mRNA_Ecto-sp13_S_contig1173.1492.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1173.1492.1
Unique NamemRNA_Ecto-sp13_S_contig1173.1492.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1173.1492.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 520 bits (1338), Expect = 8.050e-181
Identity = 258/275 (93.82%), Postives = 262/275 (95.27%), Query Frame = 2
Query:  167 MTPTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSLGDEDGPTLEVTSPASGDMATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFKIEEGDDGDXXXXXXXXXXXXXXXAFSLSYRF 991
            MT TGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYL+ASSEAPS+GDEDGPTLEVTSPASGD+ATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADG+GDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTF IEEGDD DXXXXX          AFSLSYRF
Sbjct:    1 MTRTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEGDDSDXXXXXED--------AFSLSYRF 267          
BLAST of mRNA_Ecto-sp13_S_contig1173.1492.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI)

HSP 1 Score: 421 bits (1083), Expect = 1.440e-142
Identity = 200/207 (96.62%), Postives = 203/207 (98.07%), Query Frame = 2
Query:  167 MTPTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSLGDEDGPTLEVTSPASGDMATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 787
            M  TGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPM GTSGSGYKVRVWDIHDEEDADCSDEFYL+ASSEAPS+GDEDGPTLEVTSPASGD+ATTCGEYTVEFDYDNGVGS VDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS
Sbjct:    2 MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 208          
BLAST of mRNA_Ecto-sp13_S_contig1173.1492.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 398 bits (1022), Expect = 3.780e-133
Identity = 194/250 (77.60%), Postives = 206/250 (82.40%), Query Frame = 2
Query:  167 MTPTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSLGDEDGPTLEVTSPASGDMATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFKIEEGDD 916
            M  TGFVALAC MLGAANAL+V TPS  L V+ADRTYTVEWTG  S  RFEIDLY+CGSMCMED CGDWVTALCPYGE+GCPDNEGDYDIVMPEPM G S SGYKVRV D+ DE+  DCSD FYLMAS +AP  G E G  L VTSPA GD A    EYTVEFDYDNGVGS VDRF+IDLY ADGDGDCGTYV SICDKP+IGCKDSMGDYDVEIP DT+AG+YKIRV RFED+ LY CSGTF I  GDD
Sbjct:    1 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADS-GRFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGDD 249          
BLAST of mRNA_Ecto-sp13_S_contig1173.1492.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 376 bits (965), Expect = 1.620e-124
Identity = 179/250 (71.60%), Postives = 205/250 (82.00%), Query Frame = 2
Query:  167 MTPTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSLGDEDGPTLEVTSPASGDMATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFKIEEGDD 916
            M  TGFVALACGMLG A+AL+V TP+ G  V++ R YTVEW+GT S+ RFEIDLYYC SMCMED+CG+WVTALCPYGEDGCPDNEGDYDIVMPEPM GTSGSGYKVRV D+ DE+ +DCSDEFYLMA ++APS  D  GP + VTSP++GD A    EYTVEFDYDNG+GSSV RFAIDLY A G GDCGT++ ++CDKPTIGCKDSMGDYDVEIP D +AG Y IRV  FED+S+Y CS  F+I   DD
Sbjct:    2 MVRTGFVALACGMLGVASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGADD 251          
BLAST of mRNA_Ecto-sp13_S_contig1173.1492.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 371 bits (953), Expect = 1.890e-122
Identity = 179/244 (73.36%), Postives = 202/244 (82.79%), Query Frame = 2
Query:  203 MLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSLGDEDGPTLEVTSPASGDMATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFKI----EEGDDGD 922
            MLGAA+AL+V TP++G  V+A R YTVEWTGT S+NR+EIDLYYCGSMCMED+CGDWVTALCPYGEDGCPDNEGDYDIVMPEPM GTSGSGYKVRV D+ D++  DCSDEFYLMA +EAPS GD  GP + VTSP+SGD A    EYTVEFDYDNG+GSSV RFAIDLY A G GDCGT++ ++CDKPTIGCKDSMGDYDVEIP D +AG Y IRV  FEDDS+Y CS  F+I    +  DDGD
Sbjct:    1 MLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADDSPDDGD 244          
BLAST of mRNA_Ecto-sp13_S_contig1173.1492.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 331 bits (848), Expect = 5.350e-107
Identity = 165/249 (66.27%), Postives = 193/249 (77.51%), Query Frame = 2
Query:  167 MTPTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSLGDEDGPTLEVTSPASGDMATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFKIEEGD 913
            M  T F ALA GMLGAANAL+V +P+ G  V+AD  YTVEWTG +S  R++IDLYYCGS+CMED+CGDWVTALCPYG+DGCPD +GDYD+VMPEPM GTS SGYKV V D  DE D  CS +F L+AS+EAP   D  G  + VTSP+ GD A   GEYTVEFDYDNG+GSSV+RFAIDLY + G GDCGTYV +ICDKP+IGCKDS GDYDV IP  T++G Y IRV  FEDD +Y CS +F+I  G+
Sbjct:    1 MARTAFAALAFGMLGAANALEVVSPAAGDMVVADSAYTVEWTGATS-GRYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDM-GAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGGE 246          
BLAST of mRNA_Ecto-sp13_S_contig1173.1492.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI)

HSP 1 Score: 330 bits (847), Expect = 8.100e-107
Identity = 167/246 (67.89%), Postives = 193/246 (78.46%), Query Frame = 2
Query:  167 MTPTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSLGDEDGPTLEVTSPASGDMATTCGEYTVEFDYDNGVGSSVDRFAIDLYR-ADGDGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFKI 901
            M  T F ALA GMLGAANAL+V +P+ G++VIADRTYTVEWTGTS D+RFEIDLYYCGS CMED+CGDWVTALCPYG DGCPD +GDYDIVMPEPM GTS SGYKV V D +DE    CS +F L+AS++AP+ G E G +L VTSP+ GD A   G YTVE+DY+NG+GSS DRFAIDLY    G GDCGTYV ++CDKP+IGC DS GDYDVEIP DT AG Y +RV  F DD ++ CS  F+I
Sbjct:    1 MARTAFAALAFGMLGAANALEVVSPAAGISVIADRTYTVEWTGTS-DSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTS-SGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAG-EVGYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEI 243          
BLAST of mRNA_Ecto-sp13_S_contig1173.1492.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 322 bits (825), Expect = 1.630e-103
Identity = 159/250 (63.60%), Postives = 189/250 (75.60%), Query Frame = 2
Query:  167 MTPTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSLGDEDGPTLEVTSPASGDMATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFKIEEGDD 916
            M  T F A+A GML AANAL+V +P  G++V+ADR YTVEWTGT++  RFEIDLYYC S CM+D CGDWVTALCPYG DGCPD+ GDYDI+MPEPM GTS SGYKV V +  DE D  CSD+F L+AS +AP  G E G +L VTSP+ GD A     YTVE+DY+NG GSS DRFA+DLY   G GDCGTYV ++CD+P+IGC DS GDYDVEIP DT AG Y IRV  F+D+ +Y CS TF+++  DD
Sbjct:    1 MARTAFAAVAFGMLSAANALEVVSPDGGISVLADRAYTVEWTGTTT-GRFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAG-EMGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSDD 247          
BLAST of mRNA_Ecto-sp13_S_contig1173.1492.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE)

HSP 1 Score: 277 bits (708), Expect = 5.060e-86
Identity = 144/249 (57.83%), Postives = 171/249 (68.67%), Query Frame = 2
Query:  167 MTPTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSLGDEDGPTLEVTSPASGDMATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFKIEEGD 913
            M  T F ALA GMLGA NAL+V++P+ G  ++A  + TVEWTGTSS  RF+IDLYYCGS+CMED+CGDWVTALCPYG+DGCPD +GDYD+VMPEPM GTS SGYKV V D  DE D  CS EF L+AS+                                 FD+DNG GSSV+RF+IDLY + G GDCGTYV SICDK +IGCKDS GDYDV IP DT++G Y IRV  FED  ++ CS +F+I  G+
Sbjct:    1 MARTAFAALAFGMLGAVNALEVTSPAAGDMIVAASSTTVEWTGTSS-GRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDMGCSGEFTLVASAXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXFDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEIIGGE 246          
BLAST of mRNA_Ecto-sp13_S_contig1173.1492.1 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE)

HSP 1 Score: 281 bits (720), Expect = 1.390e-84
Identity = 135/191 (70.68%), Postives = 151/191 (79.06%), Query Frame = 2
Query:  350 MEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSLGDEDGPTLEVTSPASGDMATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFKIEEGDDGD 922
            +ED+CG+WVTALCPYG +GCPDNEGDYDIVMPEPM GTSGSGYKVRV D+   +DADCSDEFYLMAS+EAP +G  D P L VTSP++GD A   GEYTVEFDYDNGVGS VDRF IDLY   G GDCGT+V ++CDK  IGCKDSMGDYDVEIP     G Y IRV RFEDD+LY CSG F+I     G+
Sbjct:   12 VEDECGEWVTALCPYGSEGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPYLMVTSPSAGDKAQAGGEYTVEFDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDALYGCSGEFEIVGSSSGE 202          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1173.1492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JRG9_9PHAE8.050e-18193.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH21_ECTSI1.440e-14296.62Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus... [more]
D7FYL2_ECTSI3.780e-13377.60EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
A0A6H5JFT9_9PHAE1.620e-12471.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI46_ECTSI1.890e-12273.36EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G3E8_ECTSI5.350e-10766.27Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
D7G3F0_ECTSI8.100e-10767.89EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JY62_9PHAE1.630e-10363.60GPI-anchored domain-containing protein n=2 Tax=Ect... [more]
A0A6H5KP11_9PHAE5.060e-8657.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEJ8_9PHAE1.390e-8470.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1173contigEcto-sp13_S_contig1173:14447..18321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1775
Hectar predicted targeting categorysignal peptide
Exons5
Ec32 ortholog descriptionSecreted protein similar to EsV-1-163
Ec32 orthologEc-26_003200.1
Cds size828
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1173.1492.1prot_Ecto-sp13_S_contig1173.1492.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1173 15228..18155 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462617.779655-UTR-Ecto-sp13_S_contig1173:14446..152271681462617.779655-UTR-Ecto-sp13_S_contig1173:14446..15227Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1173 14447..15227 -
1681462617.8657227-UTR-Ecto-sp13_S_contig1173:18155..183211681462617.8657227-UTR-Ecto-sp13_S_contig1173:18155..18321Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1173 18156..18321 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462617.7923265-CDS-Ecto-sp13_S_contig1173:15227..154331681462617.7923265-CDS-Ecto-sp13_S_contig1173:15227..15433Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1173 15228..15433 -
1681462617.803817-CDS-Ecto-sp13_S_contig1173:15818..159541681462617.803817-CDS-Ecto-sp13_S_contig1173:15818..15954Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1173 15819..15954 -
1681462617.8221717-CDS-Ecto-sp13_S_contig1173:16551..168481681462617.8221717-CDS-Ecto-sp13_S_contig1173:16551..16848Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1173 16552..16848 -
1681462617.838901-CDS-Ecto-sp13_S_contig1173:17452..175371681462617.838901-CDS-Ecto-sp13_S_contig1173:17452..17537Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1173 17453..17537 -
1681462617.8566904-CDS-Ecto-sp13_S_contig1173:18051..181551681462617.8566904-CDS-Ecto-sp13_S_contig1173:18051..18155Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1173 18052..18155 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1173.1492.1

>prot_Ecto-sp13_S_contig1173.1492.1 ID=prot_Ecto-sp13_S_contig1173.1492.1|Name=mRNA_Ecto-sp13_S_contig1173.1492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=276bp
MTPTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRF
EIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTS
GSGYKVRVWDIHDEEDADCSDEFYLMASSEAPSLGDEDGPTLEVTSPASG
DMATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGDGDCGTYVQSICDKP
TIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFKIEEGDD
GDDDGDDEDDDEDDDEDAFSLSYRF*
back to top

mRNA from alignment at Ecto-sp13_S_contig1173:14447..18321-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1173.1492.1 ID=mRNA_Ecto-sp13_S_contig1173.1492.1|Name=mRNA_Ecto-sp13_S_contig1173.1492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3875bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1173:14447..18321- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCCATCCCTCACACTCCACACACACACCATCTCCTCCCACCACACCAC AACTCGAGCAACACACCAAGTTGCCAGCCGATCCTCGCGCACGCGTACCG CCGCTCCAAGACGCCAGCCAGACTCCGAACCTATCCTGATCCACTTTCGC AAGGATAAGAAAGAGGATGACTCCCACTGGATTCGTTGCTCTGGCCTGCG GCATGCTTGGCGCCGCCAACGCCCTCAAGGTGTCCACGCCGTCGAAAGGC CTCACCGTCATCGCGGACCGGTGAGAGAACAAAGCTTGCTCCCTCTGGCC GGGCACGCGACCGTTGCTGTAGCAGCGCCGTTGTCCACAAAGTCATCGGT CCACCTACCGAAACAAGCCGCATGTAGTACATCAAGTGACCGGGTGTCCC GATCCAACTACTGATGTGTCTATCTGTTGTTGAGTCCACTCGGGCGGATC TTCTGTATGCTGCATGCAGTCGTCGTCCTGTACGTCGTCGCCCCTTTTCA TCATTATTCCATGACGACATGCTGGACAGGGGCACCTGTAGCCGCGTCCA AGCCTCTGATACTCTCTCGCTTTTGAGAGCGACACACGAAGAGATAGACA GCTGCCCTTGTCATGATCGATGAAATGGTTCTAAAAATTTACTTCCACTA CACTTGTGTCCATAAAGAACGCTCAAATGCCCAGGTTTTTGGTAGCGATG TTCTTCCTACAGCAGTGTGAGCGGACTTGGGGTCGTAAAACATAGTCTCC ACACTTGCCTCGTCTTGCTGCTCGCGATTTGTAGGACCTACACCGTGGAG TGGACGGGCACTAGCTCAGACAACCGTTTCGAGATCGACCTCTACTACTG CGGCTCGATGTGCATGGAGGTGAGCAAGGTTCGGTTGGAGGTTGGAGGAC AGACGTGACAGCACCCTGGATCTTTTGTGTTCCGTGTTTCGGGGCCCGTT GTCCGCGGCGGGTCACGGTAAGATCGGTGCAACGTCTCGATAACATCCGA CAAGAGCATGAAGTGCGGCGGCACACGGCGCCCTACTGCCTGCGGCATCG TGATCTTGTCCATGTTGCCACGAAGCACGTAGACTGGTAGAAATGCGAGA GCTGCTTTATGTAGACTACATATACATGCCTCTTAGTGAAGGAGCCTCGT TCTCTGCATTCGTATGCAGTTGCTCCGTTCGTTTGTTATAGCAGCAGTGT GTTCTTGTGTTTGCAGAGTAAACACACGGCGGTGGTGGCCCCACCGTGAT CGTCGGTGATACGGACTGGCCTTTTTCAACTGTAGATTCTCTTGTTCAAA ACAGGTCGCTTTCAGTCGTTCCCCGGTCCAGCTCCAGCTAACAGCTGCTG TCAATAGTAACGTTACAAGCAGAATCTTCCATACCCGTTAGGACGGGAGA GTGCTCTCTTTTTTGCTCTCCGCCAACCATTTTGTCCAAATCCCCGCCGC TGCGATCGCTTCTCACAAAACAGGACGACTGCGGTGACTGGGTGACGGCC CTGTGTCCGTACGGCGAGGACGGCTGCCCGGACAACGAGGGCGACTACGA CATCGTCATGCCCGAGCCCATGCTCGGCACGTCCGGCTCGGGCTACAAGG TGCGCGTGTGGGACATCCATGACGAGGAGGACGCGGACTGCTCGGACGAG TTCTACCTGATGGCCTCGAGCGAGGCCCCCTCCCTGGGCGACGAGGACGG TCCGACCCTGGAGGTCACCTCGCCTGCCTCGGGCGACATGGCCACGACGT GCGGAGAGTATACCGTCGAGGTGAGAGGACGAACGCAGGCTTTGCTGTCC GTCGGGTTAGGTTCTTGTTTTCTTCAGTCACACACAATGTCACCACGATT CTTGAAAGAGACATTTAGCCTTCTCTGCACATGACACAAATGACGGCTCA TCAAATTCAATCGAGAAATTTTACCAAGAGTTTAGATAACCCTGTGTTTC CGTGATGTTCTGGTGGACATCGACCTTAAGTCAATTCAACATTTCATGAC AAAAGCGATCTACGCATACGTACACAACGTTCTGGGCGTGCCTAGCGCGC TTCTCCTTCAGTTGGTCCACTGCCAATCTCTCTTATGTCGAAGTGGTCCT CGGATGTTACACCCGAAACGAACGGTTGCCCAGGTTTGAGCCGTGTCAGG GTTTCCATCAATCAAACGGCTGGTTCGCGTCGTTTGTGTTACACCGACTC ATTCTTGAAGTTGATTTTGGAGGCTGTTGGGGCCAGGTCTTCGTGGCGCA TCCAGTCTTGTCGACGAGGTGGCACACACACACACCGTTCTTAGTTCCAC ATCCCGTCGGGCAATCTCTCAATCTCTCTCTCTTCTTCCTGTTGGATTCT CGTTGAACCGGCGGTAGTTCGACTACGACAACGGGGTGGGATCGAGCGTG GACCGGTTCGCGATAGACCTCTACCGTGCTGACGGAGACGGCGACTGCGG GACGTACGTGCAATCCATTTGCGACAAGCCTACCATCGGCTGCAAGGACT CAAGTGAGTTTTGTGTTCGGCCAGCGCGGCGTATGTGCGCTTGTTCCAAA TTGTCTCAACCGTGCGAGACAGCAGCCTCAACATCCCGCAAAGCAAGCGA TGTCAACCCTCAATCTGCGCACACGGAACGTGGAGAGAGTGCCGTTCTCA GTGAGTCGGCACTCTTTCTCACGCGCTTCCCCCCCCGGTCAACCTGCGAG AAAAAAACACTCGCTGCTCAAGGCACCACTGCAGTCTGTCGTCAGATACT GCACGAATGGTTTCTCTTGGTGCGCCTCTCACTTGCGGTTGTCTGGCAGT CGGTTGGTCCTGGAATCCACGATGTTGTCATACGCGAGAGGCATCTTCTA AAGTCCCCTTTTTTGTCCCCCCCCTTTTTCCTCGAAAGTGGGCGACTACG ACGTTGAGATCCCGTGCGACACGGACGCTGGAGAGTACAAGATTCGAGTA GCCCGCTTCGAGGACGATTCTCTCTACTCCTGCTCCGGTACCTTCAAGAT CGAGGAAGGCGACGACGGCGATGACGACGGCGATGACGAGGACGATGACG AGGACGATGACGAGGACGCCTTCAGCCTGTCGTACAGGTTCTAGATCCGG CAAACTTCATCTCATCTCTTCTTCACAATCTCTTGATAGGGTGTGTAGTT GGGTTTCTTTTCCACCGCGGTTCCGTGGTCGGTCGTGTCCGTTGGTGTTG CTCGTGTTTTCGGCTTGGGTTTTCGGAGAGGGGTGTGGGAGCAGGAGGTG ATGGGTGGGTGTGCAGGGAAGGAGACCCGACATGGATTAGGCGCGGAAGG AAGTGGGAGGAAATGCCGAAACGTGTCGTGGAGTCTTTTGTGGTGTCGAC TGATGTTTGTTTTTGTGCATTCCGTACTATATTTCGGCGGAACGGGTTGC AGGTATATCGATCAACCTGAGAGCTGCGTGTTAGCTACAGCTCTTGTCTG TTTCTTTGCTTAGCAGCGGCGGCGCTACACGAAATCATGTGGAGGAACCC TCAATCGCCTTGGCGAAAATGTTGCATTCCTGTTTTAATTTAGCTGCTGG CAACACCCGTGAATGTTGCCTTGTTTGGAGAACACGTTCTTGACCGTGCG CTCCGTCTTGGTACGGCGCCATTTTATTGTCATGGTGTCTCTTGCAACAA CTTTTGGCGGGGAGGAACTCGTGACGGGAACCCTCCCATCCCTTCCGTGG AAGATTTTCAAATTTCTTTCACTATGACACCCATCCATCTCGTGTTGTAC AATTATTGGTTGAGGACAGTGCGTTCGGTTGGGTTGGACCGAACATTTAG TGTTTGTAGGAGTTGTGGATAACCATCGCGTTGCATTGTTAGTCGTGAGT GTTGTTGTGGCCCATTCGTTGTACC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1173:14447..18321-

>mRNA_Ecto-sp13_S_contig1173.1492.1 ID=mRNA_Ecto-sp13_S_contig1173.1492.1|Name=mRNA_Ecto-sp13_S_contig1173.1492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=828bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1173:14447..18321- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTCCCACTGGATTCGTTGCTCTGGCCTGCGGCATGCTTGGCGCCGC
CAACGCCCTCAAGGTGTCCACGCCGTCGAAAGGCCTCACCGTCATCGCGG
ACCGGACCTACACCGTGGAGTGGACGGGCACTAGCTCAGACAACCGTTTC
GAGATCGACCTCTACTACTGCGGCTCGATGTGCATGGAGGACGACTGCGG
TGACTGGGTGACGGCCCTGTGTCCGTACGGCGAGGACGGCTGCCCGGACA
ACGAGGGCGACTACGACATCGTCATGCCCGAGCCCATGCTCGGCACGTCC
GGCTCGGGCTACAAGGTGCGCGTGTGGGACATCCATGACGAGGAGGACGC
GGACTGCTCGGACGAGTTCTACCTGATGGCCTCGAGCGAGGCCCCCTCCC
TGGGCGACGAGGACGGTCCGACCCTGGAGGTCACCTCGCCTGCCTCGGGC
GACATGGCCACGACGTGCGGAGAGTATACCGTCGAGTTCGACTACGACAA
CGGGGTGGGATCGAGCGTGGACCGGTTCGCGATAGACCTCTACCGTGCTG
ACGGAGACGGCGACTGCGGGACGTACGTGCAATCCATTTGCGACAAGCCT
ACCATCGGCTGCAAGGACTCAATGGGCGACTACGACGTTGAGATCCCGTG
CGACACGGACGCTGGAGAGTACAAGATTCGAGTAGCCCGCTTCGAGGACG
ATTCTCTCTACTCCTGCTCCGGTACCTTCAAGATCGAGGAAGGCGACGAC
GGCGATGACGACGGCGATGACGAGGACGATGACGAGGACGATGACGAGGA
CGCCTTCAGCCTGTCGTACAGGTTCTAG
back to top