mRNA_Ecto-sp13_S_contig1173.1492.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1173.1492.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 520 bits (1338), Expect = 8.050e-181 Identity = 258/275 (93.82%), Postives = 262/275 (95.27%), Query Frame = 2
Query: 167 MTPTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSLGDEDGPTLEVTSPASGDMATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFKIEEGDDGDXXXXXXXXXXXXXXXAFSLSYRF 991
MT TGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYL+ASSEAPS+GDEDGPTLEVTSPASGD+ATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADG+GDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTF IEEGDD DXXXXX AFSLSYRF
Sbjct: 1 MTRTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEGDDSDXXXXXED--------AFSLSYRF 267
BLAST of mRNA_Ecto-sp13_S_contig1173.1492.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 421 bits (1083), Expect = 1.440e-142 Identity = 200/207 (96.62%), Postives = 203/207 (98.07%), Query Frame = 2
Query: 167 MTPTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSLGDEDGPTLEVTSPASGDMATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 787
M TGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPM GTSGSGYKVRVWDIHDEEDADCSDEFYL+ASSEAPS+GDEDGPTLEVTSPASGD+ATTCGEYTVEFDYDNGVGS VDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS
Sbjct: 2 MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 208
BLAST of mRNA_Ecto-sp13_S_contig1173.1492.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 398 bits (1022), Expect = 3.780e-133 Identity = 194/250 (77.60%), Postives = 206/250 (82.40%), Query Frame = 2
Query: 167 MTPTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSLGDEDGPTLEVTSPASGDMATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFKIEEGDD 916
M TGFVALAC MLGAANAL+V TPS L V+ADRTYTVEWTG S RFEIDLY+CGSMCMED CGDWVTALCPYGE+GCPDNEGDYDIVMPEPM G S SGYKVRV D+ DE+ DCSD FYLMAS +AP G E G L VTSPA GD A EYTVEFDYDNGVGS VDRF+IDLY ADGDGDCGTYV SICDKP+IGCKDSMGDYDVEIP DT+AG+YKIRV RFED+ LY CSGTF I GDD
Sbjct: 1 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADS-GRFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGDD 249
BLAST of mRNA_Ecto-sp13_S_contig1173.1492.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 376 bits (965), Expect = 1.620e-124 Identity = 179/250 (71.60%), Postives = 205/250 (82.00%), Query Frame = 2
Query: 167 MTPTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSLGDEDGPTLEVTSPASGDMATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFKIEEGDD 916
M TGFVALACGMLG A+AL+V TP+ G V++ R YTVEW+GT S+ RFEIDLYYC SMCMED+CG+WVTALCPYGEDGCPDNEGDYDIVMPEPM GTSGSGYKVRV D+ DE+ +DCSDEFYLMA ++APS D GP + VTSP++GD A EYTVEFDYDNG+GSSV RFAIDLY A G GDCGT++ ++CDKPTIGCKDSMGDYDVEIP D +AG Y IRV FED+S+Y CS F+I DD
Sbjct: 2 MVRTGFVALACGMLGVASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGADD 251
BLAST of mRNA_Ecto-sp13_S_contig1173.1492.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 371 bits (953), Expect = 1.890e-122 Identity = 179/244 (73.36%), Postives = 202/244 (82.79%), Query Frame = 2
Query: 203 MLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSLGDEDGPTLEVTSPASGDMATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFKI----EEGDDGD 922
MLGAA+AL+V TP++G V+A R YTVEWTGT S+NR+EIDLYYCGSMCMED+CGDWVTALCPYGEDGCPDNEGDYDIVMPEPM GTSGSGYKVRV D+ D++ DCSDEFYLMA +EAPS GD GP + VTSP+SGD A EYTVEFDYDNG+GSSV RFAIDLY A G GDCGT++ ++CDKPTIGCKDSMGDYDVEIP D +AG Y IRV FEDDS+Y CS F+I + DDGD
Sbjct: 1 MLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADDSPDDGD 244
BLAST of mRNA_Ecto-sp13_S_contig1173.1492.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 331 bits (848), Expect = 5.350e-107 Identity = 165/249 (66.27%), Postives = 193/249 (77.51%), Query Frame = 2
Query: 167 MTPTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSLGDEDGPTLEVTSPASGDMATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFKIEEGD 913
M T F ALA GMLGAANAL+V +P+ G V+AD YTVEWTG +S R++IDLYYCGS+CMED+CGDWVTALCPYG+DGCPD +GDYD+VMPEPM GTS SGYKV V D DE D CS +F L+AS+EAP D G + VTSP+ GD A GEYTVEFDYDNG+GSSV+RFAIDLY + G GDCGTYV +ICDKP+IGCKDS GDYDV IP T++G Y IRV FEDD +Y CS +F+I G+
Sbjct: 1 MARTAFAALAFGMLGAANALEVVSPAAGDMVVADSAYTVEWTGATS-GRYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDM-GAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGGE 246
BLAST of mRNA_Ecto-sp13_S_contig1173.1492.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 330 bits (847), Expect = 8.100e-107 Identity = 167/246 (67.89%), Postives = 193/246 (78.46%), Query Frame = 2
Query: 167 MTPTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSLGDEDGPTLEVTSPASGDMATTCGEYTVEFDYDNGVGSSVDRFAIDLYR-ADGDGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFKI 901
M T F ALA GMLGAANAL+V +P+ G++VIADRTYTVEWTGTS D+RFEIDLYYCGS CMED+CGDWVTALCPYG DGCPD +GDYDIVMPEPM GTS SGYKV V D +DE CS +F L+AS++AP+ G E G +L VTSP+ GD A G YTVE+DY+NG+GSS DRFAIDLY G GDCGTYV ++CDKP+IGC DS GDYDVEIP DT AG Y +RV F DD ++ CS F+I
Sbjct: 1 MARTAFAALAFGMLGAANALEVVSPAAGISVIADRTYTVEWTGTS-DSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTS-SGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAG-EVGYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEI 243
BLAST of mRNA_Ecto-sp13_S_contig1173.1492.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 322 bits (825), Expect = 1.630e-103 Identity = 159/250 (63.60%), Postives = 189/250 (75.60%), Query Frame = 2
Query: 167 MTPTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSLGDEDGPTLEVTSPASGDMATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFKIEEGDD 916
M T F A+A GML AANAL+V +P G++V+ADR YTVEWTGT++ RFEIDLYYC S CM+D CGDWVTALCPYG DGCPD+ GDYDI+MPEPM GTS SGYKV V + DE D CSD+F L+AS +AP G E G +L VTSP+ GD A YTVE+DY+NG GSS DRFA+DLY G GDCGTYV ++CD+P+IGC DS GDYDVEIP DT AG Y IRV F+D+ +Y CS TF+++ DD
Sbjct: 1 MARTAFAAVAFGMLSAANALEVVSPDGGISVLADRAYTVEWTGTTT-GRFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAG-EMGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSDD 247
BLAST of mRNA_Ecto-sp13_S_contig1173.1492.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE) HSP 1 Score: 277 bits (708), Expect = 5.060e-86 Identity = 144/249 (57.83%), Postives = 171/249 (68.67%), Query Frame = 2
Query: 167 MTPTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSLGDEDGPTLEVTSPASGDMATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFKIEEGD 913
M T F ALA GMLGA NAL+V++P+ G ++A + TVEWTGTSS RF+IDLYYCGS+CMED+CGDWVTALCPYG+DGCPD +GDYD+VMPEPM GTS SGYKV V D DE D CS EF L+AS+ FD+DNG GSSV+RF+IDLY + G GDCGTYV SICDK +IGCKDS GDYDV IP DT++G Y IRV FED ++ CS +F+I G+
Sbjct: 1 MARTAFAALAFGMLGAVNALEVTSPAAGDMIVAASSTTVEWTGTSS-GRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDMGCSGEFTLVASAXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXFDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEIIGGE 246
BLAST of mRNA_Ecto-sp13_S_contig1173.1492.1 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE) HSP 1 Score: 281 bits (720), Expect = 1.390e-84 Identity = 135/191 (70.68%), Postives = 151/191 (79.06%), Query Frame = 2
Query: 350 MEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSLGDEDGPTLEVTSPASGDMATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFKIEEGDDGD 922
+ED+CG+WVTALCPYG +GCPDNEGDYDIVMPEPM GTSGSGYKVRV D+ +DADCSDEFYLMAS+EAP +G D P L VTSP++GD A GEYTVEFDYDNGVGS VDRF IDLY G GDCGT+V ++CDK IGCKDSMGDYDVEIP G Y IRV RFEDD+LY CSG F+I G+
Sbjct: 12 VEDECGEWVTALCPYGSEGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPYLMVTSPSAGDKAQAGGEYTVEFDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDALYGCSGEFEIVGSSSGE 202 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1173.1492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1173.1492.1 >prot_Ecto-sp13_S_contig1173.1492.1 ID=prot_Ecto-sp13_S_contig1173.1492.1|Name=mRNA_Ecto-sp13_S_contig1173.1492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=276bp MTPTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFback to top mRNA from alignment at Ecto-sp13_S_contig1173:14447..18321- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1173.1492.1 ID=mRNA_Ecto-sp13_S_contig1173.1492.1|Name=mRNA_Ecto-sp13_S_contig1173.1492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3875bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1173:14447..18321- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1173:14447..18321- >mRNA_Ecto-sp13_S_contig1173.1492.1 ID=mRNA_Ecto-sp13_S_contig1173.1492.1|Name=mRNA_Ecto-sp13_S_contig1173.1492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=828bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1173:14447..18321- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |