mRNA_Ecto-sp13_S_contig11740.1499.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11740.1499.1
Unique NamemRNA_Ecto-sp13_S_contig11740.1499.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11740.1499.1 vs. uniprot
Match: D8LFV5_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFV5_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.680e-33
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:  487 AGYFAGLLSSSFMVGRVISAYFWGIVADRCGRRPVVLLSLASTGGLAVAFGFSTTFLWALACR 675
            +GYFAGLLSSSFM GRVISAYFWGIVADRCGRRPVVLLSLASTGGLAVAFGFSTTFLWALACR
Sbjct:    3 SGYFAGLLSSSFMFGRVISAYFWGIVADRCGRRPVVLLSLASTGGLAVAFGFSTTFLWALACR 65
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BLAST of mRNA_Ecto-sp13_S_contig11740.1499.1 vs. uniprot
Match: A0A6H5JZQ3_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ3_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 9.220e-31
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:  487 AGYFAGLLSSSFMVGRVISAYFWGIVADRCGRRPVVLLSLASTGGLAVAFGFSTTFLWALACR 675
            +GYFAGLLSSSFMVGRVISAYFWGI+ADRCGRRPVVLLSLASTGGLAVAFGFSTTFLWALACR
Sbjct:    3 SGYFAGLLSSSFMVGRVISAYFWGIIADRCGRRPVVLLSLASTGGLAVAFGFSTTFLWALACR 65
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BLAST of mRNA_Ecto-sp13_S_contig11740.1499.1 vs. uniprot
Match: D8LRH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH9_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 3.280e-29
Identity = 57/105 (54.29%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:  361 FPFMPMAVLTVGLLSAWIVQLGVIAYAGYMVRHLGIVEDKDQAGYFAGLLSSSFMVGRVISAYFWGIVADRCGRRPVVLLSLASTGGLAVAFGFSTTFLWALACR 675
            FP++PM  + +GL+S       +  Y GYMV+HLG+ +DKD+AGY+AG +SS+FMVGRV S+YFWG  AD  GR PV+   L S   L++AFG ST+FLWAL CR
Sbjct:   26 FPWLPMLAIAIGLVSHSYALTSLFPYVGYMVQHLGVTDDKDEAGYYAGYVSSAFMVGRVGSSYFWGRFADSHGRLPVIYAGLTSMVVLSIAFGLSTSFLWALGCR 130
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BLAST of mRNA_Ecto-sp13_S_contig11740.1499.1 vs. uniprot
Match: A0A6H5L4Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q8_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.590e-25
Identity = 55/110 (50.00%), Postives = 71/110 (64.55%), Query Frame = 1 
Query:  346 DRMASFPFMPMAVLTVGLLSAWIVQLGVIAYAGYMVRHLGIVEDKDQAGYFAGLLSSSFMVGRVISAYFWGIVADRCGRRPVVLLSLASTGGLAVAFGFSTTFLWALACR 675
            D    FP++PM  L +GL+S       +  Y GYMV+HLG+ +DKD+AGY+AG L+S+FMVGR          ADR GR PVV + L+S G L++AFG ST F WAL CR
Sbjct:   32 DMGTPFPWLPMLALAIGLVSHSYSLSSLFPYVGYMVQHLGVTDDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCR 141
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BLAST of mRNA_Ecto-sp13_S_contig11740.1499.1 vs. uniprot
Match: A0A6H5KX19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX19_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 3.710e-25
Identity = 53/105 (50.48%), Postives = 72/105 (68.57%), Query Frame = 1 
Query:  361 FPFMPMAVLTVGLLSAWIVQLGVIAYAGYMVRHLGIVEDKDQAGYFAGLLSSSFMVGRVISAYFWGIVADRCGRRPVVLLSLASTGGLAVAFGFSTTFLWALACR 675
            FP++PM  L +GL+S       +  Y GYMV+HLG+ +D+D+AGY+AG L+S+FMVGR  ++      ADR GR PVV + L+S G L++AFG ST F WAL CR
Sbjct:   73 FPWLPMLALAIGLVSHSYSFSSLFPYVGYMVQHLGVTDDRDEAGYYAGCLASAFMVGRFATSXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCR 177
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BLAST of mRNA_Ecto-sp13_S_contig11740.1499.1 vs. uniprot
Match: D8LRH7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH7_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 3.720e-25
Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:  361 FPFMPMAVLTVGLLSAWIVQLGVIAYAGYMVRHLGIVEDKDQAGYFAGLLSSSFMVGRVISAYFWGIVADRCGRRPVVLLSLASTGGLAVAFGFSTTFLWALACR 675
            FP++PM  L +GL+S       +  Y GYMV+HLG+ +DKD+AGY+AG L+S+FMVGR          ADR GR PVV + L+S G L++AFG ST F WAL CR
Sbjct:    5 FPWLPMLALAIGLVSHSYSLSSLFPYVGYMVQHLGVADDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCR 109
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BLAST of mRNA_Ecto-sp13_S_contig11740.1499.1 vs. uniprot
Match: A0A6H5KBD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD6_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 3.640e-23
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:  352 MASFPFMPMAVLTVGLLSAWIVQLGVIAYAGYMVRHLGIVEDKDQAGYF 498
            MASFPFMPMAVLTVGLLSAWIVQLGVIAYAGYMVRHLGIVEDKDQAG F
Sbjct:    1 MASFPFMPMAVLTVGLLSAWIVQLGVIAYAGYMVRHLGIVEDKDQAGEF 49
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BLAST of mRNA_Ecto-sp13_S_contig11740.1499.1 vs. uniprot
Match: A0A7R9UB92_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UB92_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.290e-20
Identity = 46/105 (43.81%), Postives = 65/105 (61.90%), Query Frame = 1 
Query:  361 FPFMPMAVLTVGLLSAWIVQLGVIAYAGYMVRHLGIVEDKDQAGYFAGLLSSSFMVGRVISAYFWGIVADRCGRRPVVLLSLASTGGLAVAFGFSTTFLWALACR 675
            +P   + V  V + +       +  Y GYMV  +G  +D D+AGY+AG + ++FM GR +S++FWGI ADR GR+PV+L+  AS   L+V FG STTF  AL  R
Sbjct:   26 YPLRQLLVAAVAMFAHAFSLTSLFPYVGYMVVDIGATDDVDKAGYYAGFVGAAFMAGRTVSSFFWGIYADRYGRKPVILIGCASIAVLSVLFGVSTTFSMALVTR 130
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BLAST of mRNA_Ecto-sp13_S_contig11740.1499.1 vs. uniprot
Match: A0A6H5K4Y5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Y5_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 3.630e-20
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:  352 MASFPFMPMAVLTVGLLSAWIVQLGVIAYAGYMVRHLGIVEDKDQA 489
            MASFPFMPMAVLTVGLLSAWIVQLGVIAYAGYMVRHLGIVEDKDQA
Sbjct:    1 MASFPFMPMAVLTVGLLSAWIVQLGVIAYAGYMVRHLGIVEDKDQA 46
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BLAST of mRNA_Ecto-sp13_S_contig11740.1499.1 vs. uniprot
Match: G2XLD2_ORYGL (Hypothetical_protein n=1 Tax=Oryza glaberrima TaxID=4538 RepID=G2XLD2_ORYGL)

HSP 1 Score: 85.5 bits (210), Expect = 1.080e-15
Identity = 43/117 (36.75%), Postives = 66/117 (56.41%), Query Frame = 1 
Query:  325 VSERGNADRMASFPFMPMAVLTVGLLSAWIVQLGVIAYAGYMVRHLGIVEDKDQAGYFAGLLSSSFMVGRVISAYFWGIVADRCGRRPVVLLSLASTGGLAVAFGFSTTFLWALACR 675
            V ER  A R    P+  +  + V  L++ +    +  +  +MVR L + + ++  GY+AG L +S+MVGR  +A FWG+VADR GR+PV++ S+ S       FG ST +  AL  R
Sbjct:   30 VQERRKASRGGRIPYTELFFVAVTTLASSLPITCLFPFLYFMVRDLQVAQTEEDIGYYAGFLGASYMVGRSFAAIFWGVVADRIGRKPVIVFSILSVVIFNTLFGLSTKYWMALTTR 146
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11740.1499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFV5_ECTSI1.680e-3396.83MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JZQ3_9PHAE9.220e-3196.83MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LRH9_ECTSI3.280e-2954.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4Q8_9PHAE1.590e-2550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX19_9PHAE3.710e-2550.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRH7_ECTSI3.720e-2551.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBD6_9PHAE3.640e-2397.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9UB92_9STRA1.290e-2043.81Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A6H5K4Y5_9PHAE3.630e-20100.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
G2XLD2_ORYGL1.080e-1536.75Hypothetical_protein n=1 Tax=Oryza glaberrima TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11740contigEcto-sp13_S_contig11740:2023..4091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score127.1
Seed ortholog evalue5e-27
Seed eggNOG ortholog2880.D8LFV5
Model size678
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.major facilitator superfamily
EggNOG OGsKOG2615@1,KOG2615@2759
Cds size327
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462618.373985-CDS-Ecto-sp13_S_contig11740:2022..22101681462618.373985-CDS-Ecto-sp13_S_contig11740:2022..2210Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11740 2023..2210 -
1681462618.3832757-CDS-Ecto-sp13_S_contig11740:3601..37401681462618.3832757-CDS-Ecto-sp13_S_contig11740:3601..3740Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11740 3602..3740 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462618.3942888-UTR-Ecto-sp13_S_contig11740:3740..40911681462618.3942888-UTR-Ecto-sp13_S_contig11740:3740..4091Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11740 3741..4091 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11740.1499.1prot_Ecto-sp13_S_contig11740.1499.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11740 2023..3740 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11740.1499.1

>prot_Ecto-sp13_S_contig11740.1499.1 ID=prot_Ecto-sp13_S_contig11740.1499.1|Name=mRNA_Ecto-sp13_S_contig11740.1499.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
MASFPFMPMAVLTVGLLSAWIVQLGVIAYAGYMVRHLGIVEDKDQAGYFA
GLLSSSFMVGRVISAYFWGIVADRCGRRPVVLLSLASTGGLAVAFGFSTT
FLWALACR*
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mRNA from alignment at Ecto-sp13_S_contig11740:2023..4091-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11740.1499.1 ID=mRNA_Ecto-sp13_S_contig11740.1499.1|Name=mRNA_Ecto-sp13_S_contig11740.1499.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2069bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11740:2023..4091- (Ectocarpus species13 EcNAP12_S_4_19m)
ATTGTACAGGTAGGTGAATGTGTAGGGTGCTCGCTGCGGCCCACCTCGCT
TAGCCGCGGCCCACGCCCAGCAGATAGCTGCCGCTCACCAGCCGCCCGCG
GATAGAAGTCTTTGGAGTAGAAAATTACCTGCCGTTCAATTTGTGCGGCT
CGTTGTGTGTTCGTGCCCCCCCTTCCCGAGAGAGTAACCCTGGTGGTCTG
CGAGCCGGACGGCTAGGCAACTATCATCGAAAAAAAGTCGCGTCGCATCC
GCAACATCTGTGCGGCAACAACCTGGAGGATACCCACCCCAGTTCTCTGG
ACTGATAAGAAGTACTGAGAGGGGGTGAGTGAGAGAGGCAACGCGGATAG
AATGGCATCCTTTCCGTTCATGCCCATGGCAGTGCTCACGGTCGGTTTGC
TCAGCGCTTGGATCGTCCAGCTAGGCGTGATCGCTTACGCGGGGTACATG
GTGCGCCACTTGGGTATCGTCGAGGACAAGGATCAAGCCGGTGAGTTTTT
GGTCGTTGTAATCAACCGCGAAGAATCCACCCGCCCTTTTCCAGTGTATA
CACCCATCGCATTGTCCCTTGAATAAAATAACACCGCACCGCATGCGATG
CACCCCACGATCTTGCGATGTCCCTTGAATAAAATCGCACCGCATGGGAT
GCACCGCACGATCTTGCTATACTCCTGCCTGTACGGCACGTAGCGTTCTT
GTCGGAGATAGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCCCACGTTTCGGTAACACGTTACTTCGGGTGCACCACC
AACATTTTACCGATCAACCACAAGGCAGGTGTCCCACGGGTTTCGAATGT
TCTCACTTTCGCCACACTGTGATGCTTGCAAATCATGGCTTGCTGTCTCC
AAACCCAGTACAGTCGGGTGCCTTCTATATGGGATGTACAGTGCGGGTGC
CCGGTATGGTGCGGGCGGAATTGACTGGTACAAACAGATGGAATGATCAA
GATGGGCAAAACATTGATTGGTATGGGTGCCTGCTCTACCATAGTGCGAG
TGAAAGCGCTTGACACATACCCGCACTACTGTAGAGGGCACTCGACTCTA
TCCTTTAATCCTCGCACAAAAAAAATACTACTTTAATATCCATTCTTTGC
AAGCAAATGAATGAGGAGCATCGCGCAAAACAAGATTTCTTCTCGTCAAC
ACTGGTTCATTCTGTCTTCCACGAGCTTCCTCTGCGTCTCCAATATACAA
TCACAGCATTATCACGGCCGGAAGATCTCATGGGGTCCCGACCTAATTAT
TTGGCTTGTGTCGACGTCGAAATGTCCTCAGGGTACTTCGCTGGTCTGCT
TTCTTCCAGCTTCATGGTTGGTCGTGTGATCTCGGCATACTTCTGGGGGA
TCGTTGCCGATCGGTGCGGCCGTCGCCCAGTCGTCTTGCTCTCGCTGGCA
TCTACGGGAGGGCTCGCCGTGGCCTTCGGGTTTTCAACAACGTTCTTGTG
GGCCCTTGCGTGCAGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11740:2023..4091-

>mRNA_Ecto-sp13_S_contig11740.1499.1 ID=mRNA_Ecto-sp13_S_contig11740.1499.1|Name=mRNA_Ecto-sp13_S_contig11740.1499.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11740:2023..4091- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCATCCTTTCCGTTCATGCCCATGGCAGTGCTCACGGTCGGTTTGCT
CAGCGCTTGGATCGTCCAGCTAGGCGTGATCGCTTACGCGGGGTACATGG
TGCGCCACTTGGGTATCGTCGAGGACAAGGATCAAGCCGGGTACTTCGCT
GGTCTGCTTTCTTCCAGCTTCATGGTTGGTCGTGTGATCTCGGCATACTT
CTGGGGGATCGTTGCCGATCGGTGCGGCCGTCGCCCAGTCGTCTTGCTCT
CGCTGGCATCTACGGGAGGGCTCGCCGTGGCCTTCGGGTTTTCAACAACG
TTCTTGTGGGCCCTTGCGTGCAGGTAG
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