mRNA_Ecto-sp13_S_contig11735.1495.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11735.1495.1
Unique NamemRNA_Ecto-sp13_S_contig11735.1495.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11735.1495.1 vs. uniprot
Match: A0A6H5KFC9_9PHAE (WW domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFC9_9PHAE)

HSP 1 Score: 742 bits (1916), Expect = 3.730e-262
Identity = 423/465 (90.97%), Postives = 429/465 (92.26%), Query Frame = 1 
Query:  298 QNKDGGDSNDRDVQDFMQVIKHPGAPESAIQIQKKYDQDKNSDRYHRQIRQFLQEHRKRQRANVAQQQH--PQQLAAGNNDGMESGGALGQPGGGLFMPSGSDVLNGEGPTMAPWAGGGARDDIRDSVVGAGGLAGGAGDIEPPLDQAGRWCDVDGIVNSPVPTVAGALGVPPLGVDMGGTSSSLQSGLGGLTLDGGGAGQPSLSKYQQQHLDSQQFHMAQQQQQ--RFNPQPAGFMFQQPQQHPFGDLGNTGGGGPLSEVGSIGMNNNSSRGNNSNSIPLRPDAQQPSMVMTAGGVTVGDQVPPGDGGGGSGRLGGVYGSDGGSMPFSPSSTSNPPGSADVGPLSGMPGGGGRXXXXXXXXXXXXXXXXXX--YPVGPGPDSGRLFGEGDAAADGRGVQDMNAAAAAASTMKAVSGEGGVVGGGVSRSPVQTVVVPSEQGEWVMYTSKENGNRAYWHNAKLNKT 1674
            QNKDGGDSNDRDVQ+FMQVI HPGAPESAIQIQKKYDQDKNSDRY RQIRQFLQEH KRQR N AQQQ   PQQLA GNNDGM S GALGQP GGLFMPSGSDVLNGEGPTMAPWAGGG  DDI DSVVGAGGLAGGAGDIEPPLDQ GRWCDVDGIVNSPVPTVAGALGVPP GVDM GTSSSLQSGLGGLTLDGGG GQPSLS YQQQHLDSQQFHMAQQQQQ  RFNPQP GFMFQQPQQHPFGDLGN GGGGP SEVG IGMNNNSS GNNS+SIPLRPDAQQPSMVM AGGVTVGDQVPPGDGGGGSGRL GVYGSDGGSM FSPSSTSNPPGS++VGPLSG+PGGGGRXXXXXXXXXXXXXXXXXX  YPVGPGPDSGRLFGEGDAAADGRGVQDMNAAAAAASTMKA+SGE GVVGGGVSRSP QTVV PSEQGEWVMYTSKEN NRAYWHNAKLNKT
Sbjct:   81 QNKDGGDSNDRDVQEFMQVINHPGAPESAIQIQKKYDQDKNSDRYRRQIRQFLQEHWKRQRVNFAQQQQQQPQQLARGNNDGMASEGALGQPAGGLFMPSGSDVLNGEGPTMAPWAGGGTGDDINDSVVGAGGLAGGAGDIEPPLDQTGRWCDVDGIVNSPVPTVAGALGVPPPGVDMVGTSSSLQSGLGGLTLDGGGVGQPSLSNYQQQHLDSQQFHMAQQQQQQQRFNPQPGGFMFQQPQQHPFGDLGNPGGGGPHSEVGLIGMNNNSSSGNNSDSIPLRPDAQQPSMVMPAGGVTVGDQVPPGDGGGGSGRLRGVYGSDGGSMRFSPSSTSNPPGSSNVGPLSGIPGGGGRXXXXXXXXXXXXXXXXXXXXYPVGPGPDSGRLFGEGDAAADGRGVQDMNAAAAAASTMKAMSGERGVVGGGVSRSPGQTVVAPSEQGEWVMYTSKENDNRAYWHNAKLNKT 545
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BLAST of mRNA_Ecto-sp13_S_contig11735.1495.1 vs. uniprot
Match: D7G6L8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L8_ECTSI)

HSP 1 Score: 640 bits (1651), Expect = 1.080e-225
Identity = 356/384 (92.71%), Postives = 361/384 (94.01%), Query Frame = 1 
Query:  346 MQVIKHPGAPESAIQIQKKYDQDKNSDRYHRQIRQFLQEHRKRQRANVAQQQHPQQLAAGNNDGMESGGALGQPGGGLFMPSGSDVLNGEGPTMAPWAGGGARDDIRDSVVGAGGLAGGAGDIEPPLDQAGRWCDVDGIVNSPVPTVAGALGVPPLGVDMGGTSSSLQSGLGGLTLDGGGAGQPSLSKYQQQHLDSQQFHMAQQQQQRFNPQPAGFMFQQPQQHPFGDLGNTGGGGPLSEVGSIGMNNNSSRGNNSNSIPLRPDAQQPSMVMTAGGVTVGDQVPPGDGGGGSGRLGGVYGSDGGSMPFSPSSTSNPPGSADVGPLSGMPGGGGRXXXXXXXXXXXXXXXXXX--YPVGPGPDSGRLFGEGDAAADGRGVQDMNA 1491
            MQV+ HPGAPESAIQIQKKYDQDKN DRYHRQIR FLQEHRK+QRAN AQQQ PQQLAAGNNDGMESGGALGQP GGLFMPSGSD+LNGEGPTMAPWAGGGARDDI DSVVGAGGLAGGAGDIEPPLDQAGRWCDVDGIVNSP+PTVAGALGVPP GVDMGGTSSSLQSGLGGLTLDGGG GQPSLS YQQQHLDSQQFHMAQ QQQRFNPQP GFMFQQPQQHPFGDLGN GGGGPLSEVG IGMNNNSS GNNSNSIPLRPDAQQPSM M AGGVTVGDQVPPGDGGGGSGRLGGVYGSDGGSMPFSPSSTSNPPGSA+VGPLSGMPGGGGR  XXXXXXXXXXXXXXXX  YPVGPGPDSGRLFGEG A ADGRGVQDMNA
Sbjct:    1 MQVMNHPGAPESAIQIQKKYDQDKNGDRYHRQIRHFLQEHRKKQRANFAQQQQPQQLAAGNNDGMESGGALGQPAGGLFMPSGSDMLNGEGPTMAPWAGGGARDDIGDSVVGAGGLAGGAGDIEPPLDQAGRWCDVDGIVNSPIPTVAGALGVPPPGVDMGGTSSSLQSGLGGLTLDGGGVGQPSLSNYQQQHLDSQQFHMAQPQQQRFNPQPGGFMFQQPQQHPFGDLGNPGGGGPLSEVGLIGMNNNSSSGNNSNSIPLRPDAQQPSMTMPAGGVTVGDQVPPGDGGGGSGRLGGVYGSDGGSMPFSPSSTSNPPGSANVGPLSGMPGGGGRAQXXXXXXXXXXXXXXXXXXYPVGPGPDSGRLFGEGGATADGRGVQDMNA 384
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11735.1495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KFC9_9PHAE3.730e-26290.97WW domain-containing protein (Fragment) n=1 Tax=Ec... [more]
D7G6L8_ECTSI1.080e-22592.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11735contigEcto-sp13_S_contig11735:2406..4981 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1674
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_009920.1
Cds size1674
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462618.0277114-CDS-Ecto-sp13_S_contig11735:2405..31401681462618.0277114-CDS-Ecto-sp13_S_contig11735:2405..3140Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11735 2406..3140 -
1681462618.0369449-CDS-Ecto-sp13_S_contig11735:3598..38051681462618.0369449-CDS-Ecto-sp13_S_contig11735:3598..3805Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11735 3599..3805 -
1681462618.0457304-CDS-Ecto-sp13_S_contig11735:4249..49811681462618.0457304-CDS-Ecto-sp13_S_contig11735:4249..4981Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11735 4250..4981 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11735.1495.1prot_Ecto-sp13_S_contig11735.1495.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11735 2406..4981 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11735.1495.1

>prot_Ecto-sp13_S_contig11735.1495.1 ID=prot_Ecto-sp13_S_contig11735.1495.1|Name=mRNA_Ecto-sp13_S_contig11735.1495.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=558bp
MLLIDNPFPSFSPRGSPQQHHGGQQQQHDASGHVGGGGGRVERNSGNGGG
GGGSGGGGGGGGGGGGGGGGGGGGGRRKGNRHRRGNGGGGGGGPGDGGRQ
NKDGGDSNDRDVQDFMQVIKHPGAPESAIQIQKKYDQDKNSDRYHRQIRQ
FLQEHRKRQRANVAQQQHPQQLAAGNNDGMESGGALGQPGGGLFMPSGSD
VLNGEGPTMAPWAGGGARDDIRDSVVGAGGLAGGAGDIEPPLDQAGRWCD
VDGIVNSPVPTVAGALGVPPLGVDMGGTSSSLQSGLGGLTLDGGGAGQPS
LSKYQQQHLDSQQFHMAQQQQQRFNPQPAGFMFQQPQQHPFGDLGNTGGG
GPLSEVGSIGMNNNSSRGNNSNSIPLRPDAQQPSMVMTAGGVTVGDQVPP
GDGGGGSGRLGGVYGSDGGSMPFSPSSTSNPPGSADVGPLSGMPGGGGRA
QPEPEFSLGGGGGGGSGYPVGPGPDSGRLFGEGDAAADGRGVQDMNAAAA
AASTMKAVSGEGGVVGGGVSRSPVQTVVVPSEQGEWVMYTSKENGNRAYW
HNAKLNKT
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mRNA from alignment at Ecto-sp13_S_contig11735:2406..4981-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11735.1495.1 ID=mRNA_Ecto-sp13_S_contig11735.1495.1|Name=mRNA_Ecto-sp13_S_contig11735.1495.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2576bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11735:2406..4981- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGTTGATCGACAACCCGTTTCCCTCGTTCTCGCCACGCGGCTCGCC
GCAGCAGCACCATGGGGGGCAGCAACAACAGCATGATGCCTCCGGGCACG
TGGGAGGTGGAGGTGGCCGAGTAGAAAGAAACTCTGGCAATGGTGGCGGC
GGCGGTGGTAGTGGTGGTGGCGGCGGCGGCGGCGGTGGCGGCGGTGGCGG
CGGTGGCGGTGGTGGTGGTGGTGGTCGTCGAAAAGGCAACAGGCACCGCC
GTGGTAATGGTGGTGGCGGAGGCGGCGGCCCTGGTGACGGGGGCAGGCAA
AACAAGGACGGCGGCGATTCCAACGACCGAGACGTGCAGGACTTCATGCA
GGTGATCAAGCACCCGGGCGCTCCCGAGTCCGCGATCCAAATCCAGAAGA
AGTACGACCAGGACAAGAACAGCGACCGGTACCACCGCCAGATCCGCCAA
TTTCTGCAAGAGCACCGCAAGAGGCAACGGGCCAACGTCGCGCAGCAGCA
GCACCCGCAGCAGCTGGCTGCAGGCAACAACGACGGCATGGAATCCGGAG
GCGCCCTTGGGCAGCCAGGGGGAGGCCTCTTCATGCCCTCCGGCAGCGAC
GTGCTGAACGGAGAGGGTCCGACCATGGCCCCGTGGGCTGGTGGAGGAGC
AAGGGATGACATCCGCGACTCGGTAGTAGGAGCGGGTGGGCTTGCCGGTG
GAGCCGGCGACATCGAGCCTCCCCTTGATCAGGTGCGTGTTGGACGATCG
TTCCGTCGCTGGCCCGGGGATGGCGGAGCAACTGTGGTCCCGCGGCGTCT
TAGGTCGATATCTTATGTTGTCGCAACCACAGTGGCATGTCTAGCGGTAG
TATGCGACGATGGATTTGGACTACAAAGTTGAAGGTTGTCACGGCCATGG
CAGATACATAAAGAGTACATCACAAGAGCACAGCTTCAAAGTCAGGTTTA
TGATGAGAAAGCCGGATTTGAGAGAGTATCCGCTACCTGCTGCTGTGATT
TGTTGATTGTTTTTCCCCTCGCGATTTGACCAAGAATCTCGTGTGTCCAG
CCCGTGCCCCGCGTTCTCGGAGGGCGGAAAGACATGAAGTATGCATCTCG
CACCGATGGATTGCTAAACTAGAGCATCCGCGCACGGCGGTCCCGCCGCC
TTTTTCGCCTTTTCCCGCGTACGTAGGCTGGCAGGTGGTGTGACGTTGAC
GGCATTGTCAACAGCCCCGTTCCTACTGTGGCCGGAGCGCTGGGCGTGCC
CCCTCTCGGCGTAGACATGGGAGGCACTTCATCGTCCCTGCAGTCCGGGC
TTGGAGGGCTCACGCTTGACGGCGGAGGTGCCGGCCAGCCGTCGTTGTCG
AAGTATCAGCAGCAGCACCTCGATAGCCAGCAGGTATACATGCTTGGGGA
CCGGCAAGTTGCCGATGGTCGATTTCAATATAGAGCCATGCCCGACAGCC
TTGTTTTGTCCGTCGAGGCTCTGGTGGGCCCATACCACATCGTGTGCGTG
CACGTGCGCAGCCCATGTTTTTTCATCTGCTTGTGTTGCACAAACGTTTG
CGATATTTGAACCAGTCCGTGAGGTCTGTTTAGGACGCAGGCCTGCTGCT
GCAGTATGGGTTCTGTGCATGGTGGCGTGAAGCCCCTGTTAGTCCCGAAC
AGGACACGGCGCTTTCACACACAACGTGGGCTTGCTGCTGCAATGCTCCT
TGGTGAAGCTAAATTCGACTGTATGTTGAATGCTCTGCCGCGCCACCACC
GTGACCGGTGTCCACGAGATCCCACGTTTGTCTCGCCCACGCCGCTCTCT
CCTTATCCCCGCCTCCACGCTCTTCTGTCCCCTTGCACCAGTTCCACATG
GCCCAGCAGCAGCAGCAGCGCTTCAACCCCCAGCCCGCCGGTTTCATGTT
CCAGCAACCCCAGCAACATCCCTTTGGTGACCTTGGAAACACGGGCGGCG
GAGGACCGCTTTCGGAGGTGGGCTCGATAGGCATGAACAACAACAGCAGC
AGGGGCAACAACAGCAACAGCATTCCGCTTCGCCCCGATGCGCAGCAACC
GTCCATGGTCATGACGGCCGGCGGCGTTACCGTCGGTGATCAAGTCCCTC
CAGGCGACGGTGGCGGTGGCAGCGGCAGGTTGGGGGGAGTGTATGGAAGT
GACGGTGGTAGCATGCCCTTTTCCCCATCCTCCACGTCGAATCCCCCCGG
TTCTGCTGACGTTGGCCCCCTGAGCGGCATGCCGGGAGGAGGCGGAAGGG
CTCAGCCGGAGCCCGAGTTCTCCCTCGGAGGCGGCGGCGGCGGCGGCAGC
GGGTACCCTGTCGGCCCCGGTCCCGACAGCGGCCGGCTATTCGGAGAGGG
CGACGCGGCCGCCGACGGTCGCGGTGTGCAGGACATGAACGCCGCCGCCG
CCGCCGCGTCGACGATGAAGGCGGTGTCGGGGGAGGGAGGTGTCGTCGGT
GGTGGTGTCTCCCGCTCCCCGGTGCAGACGGTCGTGGTCCCGTCGGAGCA
GGGGGAGTGGGTCATGTACACGTCCAAGGAGAACGGCAACAGGGCCTACT
GGCACAACGCCAAGCTGAACAAGACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11735:2406..4981-

>mRNA_Ecto-sp13_S_contig11735.1495.1 ID=mRNA_Ecto-sp13_S_contig11735.1495.1|Name=mRNA_Ecto-sp13_S_contig11735.1495.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1674bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11735:2406..4981- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGTTGATCGACAACCCGTTTCCCTCGTTCTCGCCACGCGGCTCGCC
GCAGCAGCACCATGGGGGGCAGCAACAACAGCATGATGCCTCCGGGCACG
TGGGAGGTGGAGGTGGCCGAGTAGAAAGAAACTCTGGCAATGGTGGCGGC
GGCGGTGGTAGTGGTGGTGGCGGCGGCGGCGGCGGTGGCGGCGGTGGCGG
CGGTGGCGGTGGTGGTGGTGGTGGTCGTCGAAAAGGCAACAGGCACCGCC
GTGGTAATGGTGGTGGCGGAGGCGGCGGCCCTGGTGACGGGGGCAGGCAA
AACAAGGACGGCGGCGATTCCAACGACCGAGACGTGCAGGACTTCATGCA
GGTGATCAAGCACCCGGGCGCTCCCGAGTCCGCGATCCAAATCCAGAAGA
AGTACGACCAGGACAAGAACAGCGACCGGTACCACCGCCAGATCCGCCAA
TTTCTGCAAGAGCACCGCAAGAGGCAACGGGCCAACGTCGCGCAGCAGCA
GCACCCGCAGCAGCTGGCTGCAGGCAACAACGACGGCATGGAATCCGGAG
GCGCCCTTGGGCAGCCAGGGGGAGGCCTCTTCATGCCCTCCGGCAGCGAC
GTGCTGAACGGAGAGGGTCCGACCATGGCCCCGTGGGCTGGTGGAGGAGC
AAGGGATGACATCCGCGACTCGGTAGTAGGAGCGGGTGGGCTTGCCGGTG
GAGCCGGCGACATCGAGCCTCCCCTTGATCAGGCTGGCAGGTGGTGTGAC
GTTGACGGCATTGTCAACAGCCCCGTTCCTACTGTGGCCGGAGCGCTGGG
CGTGCCCCCTCTCGGCGTAGACATGGGAGGCACTTCATCGTCCCTGCAGT
CCGGGCTTGGAGGGCTCACGCTTGACGGCGGAGGTGCCGGCCAGCCGTCG
TTGTCGAAGTATCAGCAGCAGCACCTCGATAGCCAGCAGTTCCACATGGC
CCAGCAGCAGCAGCAGCGCTTCAACCCCCAGCCCGCCGGTTTCATGTTCC
AGCAACCCCAGCAACATCCCTTTGGTGACCTTGGAAACACGGGCGGCGGA
GGACCGCTTTCGGAGGTGGGCTCGATAGGCATGAACAACAACAGCAGCAG
GGGCAACAACAGCAACAGCATTCCGCTTCGCCCCGATGCGCAGCAACCGT
CCATGGTCATGACGGCCGGCGGCGTTACCGTCGGTGATCAAGTCCCTCCA
GGCGACGGTGGCGGTGGCAGCGGCAGGTTGGGGGGAGTGTATGGAAGTGA
CGGTGGTAGCATGCCCTTTTCCCCATCCTCCACGTCGAATCCCCCCGGTT
CTGCTGACGTTGGCCCCCTGAGCGGCATGCCGGGAGGAGGCGGAAGGGCT
CAGCCGGAGCCCGAGTTCTCCCTCGGAGGCGGCGGCGGCGGCGGCAGCGG
GTACCCTGTCGGCCCCGGTCCCGACAGCGGCCGGCTATTCGGAGAGGGCG
ACGCGGCCGCCGACGGTCGCGGTGTGCAGGACATGAACGCCGCCGCCGCC
GCCGCGTCGACGATGAAGGCGGTGTCGGGGGAGGGAGGTGTCGTCGGTGG
TGGTGTCTCCCGCTCCCCGGTGCAGACGGTCGTGGTCCCGTCGGAGCAGG
GGGAGTGGGTCATGTACACGTCCAAGGAGAACGGCAACAGGGCCTACTGG
CACAACGCCAAGCTGAACAAGACG
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