSIMQGMDWEDGLVGSHVNFGQVNSHAI 279
A DT+RVGT+LELVRELA +AD G ++ +Q SMG G+F LPL+LSG +IM+ MDW +G VG+ VNFG+V + +
Sbjct: 1998 APDTYRVGTMLELVRELATGLADEGKRVKVCVQGSMGVGIFTGLPLSLSGTRAIMERMDWGEGYVGASVNFGKVGAEFV 2076
BLAST of mRNA_Ecto-sp13_S_contig11747.1503.1 vs. uniprot
Match: B8BXQ4_THAPS (Adenylate-kinase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXQ4_THAPS) HSP 1 Score: 87.4 bits (215), Expect = 3.580e-19 Identity = 40/86 (46.51%), Postives = 60/86 (69.77%), Query Frame = 1
Query: 28 PELNPAMDTFRVGTVLELVRELAYSMADVGLNTRILIQPSMGKGVFKSLPLALSGVMSIMQGMDWE-------DGLVGSHVNFGQV 264
PE+NP+MD++R+GT+LEL R +A +A+ L R+ +Q SMG G+F +P L+GV +++Q MDWE +G+VG +VNFG V
Sbjct: 45 PEMNPSMDSYRIGTLLELARSIAIKLAEQNLRVRVCVQGSMGVGIFTGIPKQLNGVSTLLQRMDWESEVGEENEGMVGDYVNFGFV 130
BLAST of mRNA_Ecto-sp13_S_contig11747.1503.1 vs. uniprot
Match: A0A0E0LTC0_ORYPU (Adenylate kinase n=4 Tax=Oryza punctata TaxID=4537 RepID=A0A0E0LTC0_ORYPU) HSP 1 Score: 90.1 bits (222), Expect = 4.770e-19 Identity = 42/91 (46.15%), Postives = 62/91 (68.13%), Query Frame = 1
Query: 10 QLVCTVPELNPAMDTFRVGTVLELVRELAYSMADVGLNTRILIQPSMGKGVFKSLPLALSGVMSIMQGMDWED-GLVGSHVNFGQVNSHAI 279
Q+ +PELNP MD +R+GT++ELVREL+ S AD G ++ +Q SMG+G F +PL L+G I++ MDW D G G+ +NFG V ++ +
Sbjct: 359 QIDINIPELNPEMDVYRIGTLMELVRELSLSFADDGKRVKVCVQGSMGQGAFAGIPLQLAGTRKILEIMDWGDYGAKGTFINFGAVGANEV 449
BLAST of mRNA_Ecto-sp13_S_contig11747.1503.1 vs. uniprot
Match: A0A7S1ZVD1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZVD1_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 5.600e-19 Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = 1
Query: 13 LVCTVPELNPAMDTFRVGTVLELVRELAYSMADVGLNTRILIQPSMGKGVFKSLPLALSGVMSIMQGMDWE-------DGLVGSHVNFGQVNSHAI 279
+ C PE+NP+MD++R+GT+LEL R +A +A+ L R+ +Q SMG G+F P L+GV +++Q MDW+ +G+VG +VNFG + +
Sbjct: 55 MTCMFPEMNPSMDSYRIGTLLELARSVAIKLAEQNLRVRVCVQGSMGVGIFTGTPKQLNGVSTLLQRMDWQSNAGEENEGMVGDYVNFGAIGKDHV 150 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11747.1503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11747.1503.1 >prot_Ecto-sp13_S_contig11747.1503.1 ID=prot_Ecto-sp13_S_contig11747.1503.1|Name=mRNA_Ecto-sp13_S_contig11747.1503.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=93bp VYVQLVCTVPELNPAMDTFRVGTVLELVRELAYSMADVGLNTRILIQPSMback to top mRNA from alignment at Ecto-sp13_S_contig11747:26..304+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11747.1503.1 ID=mRNA_Ecto-sp13_S_contig11747.1503.1|Name=mRNA_Ecto-sp13_S_contig11747.1503.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11747:26..304+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11747:26..304+ >mRNA_Ecto-sp13_S_contig11747.1503.1 ID=mRNA_Ecto-sp13_S_contig11747.1503.1|Name=mRNA_Ecto-sp13_S_contig11747.1503.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11747:26..304+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |