mRNA_Ecto-sp13_S_contig1173.1490.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1173.1490.1
Unique NamemRNA_Ecto-sp13_S_contig1173.1490.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1173.1490.1 vs. uniprot
Match: D7FH23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH23_ECTSI)

HSP 1 Score: 996 bits (2574), Expect = 0.000e+0
Identity = 770/968 (79.55%), Postives = 787/968 (81.30%), Query Frame = 1 
Query:    1 MEARNVWVAWLALETLKAPLCGSFVLRQAPPPGRTKYEAAASPRCSAAAPRARCSCLRSLHDPLLRPLLRSPRASSFARAPLSGTADDDNIGGDGIGKPGDKPPAAASDFDSDETGGVGTATGRAAVSTDVATETRRLMSAPTIDIKLELQMRGVEHRDAFEKADLARRLAEARVFCRGNNPSPCPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---TEGRGAASDGGSSSAYARDVARGTRMGKAALARELNGMGIAHSRLSDVSVLARQYAARRQEAREDARRFPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVA--GWGDAREERAASELPWSFDKXXXXXXXXXXXXXXXXXXXXXXXXXXXDAGFPLGXXXXXXVGDDGGSETGWSTRANAGSAATA-GDDGGDKERSRKAVLHARADRLSSRELMKALDGLGARYRIPAPRAELQQAFVSAVLAAEEDERSQADATAAASGTRGEKIIPVSPYDAPLEEGDGGLLGTQGFGTYHSALRWARQLNFDDVLDELRYRGVEHSPRADYSYLTRLLADEVLXXXXXXXXXGGPEAGADAYTAEVEAAMSMSAQEMIRDLRAGGEIADVTLSKEALAERLAEMKLRLRGEPLAHSGSSAAYSYRGSPXXXXXXXXXXXXXXST--EARGPADPLGRRDGDEDVLLELEEAAKSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSASPSAAGRXXXXXXXXXXXXXGEQETERSRQVRAARERAGGVRRAATGYAQSSVNRAGFAVLQSLANGLLRGAEAAADWAGDGALAREFGRVAAQKLVLEGWKMERAKRXXXXXXXXXXXXXXXXXXXXXXXXXXTASRRGTSGYTAAPAGRRXXXXXXXXXXXXXXXXXXDARKKKGKERGSARSRRTKKPARKPLWEESDDDDRGCVVM 2880
            MEARNVWVAWLALETLKAPLCGSFVL+QAPPPGRTKYE AA  RCSAA PRARCSC R LHDPLLRPLLRSPRASS A APLSGTADDD +G DG+GK GDKPPAA+S   S ETGGVGTATG AAV TDVATETRRLMS PTIDIKLELQMRGVEHRDAFEKADLARRLAEARV   GNNPSP PDXXXXXXXXXXXXXXX                                        TEGRGAA DGGS+ AYARDVARGTRMGKAALARELNGMGIAHSRLSD+SVLARQYAARRQEAREDARRFP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    GWGDAR +RAAS LPW F K  XXXXXXX                  DA FPLG      VG+DG SETGWSTRANAGSAATA G  GGDKERSRKAVLHARADR+SSRELMKALDGLGARYRIPAPRAELQQAFVSAVLAAEEDERSQADATAAA+GTRG+ I+ VSPYD P+EEGDGGL GTQGFGTYHSALRWARQLNFDDVLDELRYRGVE SPRADYSYLTRLLADEVL         GGPE GADAYTAE+EAAMSMSAQEMIRDLRAGGEIADVTLSKEALAERLAEMKLRLRGEPL HSGSSA+       XXXXXXXXXXXXXX    EARGPADPLGR                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          XXXXXXXXXXXXX  QETERSRQVRAAR+RAGGVRRAATGYAQSSVNRAGFAVLQSLANGLLRGAEAAADWAGDGALAREFGR+AAQKLVLEGWKMERAKR XXXXXXXXXXXXXXX          T SRR TSGY AAPAGRRXXXXXXXXXXXXXXXXX  A KKKGKERGSAR  RTKKPARKPLWEESDDDDRGCVVM
Sbjct:    1 MEARNVWVAWLALETLKAPLCGSFVLQQAPPPGRTKYEPAAGSRCSAATPRARCSCSRGLHDPLLRPLLRSPRASSSAIAPLSGTADDDTLGRDGVGKAGDKPPAASSGS-SHETGGVGTATGEAAVGTDVATETRRLMSEPTIDIKLELQMRGVEHRDAFEKADLARRLAEARVSSCGNNPSPSPDXXXXXXXXXXXXXXXAGRDFGGAAADGPRENAHRSNKASTMMGNEPQAAAATAVATEGRGAAPDGGSNRAYARDVARGTRMGKAALARELNGMGIAHSRLSDLSVLARQYAARRQEAREDARRFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGWGDARGQRAASGLPWRFGKEEXXXXXXXEAAGVG------------DADFPLGGGGRDDVGEDGRSETGWSTRANAGSAATADGXGGGDKERSRKAVLHARADRMSSRELMKALDGLGARYRIPAPRAELQQAFVSAVLAAEEDERSQADATAAAAGTRGKNIVAVSPYDTPIEEGDGGLRGTQGFGTYHSALRWARQLNFDDVLDELRYRGVEQSPRADYSYLTRLLADEVLADEELMGGEGGPE-GADAYTAELEAAMSMSAQEMIRDLRAGGEIADVTLSKEALAERLAEMKLRLRGEPLPHSGSSASXXXXXXXXXXXXXXXXXXXXXXXXXEARGPADPLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-QETERSRQVRAARQRAGGVRRAATGYAQSSVNRAGFAVLQSLANGLLRGAEAAADWAGDGALAREFGRIAAQKLVLEGWKMERAKRRXXXXXXXXXXXXXXXAVDGDGA---TGSRRDTSGYAAAPAGRRXXXXXXXXXXXXXXXXXKGASKKKGKERGSAR--RTKKPARKPLWEESDDDDRGCVVM 948
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1173.1490.1 vs. uniprot
Match: A0A6H5JDP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDP5_9PHAE)

HSP 1 Score: 915 bits (2365), Expect = 0.000e+0
Identity = 742/983 (75.48%), Postives = 752/983 (76.50%), Query Frame = 1 
Query:   49 KAPLCGSFVLRQAPPPGRTKYEAAASPRCSAAAPRARCSCLRSLHDPLLRPLLRSPRASSFARAPLSGTADDDNIGGDGIGKPGDKPPAAASDFDSDETGGVGTATGRAAVSTDVATETRRLMSAPTIDIKLELQMRGVEHRDAFEKADLARRLAEARVFCRGNNPSPCPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEGRGAASDGGSSSAYARDVARGTRMGKAALARELNGMGIAHSRLSDVSVLARQYAARRQEAREDARRFPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGWGDAREERAASELPWSFDKXXXXXXXXXXXXXXXXXXXXXXXXXXXDAGFPLGXXXXXXVGDDGGSETGWSTRANAGSAATAGDDGG----DKERSRKAVLHARADRLSSRELMKALDGLGARYRIPAPRAELQQAFVSAVLAAEEDERSQADATAAASGTRGEKIIPVSPYDAPLEEGDGGLLGTQGFGTYHSALRWARQLNFDDVLDELRYRGVEHSPRADYSYLTRLLADEVLXXXXXXXXXGGPEAGADAYTAEVEAAMSMSAQEMIRDLRAGGEIADVTLSKEALAERLAEMKLRLRGEPLAHSGSSAAYSYRGSPXXXXXXXXXXXXXX---STEARGPADPLGRRDGDEDVLLELEEAAKSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSASPSAAGRXXXXXXXXXXXXXGE-QETERSRQVRAARERAGGVRRAATGYAQSSVNRAGFAVLQSLANGLLRGAEAAADWAGDGALARE----------------------------FGRVAAQKLVLEGWKMERAKRXXXXXXXXXXXXXXXXXXXXXXXXXXTASRRGTSGYTAAPAGRRXXXXXXXXXXXXXXXXXXDARKKKGKERG---SARSRRTKKPARKPLWEESDDDDRGCVVM 2880
            +APLCGSFVL+QAP PGRTKYEAAA PRCSAAAPRARCSCL  LHDPLLRPLLRSPRASS A APLSGTADDD IGGDG+GKPGDKPP A SDFDSDETGGVGTATGRAAVSTDVATETRRLMS PTIDIKLELQMRGVEHRDAFEKADLARRLAEARV C GNNPSP  DXXXXXXXXXXXXXXX                                     TEGRGAASDG SSSAYARDVARGTRMGKAALARELNGMGIAHSRLSDVSVLARQYAARRQEAREDARRFPP                                                  +S L  S   XXXXXXXXXXXXXXXXXXXXXXXXXXX       XXXXXX        TGWSTRAN                D ERSRKA LHARADRLSSRELMKALD LGA+YRIPAPRAELQQAFVSAVLAAEEDERSQADATAAASG+RGE I+PVSPYDAPLEEGDGGL GTQGFGTYHSALRWARQLNFDDVLDEL+YRGVEHSPRADYSYLTRLLADEVL         GGPE GADAYTAE+EAAMSMSAQEMIRDLRAGGEIADVTLSKEALAERLAEMKLRLRGEPL HSGSS         XXXXXXXXXXXXXX   STE R PADPLGRRDGD DVLLELEEAAKSVG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          XXXXXXXXXXXXX   QETERSRQVRAARERAGGVRRAATGYAQSSVNRAGFAVLQSLANGLLRGAEAAADWAGDGALARE                            FGR+AAQKLVLEGWKMERAKRXXXXXXXXXXXXXXXXXXXXXXXX  TASRR TSGYTAAPAGR  XXXXXXXXXXXXXXXXX              SARSRRTKKPARKPLWEESDDDDRGCVVM
Sbjct:    8 QAPLCGSFVLQQAPSPGRTKYEAAAGPRCSAAAPRARCSCLWGLHDPLLRPLLRSPRASSSAIAPLSGTADDDTIGGDGVGKPGDKPPGADSDFDSDETGGVGTATGRAAVSTDVATETRRLMSVPTIDIKLELQMRGVEHRDAFEKADLARRLAEARVSCCGNNPSPSHDXXXXXXXXXXXXXXXLGGAAAHGPRESAHRSNKASTTTGNEPQAAAATAVP-TEGRGAASDGCSSSAYARDVARGTRMGKAALARELNGMGIAHSRLSDVSVLARQYAARRQEAREDARRFPP--------------------------------------------------SSALDGSISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------TGWSTRANXXXXXXXXXXXXXXXXDMERSRKAALHARADRLSSRELMKALDALGAQYRIPAPRAELQQAFVSAVLAAEEDERSQADATAAASGSRGENIVPVSPYDAPLEEGDGGLRGTQGFGTYHSALRWARQLNFDDVLDELKYRGVEHSPRADYSYLTRLLADEVLADEELMGGEGGPE-GADAYTAELEAAMSMSAQEMIRDLRAGGEIADVTLSKEALAERLAEMKLRLRGEPLPHSGSSXXXXXXXXXXXXXXXXXXXXXXXXXXSTEGREPADPLGRRDGDGDVLLELEEAAKSVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQETERSRQVRAARERAGGVRRAATGYAQSSVNRAGFAVLQSLANGLLRGAEAAADWAGDGALAREYVLLFIAAFCLVFKRGVGAAVALLVVIRFGRIAAQKLVLEGWKMERAKRXXXXXXXXXXXXXXXXXXXXXXXX--TASRRFTSGYTAAPAGRHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSARSRRTKKPARKPLWEESDDDDRGCVVM 929
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1173.1490.1 vs. uniprot
Match: A0A836CCS4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCS4_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 8.520e-6
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:  412 LMSAPTIDIKLELQMRGVEHRDAFEKADLARRLAEARV 525
            +M+ PTIDIKLELQMRG++HRDA EK +LARRLA+AR 
Sbjct:   82 IMTMPTIDIKLELQMRGIDHRDALEKQELARRLAQARA 119
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1173.1490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FH23_ECTSI0.000e+079.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDP5_9PHAE0.000e+075.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CCS4_9STRA8.520e-673.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1173contigEcto-sp13_S_contig1173:1836..7164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2883
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_003220.1
Cds size2883
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1173.1490.1prot_Ecto-sp13_S_contig1173.1490.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1173 1836..7164 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462617.6160116-CDS-Ecto-sp13_S_contig1173:1835..22081681462617.6160116-CDS-Ecto-sp13_S_contig1173:1835..2208Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1173 1836..2208 -
1681462617.6305666-CDS-Ecto-sp13_S_contig1173:2292..29001681462617.6305666-CDS-Ecto-sp13_S_contig1173:2292..2900Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1173 2293..2900 -
1681462617.6407468-CDS-Ecto-sp13_S_contig1173:3741..38541681462617.6407468-CDS-Ecto-sp13_S_contig1173:3741..3854Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1173 3742..3854 -
1681462617.6494308-CDS-Ecto-sp13_S_contig1173:4531..51611681462617.6494308-CDS-Ecto-sp13_S_contig1173:4531..5161Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1173 4532..5161 -
1681462617.6582253-CDS-Ecto-sp13_S_contig1173:5267..63751681462617.6582253-CDS-Ecto-sp13_S_contig1173:5267..6375Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1173 5268..6375 -
1681462617.666586-CDS-Ecto-sp13_S_contig1173:7113..71641681462617.666586-CDS-Ecto-sp13_S_contig1173:7113..7164Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1173 7114..7164 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1173.1490.1

>prot_Ecto-sp13_S_contig1173.1490.1 ID=prot_Ecto-sp13_S_contig1173.1490.1|Name=mRNA_Ecto-sp13_S_contig1173.1490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=961bp
MEARNVWVAWLALETLKAPLCGSFVLRQAPPPGRTKYEAAASPRCSAAAP
RARCSCLRSLHDPLLRPLLRSPRASSFARAPLSGTADDDNIGGDGIGKPG
DKPPAAASDFDSDETGGVGTATGRAAVSTDVATETRRLMSAPTIDIKLEL
QMRGVEHRDAFEKADLARRLAEARVFCRGNNPSPCPDDDDDATTTITKAA
GRKIGGAAADGPRENAHRSNEASTTTGKKPQAAAATAVATEGRGAASDGG
SSSAYARDVARGTRMGKAALARELNGMGIAHSRLSDVSVLARQYAARRQE
AREDARRFPPSTARAGSSSSAEEDSEGGGEGRLEGKKGSGRRRGGGEEVA
GWGDAREERAASELPWSFDKKEEEDDDEEDEAGGGGGGGGGGGGGGGDAG
FPLGGGGRDDVGDDGGSETGWSTRANAGSAATAGDDGGDKERSRKAVLHA
RADRLSSRELMKALDGLGARYRIPAPRAELQQAFVSAVLAAEEDERSQAD
ATAAASGTRGEKIIPVSPYDAPLEEGDGGLLGTQGFGTYHSALRWARQLN
FDDVLDELRYRGVEHSPRADYSYLTRLLADEVLADEELMGEEGGPEAGAD
AYTAEVEAAMSMSAQEMIRDLRAGGEIADVTLSKEALAERLAEMKLRLRG
EPLAHSGSSAAYSYRGSPPPPQGRARGGGGGGSTEARGPADPLGRRDGDE
DVLLELEEAAKSVGGAALLVAREAAAFVSETAAGFFPPPPADDNDGGRSA
SPSAAGRGGRGGGGGGGGGDGEQETERSRQVRAARERAGGVRRAATGYAQ
SSVNRAGFAVLQSLANGLLRGAEAAADWAGDGALAREFGRVAAQKLVLEG
WKMERAKRRRATEDGGSGGGGGSSTAAGVGGGGATASRRGTSGYTAAPAG
RRRRRPRPEKETETRRPRPKDARKKKGKERGSARSRRTKKPARKPLWEES
DDDDRGCVVM*
back to top

mRNA from alignment at Ecto-sp13_S_contig1173:1836..7164-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1173.1490.1 ID=mRNA_Ecto-sp13_S_contig1173.1490.1|Name=mRNA_Ecto-sp13_S_contig1173.1490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5329bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1173:1836..7164- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGCCCGCAACGTGTGGGTCGCTTGGCTTGCGCTCGAAACACTGAA
GGTGGATTTTACGACGTGCTTGAAGAGCAAGGACATGTGTTGTTTTGAAA
TTCGAAGCCAAGTCATTGTGCGACCGCCCTCGGTTCCCCTGCGCCCCTTG
CGAAAGAGGGGCTGCATCTTGAGTGAATCGTAGAGAAGAAGGTACTGTTG
TGCACACGAATGTTATGTAAGCATAAGGCACACTAGGGAACTAGGGTCGT
TTGCATTGGAGTTGACGTGGGGTCCAGCTGCGGCGCCGGGCCATGTTGCC
GGCAAGCACGGTGGGGCCGCCGACCTTTGCCGACCTCCTTCACAGCAGTT
CACCCCTTCCGTCCTCAACAACAGCGATTCATGGCATGAAGCTGGTGAAA
CTGCACAGGCTGTGGTTCTAATCAATCTCTGACGCGTTGAAGCTGTCGAT
GTCCGGTAAGAAGCCACGAAAGCTGCATTTCCGAACACACACATCAGTTA
GTTGCTGTTACAGCTGCCGCCGCTGGCTGCGGTTGGTAGTACTGTGAGTG
TAAGATCTGTCCCGACAAGTGCATGAATACAACGACGGCTTGAACAAAAT
TGCGGTCAGAGCACATGTTAGCGGTCCCCCATATATTCAATGAAGACCCT
CCTGGGTACTCAAATAAAATCGTTTCCTGGCACTCAATTACAAATCACGC
GTAATCTTTGGTGCGCACGAAGGGCAGATGTGCAACTTAAAACTTCCGGT
TGCAACAATCTCCAACCGTCCTGCTGTTCCATTTCGCAGGCCCCCCTTTG
CGGGTCTTTCGTGCTCCGACAAGCCCCGCCCCCCGGTCGTACCAAATACG
AAGCGGCGGCGAGCCCCCGCTGCTCCGCAGCAGCTCCTCGGGCGCGCTGC
TCTTGCTTACGGAGCCTCCATGACCCCCTTCTTCGCCCGCTTTTGCGGAG
CCCCCGAGCATCCTCCTTCGCCAGAGCACCTCTCTCGGGAACGGCCGACG
ACGACAACATAGGCGGAGACGGGATTGGGAAGCCCGGCGATAAGCCGCCA
GCCGCCGCCAGCGACTTCGACAGCGACGAAACGGGCGGTGTAGGTACAGC
AACGGGTAGGGCGGCGGTGTCGACCGATGTGGCCACGGAGACGCGGCGCC
TCATGTCGGCGCCGACGATCGACATCAAGCTCGAGCTGCAGATGCGGGGT
GTGGAGCACCGCGACGCGTTCGAGAAGGCGGACCTCGCCAGGCGCCTCGC
CGAGGCCCGCGTTTTTTGTCGCGGCAACAACCCTTCCCCTTGCCCTGATG
ATGACGATGATGCCACAACTACTATCACCAAAGCGGCAGGACGCAAAATC
GGCGGTGCCGCCGCGGACGGGCCGAGAGAGAACGCGCATCGAAGCAACGA
GGCATCAACGACGACGGGCAAGAAACCACAAGCAGCGGCAGCAACGGCAG
TAGCTACGGAAGGCAGGGGGGCTGCATCGGATGGTGGTAGTAGTAGCGCA
TACGCCCGCGACGTGGCGCGGGGGACGCGCATGGGGAAGGCCGCCCTGGC
GCGGGAGCTGAACGGGATGGGGATCGCGCACTCGCGCCTGTCGGACGTGT
CTGTCTTGGCTCGCCAGTACGCCGCCAGGCGGCAGGAGGCGCGGGAGGAT
GCGCGTCGATTTCCACCCAGCACCGCACGGGCCGGCAGTAGCTCTTCCGC
GGAGGAGGACAGCGAGGGCGGTGGTGAAGGGCGGCTAGAGGGCAAGAAGG
GCTCGGGTCGTCGGCGGGGGGGCGGGGAGGAGGTGGCGGGGTGGGGTGAT
GCGCGAGAGGAACGGGCCGCCTCTGAGCTTCCTTGGAGCTTCGACAAGAA
AGAGGAAGAGGACGACGATGAGGAGGATGAGGCGGGGGGGGGGGGGGGTG
CCGGTTTTCCGCTTGGGGGNNNNNNNNNNGGGGGGCGGGGGGGGAGGCGG
GCGCGGCGGGCGGGGGCCGGGGGGGGGGGGAGAAAGGGAGGGGGGGGGGG
GAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGATGCCGGTTTTCCG
CTTGGAGGAGGCGGTAGGGATGATGTCGGCGATGACGGCGGGTCCGAAAC
GGGCTGGTCAACTCGCGCCAACGCTGGGAGCGCCGCCACTGCCGGCGACG
ACGGCGGCGATAAGGAACGCAGCAGGAAGGCGGTCCTCCACGCCCGGGCC
GATCGCCTGAGCTCCCGCGAGCTCATGAAGGCCCTGGACGGACTGGGCGC
GCGGTACAGGATCCCGGCGCCTCGGGCGGAGCTCCAGCAGGCGTTCGTGT
CCGCGGTGTTGGCGGCGGAGGAGGACGAGCGCAGCCAGGCCGACGCTACG
GCGGCGGCGTCGGGGACAAGAGGGGAGAAGATAATCCCGGTCAGCCCGTA
CGACGCGCCGCTCGAGGAAGGCGACGGGGGGCTCCTCGGTACGCAGGGGT
TCGGCACGTACCACTCCGCTCTCCGGTGGGCGCGGCAGCTGAACTTCGAC
GACGTGCTGGACGAGCTGAGGTACAGGGGGGTGGAGCACAGCCCCAGGGC
CGACTACAGCTACTTGACTCGGCTGCTAGCGGACGAGGTGCTCGCCGACG
AGGAGCTCATGGGAGAGGAAGGGGGACCGGAAGGTGTGGCTTATGGCAGA
ACGTGGTGTTGATTTTCTTGCAGGCTCCTGGCAGCATCGCTCGAAACCAC
ACCGGTTGAGTGTCACCGCAGTACAGGTGGTGTTTTCGTGCCGCTGGTTG
CAACGGTTCGGGGCAACACGAAGCCTCGCAAATTCAAGCGAGTTTGATAG
AGGTGGAGGAGGCGGCTTGCCTTTTTGGTTTGCAACCGCACCAGGGCCGC
TTGCGAGGCAGACGACTTGATTTTTAGAGATTTGGGCGGATGACGGTGTG
AAAGGATGCGTTGCGATGCAATGGTTTGAAAGTGGCATCGGAATGGTTGA
TCTGTCTACCAGGCGTTGTGGTCTAGGTAAGGGTACACGGTTTCTGGCAC
GGACGCTTCGACGTGATGTTCTGGAGGTTTTTTTCTCTGGAATAACTTCG
TTGCCACCTCCTCTGCAGCGGTAGAAGCTGGTCGCGACTTTCCCGCTAAA
TTTCTCCTTCCTGCTGATCCGACGCCCTGGCAAGCACGTTGCCCAACACC
TTCAAGCAGGATACCACTCGAAATCCAACCTTTTGCCCCCTTTCCTCTTG
TTGACGAAACCAAACGTTCGACCTTTTCCCCCATCCCCCACGGCTTCTTG
TTGACCAAACCAAGCATCCAATTAACCATTTCCTTGGCCTCTTGTTCGAA
CCAACACCAGCAGGAGCAGACGCGTACACGGCAGAGGTAGAAGCGGCCAT
GTCCATGAGCGCCCAGGAGATGATCCGTGACCTTCGCGCTGGCGGAGAAA
TTGCCGACGTTACCCTTAGCAAGGTATATAATACAGGCACATTTTGGAAG
GTGCCAGCAAGCTCGAGTGTAGACGTACGTACGTACTTGTCTACCGCCTT
TTGTACCCCGGGACCTGGTTGCGTGTGACGTGTGCACGATGATGGTACAA
GCCTTTCTTTCTCGACACCTGCTGCTGCTGCGGCTGATTGATCTACAGTA
GTCACATTCGTCTCAGTGTCGACAAACCCCCCTCGTACGGGTTTCCGTAA
CAATCCTGCTTGGAAGGTCTTGTTGCAAGAGGATGAGTTGGTGGTAGTGC
TTCTTGCCGAGACACATTTTCCGGGGAGTGTGCGAGAAGTGCAAGACCGT
GCAGAAAGCCACGAGTGGCGTTTTGGCGTATTTGTACTCACTCGTCCCCG
ACATCTTCCTTCTTGCTGGAGTGCCGTAAGGGGCGAGAATATACGTGTAT
GGCACACGCCCTAGACCCATTTTCAAAGCTCGATTGCTCCATAGCGAAGA
TTGTGCCCCAACACCGAAAATAGTGGCTTTGGAATCATCCCTTCGAGGGC
TCTTTCCGCACCTCCGTCGTCGTAGAGCAATCGAGCGAAAAAGTCGGTCT
AGGGGGGGTGCCATTTCTATCTCTCTCTCTCTCTCTCTCTCCGCCTCTCG
CGGAATTATACAGCAGAGCAGTTGCGGTTTCTGGCAAAAAGTCAGTCGAA
CCCGTGCTTTGAAAGCGACATCCACGGCATGTTGGGTGGAACCGAATGGG
GCCCATTCCGCCGTGTACACGATAGCAATCCTGCTCCCACCACCTCTGAA
GTTATACGTTTCGCATTGCGTGCTGGTGTTGTCCGACCCGCTTGTTCACG
CCACCTGGAACCAGGAAGCGCTCGCCGAGAGGCTGGCCGAGATGAAGCTG
CGTCTCCGCGGGGAGCCGCTGGCCCACAGCGGAAGCAGCGCCGCCTACTC
TTACCGCGGCAGCCCACCACCGCCGCAAGGCCGGGCACGCGGCGGCGGCG
GCGGCGGTAGCACGGAGGCTAGAGGACCGGCGGACCCGCTCGGCCGCCGT
GACGGCGATGAAGACGTGCTACTGGAGCTGGAGGAGGCGGCCAAGTCGGT
CGGGGGCGCGGCACTCCTGGTCGCCAGAGAAGCGGCGGCCTTCGTCTCCG
AAACCGCGGCCGGCTTCTTCCCCCCTCCCCCCGCCGACGACAACGACGGA
GGTCGGAGCGCTTCGCCGTCGGCAGCGGGGAGAGGGGGGCGAGGAGGGGG
GGGCGGCGGCGGCGGCGGCGACGGCGAGCAAGAGACGGAGCGGTCGCGGC
AGGTGCGAGCCGCGAGGGAGCGGGCGGGCGGAGTGCGGAGGGCCGCGACG
GGGTATGCTCAGAGCTCGGTCAACCGGGCCGGGTTCGCGGTCCTGCAGAG
CCTGGCGAACGGGCTGCTGAGGGGCGCGGAGGCGGCGGCCGACTGGGCGG
GGGACGGCGCGCTCGCCCGCGAGTACGTGCTGCTGTTCATCGCGGCCTTC
TGCCTGGTGTTCAAGAGGGGGGTGGGGGCGGCGGTTGCGTTGTTGGTGGT
GATCAGATTCGGCCGCGTCGCTGCCCAGAAGCTGGTCTTGGAGGGGTGGA
AGATGGAGCGGGCGAAGAGAAGGCGCGCAACGGAAGACGGCGGCAGCGGC
GGCGGCGGCGGTAGTAGTACCGCTGCTGGGGTGGGTGGGGGCGGTGCGAC
CGCATCTAGGCGAGGTACGTCAGGGTACACCGCTGCTCCCGCTGGCCGCC
GCCGCCGCCGGCCGCGACCCGAGAAGGAGACGGAGACGAGGCGCCCTCGA
CCAAAGGATGCCAGAAAGAAGAAGGGGAAAGAACGGGGTTCGGCGCGTTC
GAGAAGGACCAAGAAGCCCGCGAGAAAGCCCTTGTGGGAAGAATCGGACG
ACGACGACAGAGGCTGTGTGGTGATGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1173:1836..7164-

>mRNA_Ecto-sp13_S_contig1173.1490.1 ID=mRNA_Ecto-sp13_S_contig1173.1490.1|Name=mRNA_Ecto-sp13_S_contig1173.1490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2883bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1173:1836..7164- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGCCCGCAACGTGTGGGTCGCTTGGCTTGCGCTCGAAACACTGAA
GGCCCCCCTTTGCGGGTCTTTCGTGCTCCGACAAGCCCCGCCCCCCGGTC
GTACCAAATACGAAGCGGCGGCGAGCCCCCGCTGCTCCGCAGCAGCTCCT
CGGGCGCGCTGCTCTTGCTTACGGAGCCTCCATGACCCCCTTCTTCGCCC
GCTTTTGCGGAGCCCCCGAGCATCCTCCTTCGCCAGAGCACCTCTCTCGG
GAACGGCCGACGACGACAACATAGGCGGAGACGGGATTGGGAAGCCCGGC
GATAAGCCGCCAGCCGCCGCCAGCGACTTCGACAGCGACGAAACGGGCGG
TGTAGGTACAGCAACGGGTAGGGCGGCGGTGTCGACCGATGTGGCCACGG
AGACGCGGCGCCTCATGTCGGCGCCGACGATCGACATCAAGCTCGAGCTG
CAGATGCGGGGTGTGGAGCACCGCGACGCGTTCGAGAAGGCGGACCTCGC
CAGGCGCCTCGCCGAGGCCCGCGTTTTTTGTCGCGGCAACAACCCTTCCC
CTTGCCCTGATGATGACGATGATGCCACAACTACTATCACCAAAGCGGCA
GGACGCAAAATCGGCGGTGCCGCCGCGGACGGGCCGAGAGAGAACGCGCA
TCGAAGCAACGAGGCATCAACGACGACGGGCAAGAAACCACAAGCAGCGG
CAGCAACGGCAGTAGCTACGGAAGGCAGGGGGGCTGCATCGGATGGTGGT
AGTAGTAGCGCATACGCCCGCGACGTGGCGCGGGGGACGCGCATGGGGAA
GGCCGCCCTGGCGCGGGAGCTGAACGGGATGGGGATCGCGCACTCGCGCC
TGTCGGACGTGTCTGTCTTGGCTCGCCAGTACGCCGCCAGGCGGCAGGAG
GCGCGGGAGGATGCGCGTCGATTTCCACCCAGCACCGCACGGGCCGGCAG
TAGCTCTTCCGCGGAGGAGGACAGCGAGGGCGGTGGTGAAGGGCGGCTAG
AGGGCAAGAAGGGCTCGGGTCGTCGGCGGGGGGGCGGGGAGGAGGTGGCG
GGGTGGGGTGATGCGCGAGAGGAACGGGCCGCCTCTGAGCTTCCTTGGAG
CTTCGACAAGAAAGAGGAAGAGGACGACGATGAGGAGGATGAGGCGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGATGCCGGT
TTTCCGCTTGGAGGAGGCGGTAGGGATGATGTCGGCGATGACGGCGGGTC
CGAAACGGGCTGGTCAACTCGCGCCAACGCTGGGAGCGCCGCCACTGCCG
GCGACGACGGCGGCGATAAGGAACGCAGCAGGAAGGCGGTCCTCCACGCC
CGGGCCGATCGCCTGAGCTCCCGCGAGCTCATGAAGGCCCTGGACGGACT
GGGCGCGCGGTACAGGATCCCGGCGCCTCGGGCGGAGCTCCAGCAGGCGT
TCGTGTCCGCGGTGTTGGCGGCGGAGGAGGACGAGCGCAGCCAGGCCGAC
GCTACGGCGGCGGCGTCGGGGACAAGAGGGGAGAAGATAATCCCGGTCAG
CCCGTACGACGCGCCGCTCGAGGAAGGCGACGGGGGGCTCCTCGGTACGC
AGGGGTTCGGCACGTACCACTCCGCTCTCCGGTGGGCGCGGCAGCTGAAC
TTCGACGACGTGCTGGACGAGCTGAGGTACAGGGGGGTGGAGCACAGCCC
CAGGGCCGACTACAGCTACTTGACTCGGCTGCTAGCGGACGAGGTGCTCG
CCGACGAGGAGCTCATGGGAGAGGAAGGGGGACCGGAAGCAGGAGCAGAC
GCGTACACGGCAGAGGTAGAAGCGGCCATGTCCATGAGCGCCCAGGAGAT
GATCCGTGACCTTCGCGCTGGCGGAGAAATTGCCGACGTTACCCTTAGCA
AGGAAGCGCTCGCCGAGAGGCTGGCCGAGATGAAGCTGCGTCTCCGCGGG
GAGCCGCTGGCCCACAGCGGAAGCAGCGCCGCCTACTCTTACCGCGGCAG
CCCACCACCGCCGCAAGGCCGGGCACGCGGCGGCGGCGGCGGCGGTAGCA
CGGAGGCTAGAGGACCGGCGGACCCGCTCGGCCGCCGTGACGGCGATGAA
GACGTGCTACTGGAGCTGGAGGAGGCGGCCAAGTCGGTCGGGGGCGCGGC
ACTCCTGGTCGCCAGAGAAGCGGCGGCCTTCGTCTCCGAAACCGCGGCCG
GCTTCTTCCCCCCTCCCCCCGCCGACGACAACGACGGAGGTCGGAGCGCT
TCGCCGTCGGCAGCGGGGAGAGGGGGGCGAGGAGGGGGGGGCGGCGGCGG
CGGCGGCGACGGCGAGCAAGAGACGGAGCGGTCGCGGCAGGTGCGAGCCG
CGAGGGAGCGGGCGGGCGGAGTGCGGAGGGCCGCGACGGGGTATGCTCAG
AGCTCGGTCAACCGGGCCGGGTTCGCGGTCCTGCAGAGCCTGGCGAACGG
GCTGCTGAGGGGCGCGGAGGCGGCGGCCGACTGGGCGGGGGACGGCGCGC
TCGCCCGCGAATTCGGCCGCGTCGCTGCCCAGAAGCTGGTCTTGGAGGGG
TGGAAGATGGAGCGGGCGAAGAGAAGGCGCGCAACGGAAGACGGCGGCAG
CGGCGGCGGCGGCGGTAGTAGTACCGCTGCTGGGGTGGGTGGGGGCGGTG
CGACCGCATCTAGGCGAGGTACGTCAGGGTACACCGCTGCTCCCGCTGGC
CGCCGCCGCCGCCGGCCGCGACCCGAGAAGGAGACGGAGACGAGGCGCCC
TCGACCAAAGGATGCCAGAAAGAAGAAGGGGAAAGAACGGGGTTCGGCGC
GTTCGAGAAGGACCAAGAAGCCCGCGAGAAAGCCCTTGTGGGAAGAATCG
GACGACGACGACAGAGGCTGTGTGGTGATGTGA
back to top